Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

25374301 .. 25375882

Gene Structure 1582 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013051

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

ATGCAAGAATTGAAGAAAAAATTGAATCATGGAACCGACCCGACTCAACTTCTGAAGCAATGCGAAGAGCGGGGCTTTATAATCGGCAGCATGCGAAGCAAGTGGGGAGGAGGAGCAAGTGTGAAGGCCAAGATTGGGAAGCTGTTGCTCGCCGTTGTCGTCCTCTTGATCTGCACCGTTTCCTTGCTCTTTACGTCCGCCTCCACCAGTGGCGGTGCTGCTGGATCTGCCTACCGCTCTGAGATCAATTTGGAAAAACTTTGGAGAAGTGCTGACTCTGGAGGTTGGAGGCCGTCATCAGCTCCACGATCGGATTGGCCTCCTCCACCAAGCGAGACTATCGGCTACCTACGTGTGCGCTGTAATGGTGGTCTCAATCAACAACGTACTGGATCTGTAATGCAGTTCTGGCAGCAAGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

141

Amino Acids

15.25

Weight (kDa)

9.81

Isoelectric Point (pI)

42.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	80
AccBSI	CCGCTC	2 cut(s)	70, 237
AciI	CCGC	4 cut(s)	70, 198, 213, 235
AclWI	GGATC	2 cut(s)	232, 400
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	388
AfiI	CCNNNNNNNGG	1 cut(s)	135
AflIII	ACRYGT	1 cut(s)	352
AgsI	TTSAA	2 cut(s)	13, 25
AluBI	AGCT	2 cut(s)	142, 302
AluI	AGCT	2 cut(s)	142, 302
Alw26I	GTCTC	2 cut(s)	329, 377
AlwI	GGATC	2 cut(s)	232, 400
AoxI	GGCC	3 cut(s)	126, 290, 317
ApeKI	GCWGC	3 cut(s)	87, 218, 412
AspLEI	GCGC	1 cut(s)	360
BbvI	GCAGC	2 cut(s)	99, 205
BceAI	ACGGC	2 cut(s)	137, 277
BcoDI	GTCTC	2 cut(s)	329, 377
BisI	GCNGC	3 cut(s)	88, 219, 413
BlsI	GCNGC	3 cut(s)	89, 220, 414
BmiI	GGNNCC	1 cut(s)	34
BpmI	CTGGAG	1 cut(s)	300
BsaAI	YACGTR	1 cut(s)	353
BsaI	GGTCTC	1 cut(s)	377
BsaXI	ACNNNNNCTCC	2 cut(s)	105, 135
Bsc4I	CCNNNNNNNGG	1 cut(s)	135
Bse1I	ACTGG	2 cut(s)	207, 394
Bse3DI	GCAATG	1 cut(s)	65
BseLI	CCNNNNNNNGG	1 cut(s)	135
BseMI	GCAATG	1 cut(s)	65
BseMII	CTCAG	1 cut(s)	231
BseNI	ACTGG	2 cut(s)	207, 394
BseRI	GAGGAG	3 cut(s)	123, 126, 312
BseXI	GCAGC	2 cut(s)	99, 205
BsgI	GTGCAG	1 cut(s)	157
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	3 cut(s)	128, 292, 319
BsiEI	CGRYCG	1 cut(s)	311
BslI	CCNNNNNNNGG	1 cut(s)	135
BsmAI	GTCTC	2 cut(s)	329, 377
BsnI	GGCC	3 cut(s)	128, 292, 319
Bso31I	GGTCTC	1 cut(s)	377
Bsp143I	GATC	5 cut(s)	168, 224, 243, 308, 392
BspACI	CCGC	4 cut(s)	70, 198, 213, 235
BspANI	GGCC	3 cut(s)	128, 292, 319
BspCNI	CTCAG	1 cut(s)	232
BspLI	GGNNCC	1 cut(s)	34
BspPI	GGATC	2 cut(s)	232, 400
BspQI	GCTCTTC	1 cut(s)	60
BspTNI	GGTCTC	1 cut(s)	377
BsrBI	CCGCTC	2 cut(s)	70, 237
BsrDI	GCAATG	1 cut(s)	65
BsrI	ACTGG	2 cut(s)	207, 394
BssMI	GATC	5 cut(s)	168, 224, 243, 308, 392
Bst4CI	ACNGT	1 cut(s)	178
Bst6I	CTCTTC	1 cut(s)	60
BstBAI	YACGTR	1 cut(s)	353
BstC8I	GCNNGC	2 cut(s)	92, 150
BstDEI	CTNAG	1 cut(s)	240
BstHHI	GCGC	1 cut(s)	360
BstKTI	GATC	5 cut(s)	171, 227, 246, 311, 395
BstMAI	GTCTC	2 cut(s)	329, 377
BstMBI	GATC	5 cut(s)	168, 224, 243, 308, 392
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	3 cut(s)	96, 227, 409
BstNSI	RCATGY	1 cut(s)	94
BstV1I	GCAGC	2 cut(s)	99, 205
BstX2I	RGATCY	2 cut(s)	224, 392
BstYI	RGATCY	2 cut(s)	224, 392
BsuRI	GGCC	3 cut(s)	128, 292, 319
