Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

42213216 .. 42215677

Gene Structure 2462 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1283600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGAACGCTACACTTGTGCTGCCAGAACTGGATGCGAACTCTTTTTGGCATGATGACAGTGGTTTCGGCGGTATCTATGATGTTGAGCATTTTATCAAGTCATTGAGGTATGATGTAAAAATTGTAGAAAAAATACCAGAAATTCGCAAAAATGGGAAGACCAAGAAGATAAAAGCTGTGCAGCTTCGTCCCCCTCGAGATTCTCCTATCAGTTGGTATACTACAGATGCACTTGCGAAAATGAAGGAGCATGGTGCTATTTATCTTACTCCCTTTTCACATCGCTTGGCAGAAGAGAATGACAACCCTGAGTATCAACGGTTGAGATGCAGACTTCACTCACAAGGTCACTTCATGTCCATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGGCTGCTTTGATATTTTCAACCCCAAAGAGCAAGAGATTTTGAAGAAGTATCGAAAAGAAAATTTTGCGCCAAAGAAGCTTGTCTATGAGGAAAGAAGAGCCCTAGGAAAATGCCCATTAACTCCTGAAGAGCTAGCAGAAAACACCCAGGGATTGTTAGGGTCTGCAGTGGACTACATGGTTTGCCTCCTCTCTGATATTTTTATACCTACATATGATGGCCCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCCCTATTATGGCTTCCGGACCACAATTAGACCGGATAGGAAAGCACAAGCGGACCCCGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

240

Amino Acids

27.6

Weight (kDa)

8.24

Isoelectric Point (pI)

