Rorug04G0127900

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
Physical Location & Seq
Forward (+)
20356135 .. 20357979
1845 bp
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UTR
Exon/CDS
Intron
Rorug04G0127900.1

Sequence Viewer

Length: 363 bp
ATGTCTACTCATAATGGTACTAACTCTAGTGGAAGCAGCTTTGGTAGCGTTCATAGCAATAAATTGCCATTGGGACAAGGTGTTGCTTCGTTAACAATATTGAATATTGTTTCAGCTTTATCTCTGCTACTAGTAATAATTCTACGGGGCATGATATATACTCATAAAGCTGACTATGGTGTTGAAGATGAGTATGATACTAGGGGTAGAACATGGGAACCACTGCTAAATCAACAGACAAGCCAAGCATCTGGATCAACCAAGGGTGATGGTAGAGTGACTCACTCTGACATTTGGAGCTCACGAATAGGAGATAAGATTGCAAGAATTATATGGAACAATGGCTCATCTTCAAAACTTTGA

Protein Analysis

120

Amino Acids

12.93

Weight (kDa)

9.16

Isoelectric Point (pI)

32.54

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 262
AfaI GTAC 1 cut(s) 19
AgsI TTSAA 3 cut(s) 103, 185, 354
AhlI ACTAGT 1 cut(s) 130
AluBI AGCT 4 cut(s) 39, 116, 170, 300
AluI AGCT 4 cut(s) 39, 116, 170, 300
Alw21I GWGCWC 1 cut(s) 302
AlwI GGATC 1 cut(s) 262
ApeKI GCWGC 1 cut(s) 36
AsuHPI GGTGA 1 cut(s) 278
BanII GRGCYC 1 cut(s) 302
Bbv12I GWGCWC 1 cut(s) 302
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 263
BcuI ACTAGT 1 cut(s) 130
BfaI CTAG 3 cut(s) 27, 131, 201
BisI GCNGC 1 cut(s) 37
BlsI GCNGC 1 cut(s) 38
BmiI GGNNCC 1 cut(s) 219
BmsI GCATC 1 cut(s) 257
BsaJI CCNNGG 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 261
BseXI GCAGC 1 cut(s) 48
BsiHKAI GWGCWC 1 cut(s) 302
BslFI GGGAC 1 cut(s) 87
BsmFI GGGAC 1 cut(s) 87
Bsp1286I GDGCHC 1 cut(s) 302
Bsp143I GATC 1 cut(s) 254
BspLI GGNNCC 1 cut(s) 219
BspPI GGATC 1 cut(s) 262
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 1 cut(s) 254
BssT1I CCWWGG 1 cut(s) 261
BstKTI GATC 1 cut(s) 257
BstMBI GATC 1 cut(s) 254
BstMWI GCNNNNNNNGC 2 cut(s) 45, 54
BstV1I GCAGC 1 cut(s) 48
BstXI CCANNNNNNTGG 1 cut(s) 251
BtsI GCAGTG 1 cut(s) 221
BtsIMutI CAGTG 1 cut(s) 221
Csp6I GTAC 1 cut(s) 18
CviAII CATG 2 cut(s) 151, 213
CviJI RGCY 6 cut(s) 39, 116, 170, 243, 300, 345
CviKI_1 RGCY 6 cut(s) 39, 116, 170, 243, 300, 345
CviQI GTAC 1 cut(s) 18
DpnI GATC 1 cut(s) 256
DpnII GATC 1 cut(s) 254
Ecl136II GAGCTC 1 cut(s) 300
Eco130I CCWWGG 1 cut(s) 261
Eco24I GRGCYC 1 cut(s) 302
Eco53kI GAGCTC 1 cut(s) 300
EcoICRI GAGCTC 1 cut(s) 300
EcoT14I CCWWGG 1 cut(s) 261
EcoT38I GRGCYC 1 cut(s) 302
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 2 cut(s) 154, 216
FaqI GGGAC 1 cut(s) 87
FatI CATG 2 cut(s) 150, 212
FblI GTMKAC 1 cut(s) 5
Fnu4HI GCNGC 1 cut(s) 37
FriOI GRGCYC 1 cut(s) 302
Fsp4HI GCNGC 1 cut(s) 37
FspBI CTAG 3 cut(s) 27, 131, 201
GluI GCNGC 1 cut(s) 37
Hin1II CATG 2 cut(s) 154, 216
HincII GTYRAC 1 cut(s) 93
HindII GTYRAC 1 cut(s) 93
HinfI GANTC 1 cut(s) 280
HpaI GTTAAC 1 cut(s) 93
HphI GGTGA 1 cut(s) 278
Hpy166II GTNNAC 2 cut(s) 6, 93
Hpy188I TCNGA 1 cut(s) 289
Hpy188III TCNNGA 2 cut(s) 252, 303
Hpy8I GTNNAC 2 cut(s) 6, 93
HpyCH4V TGCA 1 cut(s) 323
HpyF10VI GCNNNNNNNGC 2 cut(s) 45, 54
Hsp92II CATG 2 cut(s) 154, 216
KspAI GTTAAC 1 cut(s) 93
Kzo9I GATC 1 cut(s) 254
LmnI GCTCC 1 cut(s) 297
LpnPI CCDG 1 cut(s) 237
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 1 cut(s) 257
MaeI CTAG 3 cut(s) 27, 131, 201
MaeIII GTNAC 1 cut(s) 277
MalI GATC 1 cut(s) 256
MboI GATC 1 cut(s) 254
MboII GAAGA 2 cut(s) 197, 342
MhlI GDGCHC 1 cut(s) 302
MluCI AATT 3 cut(s) 62, 138, 327
MlyI GAGTC 1 cut(s) 274
MseI TTAA 1 cut(s) 92
MwoI GCNNNNNNNGC 2 cut(s) 45, 54
NdeII GATC 1 cut(s) 254
NlaIII CATG 2 cut(s) 154, 216
NlaIV GGNNCC 1 cut(s) 219
NmuCI GTSAC 1 cut(s) 277
PkrI GCNGC 1 cut(s) 38
PleI GAGTC 1 cut(s) 274
PpsI GAGTC 1 cut(s) 274
Psp124BI GAGCTC 1 cut(s) 302
PspN4I GGNNCC 1 cut(s) 219
RsaI GTAC 1 cut(s) 19
RsaNI GTAC 1 cut(s) 18
SacI GAGCTC 1 cut(s) 302
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 37
Sau3AI GATC 1 cut(s) 254
SchI GAGTC 1 cut(s) 274
SduI GDGCHC 1 cut(s) 302
SetI ASST 5 cut(s) 41, 82, 118, 172, 302
SfaNI GCATC 1 cut(s) 257
SpeI ACTAGT 1 cut(s) 130
Sse9I AATT 3 cut(s) 62, 138, 327
SspI AATATT 2 cut(s) 99, 106
SspMI CTAG 3 cut(s) 27, 131, 201
SstI GAGCTC 1 cut(s) 302
StyI CCWWGG 1 cut(s) 261
TasI AATT 3 cut(s) 62, 138, 327
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 1 cut(s) 277
TseI GCWGC 1 cut(s) 36
Tsp45I GTSAC 1 cut(s) 277
TspDTI ATGAA 1 cut(s) 41
TspRI CASTG 1 cut(s) 228
XmiI GTMKAC 1 cut(s) 5
XspI CTAG 3 cut(s) 27, 131, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.