BtsIMutI	CAGTG	1 cut(s)	214
Cac8I	GCNNGC	2 cut(s)	92, 150
CfoI	GCGC	1 cut(s)	360
Csp6I	GTAC	1 cut(s)	387
CviAII	CATG	2 cut(s)	29, 91
CviJI	RGCY	7 cut(s)	75, 128, 142, 292, 302, 319, 345
CviKI_1	RGCY	7 cut(s)	75, 128, 142, 292, 302, 319, 345
CviQI	GTAC	1 cut(s)	387
DdeI	CTNAG	1 cut(s)	240
DpnI	GATC	5 cut(s)	170, 226, 245, 310, 394
DpnII	GATC	5 cut(s)	168, 224, 243, 308, 392
Eam1104I	CTCTTC	1 cut(s)	60
EarI	CTCTTC	1 cut(s)	60
EciI	GGCGGA	1 cut(s)	187
Eco31I	GGTCTC	1 cut(s)	377
Eco57I	CTGAAG	1 cut(s)	74
FaeI	CATG	2 cut(s)	32, 94
FaiI	YATR	3 cut(s)	30, 80, 92
FatI	CATG	2 cut(s)	28, 90
FauI	CCCGC	1 cut(s)	63
Fnu4HI	GCNGC	3 cut(s)	88, 219, 413
Fsp4HI	GCNGC	3 cut(s)	88, 219, 413
GlaI	GCGC	1 cut(s)	359
GluI	GCNGC	3 cut(s)	88, 219, 413
GsuI	CTGGAG	1 cut(s)	300
HaeIII	GGCC	3 cut(s)	128, 292, 319
HhaI	GCGC	1 cut(s)	360
Hin1II	CATG	2 cut(s)	32, 94
Hin6I	GCGC	1 cut(s)	358
HinP1I	GCGC	1 cut(s)	358
HinfI	GANTC	3 cut(s)	25, 43, 275
Hpy188I	TCNGA	3 cut(s)	54, 241, 313
Hpy188III	TCNNGA	2 cut(s)	166, 279
HpyAV	CCTTC	1 cut(s)	118
HpyCH4III	ACNGT	1 cut(s)	178
HpyCH4IV	ACGT	3 cut(s)	194, 352, 385
HpyCH4V	TGCA	3 cut(s)	4, 174, 403
HpyF10VI	GCNNNNNNNGC	3 cut(s)	96, 227, 409
HpyF3I	CTNAG	1 cut(s)	240
HpySE526I	ACGT	3 cut(s)	194, 352, 385
Hsp92II	CATG	2 cut(s)	32, 94
HspAI	GCGC	1 cut(s)	358
Kzo9I	GATC	5 cut(s)	168, 224, 243, 308, 392
LguI	GCTCTTC	1 cut(s)	60
LmnI	GCTCC	2 cut(s)	113, 307
LpnPI	CCDG	5 cut(s)	207, 220, 264, 375, 394
Lsp1109I	GCAGC	2 cut(s)	99, 205
MaeII	ACGT	3 cut(s)	194, 352, 385
MalI	GATC	5 cut(s)	170, 226, 245, 310, 394
MbiI	CCGCTC	2 cut(s)	70, 237
MboI	GATC	5 cut(s)	168, 224, 243, 308, 392
MboII	GAAGA	2 cut(s)	25, 77
MflI	RGATCY	2 cut(s)	224, 392
MluCI	AATT	3 cut(s)	8, 20, 247
MlyI	GAGTC	2 cut(s)	37, 269
MmeI	TCCRAC	1 cut(s)	266
MnlI	CCTC	8 cut(s)	101, 104, 173, 211, 275, 282, 330, 333
MwoI	GCNNNNNNNGC	3 cut(s)	96, 227, 409
NdeII	GATC	5 cut(s)	168, 224, 243, 308, 392
NlaIII	CATG	2 cut(s)	32, 94
NlaIV	GGNNCC	1 cut(s)	34
NspI	RCATGY	1 cut(s)	94
PaeI	GCATGC	1 cut(s)	94
PciSI	GCTCTTC	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	156
PfeI	GAWTC	1 cut(s)	25
PkrI	GCNGC	3 cut(s)	89, 220, 414
Ple19I	CGATCG	1 cut(s)	311
PleI	GAGTC	2 cut(s)	37, 269
PpsI	GAGTC	2 cut(s)	37, 269
Ppu21I	YACGTR	1 cut(s)	353
PsiI	TTATAA	1 cut(s)	80
PspN4I	GGNNCC	1 cut(s)	34
PsuI	RGATCY	2 cut(s)	224, 392
PvuI	CGATCG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	388
RsaNI	GTAC	1 cut(s)	387
SapI	GCTCTTC	1 cut(s)	60
SatI	GCNGC	3 cut(s)	88, 219, 413
Sau3AI	GATC	5 cut(s)	168, 224, 243, 308, 392
SchI	GAGTC	2 cut(s)	37, 269
SetI	ASST	7 cut(s)	144, 197, 286, 304, 351, 355, 388
SphI	GCATGC	1 cut(s)	94
Sse9I	AATT	3 cut(s)	8, 20, 247
SsiI	CCGC	4 cut(s)	70, 198, 213, 235
TaaI	ACNGT	1 cut(s)	178
TaiI	ACGT	3 cut(s)	197, 355, 388
TasI	AATT	3 cut(s)	8, 20, 247
TfiI	GAWTC	1 cut(s)	25
TscAI	CASTG	1 cut(s)	214
TseI	GCWGC	3 cut(s)	87, 218, 412
TspRI	CASTG	1 cut(s)	214
XceI	RCATGY	1 cut(s)	94
XcmI	CCANNNNNNNNNTGG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.