37.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	1 - 111	3.7e-27	GDP-fucose protein O-fucosyltransferase
O-FucT	PF10250	114 - 184	3e-13	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	218
AccIII	TCCGGA	1 cut(s)	672
AciI	CCGC	4 cut(s)	69, 655, 707, 714
AcsI	RAATTY	2 cut(s)	141, 460
AcuI	CTGAAG	1 cut(s)	546
AfiI	CCNNNNNNNGG	1 cut(s)	665
AgsI	TTSAA	2 cut(s)	418, 442
AjnI	CCWGG	1 cut(s)	546
AluBI	AGCT	4 cut(s)	176, 184, 478, 532
AluI	AGCT	4 cut(s)	176, 184, 478, 532
Ama87I	CYCGRG	1 cut(s)	195
Aor13HI	TCCGGA	1 cut(s)	672
AoxI	GGCC	1 cut(s)	619
ApeKI	GCWGC	3 cut(s)	19, 181, 402
ApoI	RAATTY	2 cut(s)	141, 460
ArsI	GACNNNNNNTTYG	2 cut(s)	47, 79
AspA2I	CCTAGG	1 cut(s)	502
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	3 cut(s)	620, 675, 709
AsuNHI	GCTAGC	1 cut(s)	532
AvaI	CYCGRG	1 cut(s)	195
AvaII	GGWCC	2 cut(s)	675, 709
AvrII	CCTAGG	1 cut(s)	502
BanII	GRGCYC	1 cut(s)	502
BbsI	GAAGAC	1 cut(s)	164
BbvI	GCAGC	3 cut(s)	6, 193, 389
BccI	CCATC	2 cut(s)	373, 611
BciT130I	CCWGG	1 cut(s)	548
BfaI	CTAG	3 cut(s)	503, 533, 624
BfmI	CTRYAG	2 cut(s)	222, 564
BisI	GCNGC	3 cut(s)	20, 182, 403
BlnI	CCTAGG	1 cut(s)	502
BlsI	GCNGC	3 cut(s)	21, 183, 404
Bme1390I	CCNGG	1 cut(s)	548
Bme18I	GGWCC	2 cut(s)	675, 709
BmeT110I	CYCGRG	1 cut(s)	195
BmgT120I	GGNCC	3 cut(s)	620, 675, 709
BmiI	GGNNCC	1 cut(s)	711
BmrFI	CCNGG	1 cut(s)	548
BmsI	GCATC	3 cut(s)	22, 217, 317
BmtI	GCTAGC	1 cut(s)	536
BpiI	GAAGAC	1 cut(s)	164
BsaJI	CCNNGG	4 cut(s)	502, 546, 547, 646
BsaWI	WCCGGW	2 cut(s)	672, 688
Bsc4I	CCNNNNNNNGG	1 cut(s)	665
Bse1I	ACTGG	1 cut(s)	33
BseAI	TCCGGA	1 cut(s)	672
BseBI	CCWGG	1 cut(s)	548
BseDI	CCNNGG	4 cut(s)	502, 546, 547, 646
BseGI	GGATG	1 cut(s)	37
BseLI	CCNNNNNNNGG	1 cut(s)	665
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	33
BseRI	GAGGAG	1 cut(s)	578
BseXI	GCAGC	3 cut(s)	6, 193, 389
BsgI	GTGCAG	1 cut(s)	200
BshFI	GGCC	1 cut(s)	621
BsiHKCI	CYCGRG	1 cut(s)	195
BsiSI	CCGG	2 cut(s)	673, 689
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	1 cut(s)	665
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	1 cut(s)	621
BsoBI	CYCGRG	1 cut(s)	195
Bsp1286I	GDGCHC	1 cut(s)	502
Bsp13I	TCCGGA	1 cut(s)	672
BspACI	CCGC	4 cut(s)	69, 655, 707, 714
BspANI	GGCC	1 cut(s)	621
BspCNI	CTCAG	1 cut(s)	301
BspEI	TCCGGA	1 cut(s)	672
BspLI	GGNNCC	1 cut(s)	711
BspMAI	CTGCAG	1 cut(s)	568
BspOI	GCTAGC	1 cut(s)	536
BspQI	GCTCTTC	2 cut(s)	490, 522
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	4 cut(s)	502, 546, 547, 646
BssNAI	GTATAC	1 cut(s)	219
BssT1I	CCWWGG	2 cut(s)	502, 646
Bst1107I	GTATAC	1 cut(s)	219
Bst2UI	CCWGG	1 cut(s)	548
Bst4CI	ACNGT	2 cut(s)	59, 321
Bst6I	CTCTTC	3 cut(s)	288, 490, 522
BstC8I	GCNNGC	3 cut(s)	390, 400, 534
BstDEI	CTNAG	1 cut(s)	309
BstF5I	GGATG	1 cut(s)	37
BstHHI	GCGC	1 cut(s)	469
BstMWI	GCNNNNNNNGC	2 cut(s)	475, 713
BstNI	CCWGG	1 cut(s)	548
BstSCI	CCNGG	1 cut(s)	546
BstSFI	CTRYAG	2 cut(s)	222, 564
BstV1I	GCAGC	3 cut(s)	6, 193, 389
BstV2I	GAAGAC	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	219
BsuRI	GGCC	1 cut(s)	621
BtgZI	GCGATG	1 cut(s)	266
BtsCI	GGATG	1 cut(s)	37
BtsI	GCAGTG	1 cut(s)	573
BtsIMutI	CAGTG	2 cut(s)	64, 573
Cac8I	GCNNGC	3 cut(s)	390, 400, 534
CfoI	GCGC	1 cut(s)	469
Cfr13I	GGNCC	3 cut(s)	620, 675, 709
CviAII	CATG	4 cut(s)	50, 251, 355, 577
CviJI	RGCY	8 cut(s)	176, 184, 402, 478, 500, 532, 621, 669
CviKI_1	RGCY	8 cut(s)	176, 184, 402, 478, 500, 532, 621, 669
DdeI	CTNAG	1 cut(s)	309
Eam1104I	CTCTTC	3 cut(s)	288, 490, 522
EarI	CTCTTC	3 cut(s)	288, 490, 522
Eco130I	CCWWGG	2 cut(s)	502, 646
Eco24I	GRGCYC	1 cut(s)	502
Eco47I	GGWCC	2 cut(s)	675, 709
Eco57I	CTGAAG	1 cut(s)	546
Eco88I	CYCGRG	1 cut(s)	195
EcoRII	CCWGG	1 cut(s)	546
EcoT14I	CCWWGG	2 cut(s)	502, 646
EcoT38I	GRGCYC	1 cut(s)	502
ErhI	CCWWGG	2 cut(s)	502, 646
FaeI	CATG	4 cut(s)	53, 254, 358, 580
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	4 cut(s)	49, 250, 354, 576
FauNDI	CATATG	1 cut(s)	613
FblI	GTMKAC	1 cut(s)	218
Fnu4HI	GCNGC	3 cut(s)	20, 182, 403
FokI	GGATG	1 cut(s)	44
FriOI	GRGCYC	1 cut(s)	502
Fsp4HI	GCNGC	3 cut(s)	20, 182, 403
FspBI	CTAG	3 cut(s)	503, 533, 624
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	3 cut(s)	20, 182, 403
HaeIII	GGCC	1 cut(s)	621
HapII	CCGG	2 cut(s)	673, 689
HhaI	GCGC	1 cut(s)	469
Hin1II	CATG	4 cut(s)	53, 254, 358, 580
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HindIII	AAGCTT	1 cut(s)	476
HinfI	GANTC	1 cut(s)	200
HpaII	CCGG	2 cut(s)	673, 689
Hpy166II	GTNNAC	2 cut(s)	219, 571
Hpy188I	TCNGA	1 cut(s)	595
Hpy188III	TCNNGA	3 cut(s)	197, 524, 673
Hpy8I	GTNNAC	2 cut(s)	219, 571
HpyAV	CCTTC	1 cut(s)	238
HpyCH4III	ACNGT	2 cut(s)	59, 321
HpyCH4V	TGCA	4 cut(s)	181, 230, 330, 566
HpyF10VI	GCNNNNNNNGC	2 cut(s)	475, 713
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	4 cut(s)	53, 254, 358, 580
HspAI	GCGC	1 cut(s)	467
Kpn2I	TCCGGA	1 cut(s)	672
LguI	GCTCTTC	2 cut(s)	490, 522
LmnI	GCTCC	1 cut(s)	247
Lsp1109I	GCAGC	3 cut(s)	6, 193, 389
LweI	GCATC	3 cut(s)	22, 217, 317
MaeI	CTAG	3 cut(s)	503, 533, 624
MaeIII	GTNAC	1 cut(s)	347
MboII	GAAGA	7 cut(s)	169, 178, 305, 359, 454, 507, 539
MhlI	GDGCHC	1 cut(s)	502
MluCI	AATT	4 cut(s)	120, 141, 460, 681
MnlI	CCTC	5 cut(s)	99, 204, 481, 596, 599
MroI	TCCGGA	1 cut(s)	672
MseI	TTAA	1 cut(s)	518
MspI	CCGG	2 cut(s)	673, 689
MspR9I	CCNGG	1 cut(s)	548
MvaI	CCWGG	1 cut(s)	548
MwoI	GCNNNNNNNGC	2 cut(s)	475, 713
NdeI	CATATG	1 cut(s)	613
NheI	GCTAGC	1 cut(s)	532
NlaIII	CATG	4 cut(s)	53, 254, 358, 580
NlaIV	GGNNCC	1 cut(s)	711
NmuCI	GTSAC	1 cut(s)	347
PaeR7I	CTCGAG	1 cut(s)	195
PasI	CCCWGGG	1 cut(s)	547
PciSI	GCTCTTC	2 cut(s)	490, 522
PcsI	WCGNNNNNNNCGW	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	3 cut(s)	21, 183, 404
Psp6I	CCWGG	1 cut(s)	546
PspGI	CCWGG	1 cut(s)	546
PspN4I	GGNNCC	1 cut(s)	711
PspPI	GGNCC	3 cut(s)	620, 675, 709
PstI	CTGCAG	1 cut(s)	568
SapI	GCTCTTC	2 cut(s)	490, 522
SaqAI	TTAA	1 cut(s)	518
SatI	GCNGC	3 cut(s)	20, 182, 403
Sau96I	GGNCC	3 cut(s)	620, 675, 709
ScrFI	CCNGG	1 cut(s)	548
SduI	GDGCHC	1 cut(s)	502
SetI	ASST	7 cut(s)	110, 178, 186, 349, 480, 534, 610
SfaNI	GCATC	3 cut(s)	22, 217, 317
SfcI	CTRYAG	2 cut(s)	222, 564
Sfr274I	CTCGAG	1 cut(s)	195
SinI	GGWCC	2 cut(s)	675, 709
SlaI	CTCGAG	1 cut(s)	195
SmlI	CTYRAG	1 cut(s)	195
SmoI	CTYRAG	1 cut(s)	195
Sse9I	AATT	4 cut(s)	120, 141, 460, 681
SsiI	CCGC	4 cut(s)	69, 655, 707, 714
SspMI	CTAG	3 cut(s)	503, 533, 624
StyD4I	CCNGG	1 cut(s)	546
StyI	CCWWGG	2 cut(s)	502, 646
TaaI	ACNGT	2 cut(s)	59, 321
TaqI	TCGA	2 cut(s)	196, 451
TasI	AATT	4 cut(s)	120, 141, 460, 681
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	518
Tru9I	TTAA	1 cut(s)	518
TscAI	CASTG	2 cut(s)	64, 573
TseFI	GTSAC	1 cut(s)	347
TseI	GCWGC	3 cut(s)	19, 181, 402
Tsp45I	GTSAC	1 cut(s)	347
TspDTI	ATGAA	3 cut(s)	17, 257, 343
TspRI	CASTG	2 cut(s)	64, 573
VpaK11BI	GGWCC	2 cut(s)	675, 709
XapI	RAATTY	2 cut(s)	141, 460
XhoI	CTCGAG	1 cut(s)	195
XmaJI	CCTAGG	1 cut(s)	502
XmiI	GTMKAC	1 cut(s)	218
XspI	CTAG	3 cut(s)	503, 533, 624

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.