Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

36503038 .. 36504399

Gene Structure 1362 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G015920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGCCCGAAATTCGCAAAAATGGGAAGACCAAGAAGATAAAAGCTGTACAGGTCGGTCTTATTTTACACGCAATGGAATTGAACAATTCTACCAGGATATACCTAGCAGCTGGTAAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACAGTTCTGTGGAACACTCAGATGAGCTACCAGTGAACACACAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTCCCTGATATTTTTATGCCTACATATGATGGACCTAACAACATTGCCAACAATCTCCTTGGACACCGCCTCTATGTTAAGGTCAAAACCTTAACTGAGAGAGAAAGGAGAAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

125

Amino Acids

14.17

Weight (kDa)

9.63

Isoelectric Point (pI)

36.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	5 - 112	4.8e-18	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	328
AcsI	RAATTY	1 cut(s)	9
AfaI	GTAC	1 cut(s)	48
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	92
AluBI	AGCT	3 cut(s)	44, 110, 205
AluI	AGCT	3 cut(s)	44, 110, 205
Alw26I	GTCTC	1 cut(s)	263
ApeKI	GCWGC	1 cut(s)	107
ApoI	RAATTY	1 cut(s)	9
AseI	ATTAAT	1 cut(s)	227
Asp700I	GAANNNNTTC	1 cut(s)	146
AspS9I	GGNCC	1 cut(s)	293
AsuHPI	GGTGA	1 cut(s)	158
AvaII	GGWCC	1 cut(s)	293
BbsI	GAAGAC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	119
BccI	CCATC	1 cut(s)	284
BciT130I	CCWGG	1 cut(s)	94
BcoDI	GTCTC	1 cut(s)	263
BfaI	CTAG	1 cut(s)	104
BfmI	CTRYAG	1 cut(s)	237
BisI	GCNGC	1 cut(s)	108
BlsI	GCNGC	1 cut(s)	109
Bme1390I	CCNGG	1 cut(s)	94
Bme18I	GGWCC	1 cut(s)	293
BmgT120I	GGNCC	1 cut(s)	293
BmrFI	CCNGG	1 cut(s)	94
BpiI	GAAGAC	1 cut(s)	32
BpuEI	CTTGAG	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	209
Bse3DI	GCAATG	2 cut(s)	78, 303
BseBI	CCWGG	1 cut(s)	94
BseDI	CCNNGG	1 cut(s)	319
BseMI	GCAATG	2 cut(s)	78, 303
BseMII	CTCAG	2 cut(s)	210, 348
BseNI	ACTGG	1 cut(s)	209
BseRI	GAGGAG	1 cut(s)	251
BseXI	GCAGC	1 cut(s)	119
BsmAI	GTCTC	1 cut(s)	263
Bsp1407I	TGTACA	1 cut(s)	46
BspACI	CCGC	1 cut(s)	328
BspCNI	CTCAG	2 cut(s)	209, 349
BspHI	TCATGA	1 cut(s)	138
BspMAI	CTGCAG	1 cut(s)	241
BsrDI	GCAATG	2 cut(s)	78, 303
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	209
BssECI	CCNNGG	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	319
Bst2UI	CCWGG	1 cut(s)	94
Bst4CI	ACNGT	1 cut(s)	182
BstAUI	TGTACA	1 cut(s)	46
BstDEI	CTNAG	2 cut(s)	196, 357
BstMAI	GTCTC	1 cut(s)	263
BstNI	CCWGG	1 cut(s)	94
BstSCI	CCNGG	1 cut(s)	92
BstSFI	CTRYAG	1 cut(s)	237
BstV1I	GCAGC	1 cut(s)	119
BstV2I	GAAGAC	1 cut(s)	32
BtsI	GCAGTG	1 cut(s)	246
BtsIMutI	CAGTG	2 cut(s)	216, 246
CciI	TCATGA	1 cut(s)	138
Cfr13I	GGNCC	1 cut(s)	293
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	139, 250
CviJI	RGCY	3 cut(s)	44, 110, 205
CviKI_1	RGCY	3 cut(s)	44, 110, 205
CviQI	GTAC	1 cut(s)	47
DdeI	CTNAG	2 cut(s)	196, 357
Eco130I	CCWWGG	1 cut(s)	319
Eco47I	GGWCC	1 cut(s)	293
EcoRII	CCWGG	1 cut(s)	92
EcoT14I	CCWWGG	1 cut(s)	319
ErhI	CCWWGG	1 cut(s)	319
FaeI	CATG	2 cut(s)	142, 253
FaiI	YATR	7 cut(s)	100, 140, 251, 278, 286, 288, 336
FatI	CATG	2 cut(s)	138, 249
FauNDI	CATATG	1 cut(s)	286
Fnu4HI	GCNGC	1 cut(s)	108
Fsp4HI	GCNGC	1 cut(s)	108
FspBI	CTAG	1 cut(s)	104
GluI	GCNGC	1 cut(s)	108
Hin1II	CATG	2 cut(s)	142, 253
HinfI	GANTC	1 cut(s)	135
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	2 cut(s)	116, 214
Hpy188I	TCNGA	1 cut(s)	199
Hpy188III	TCNNGA	1 cut(s)	139
Hpy8I	GTNNAC	2 cut(s)	116, 214
HpyCH4III	ACNGT	1 cut(s)	182
HpyCH4V	TGCA	1 cut(s)	239
HpyF3I	CTNAG	2 cut(s)	196, 357
Hsp92II	CATG	2 cut(s)	142, 253
LpnPI	CCDG	7 cut(s)	35, 79, 96, 106, 206, 222, 279
Lsp1109I	GCAGC	1 cut(s)	119
MaeI	CTAG	1 cut(s)	104
MboII	GAAGA	2 cut(s)	37, 46
MluCI	AATT	3 cut(s)	9, 77, 85
MnlI	CCTC	3 cut(s)	174, 272, 341
MroXI	GAANNNNTTC	1 cut(s)	146
MseI	TTAA	3 cut(s)	227, 339, 353
MslI	CAYNNNNRTG	1 cut(s)	198
MspA1I	CMGCKG	1 cut(s)	110
MspR9I	CCNGG	1 cut(s)	94
MvaI	CCWGG	1 cut(s)	94
NdeI	CATATG	1 cut(s)	286
NlaIII	CATG	2 cut(s)	142, 253
PagI	TCATGA	1 cut(s)	138
PdmI	GAANNNNTTC	1 cut(s)	146
PfeI	GAWTC	1 cut(s)	135
PkrI	GCNGC	1 cut(s)	109
PshBI	ATTAAT	1 cut(s)	227
Psp6I	CCWGG	1 cut(s)	92
PspGI	CCWGG	1 cut(s)	92
PspPI	GGNCC	1 cut(s)	293
PstI	CTGCAG	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	110
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
RseI	CAYNNNNRTG	1 cut(s)	198
SaqAI	TTAA	3 cut(s)	227, 339, 353
SatI	GCNGC	1 cut(s)	108
Sau96I	GGNCC	1 cut(s)	293
ScrFI	CCNGG	1 cut(s)	94
SetI	ASST	9 cut(s)	46, 54, 105, 112, 171, 207, 298, 345, 353
SfcI	CTRYAG	1 cut(s)	237
SinI	GGWCC	1 cut(s)	293
SmiMI	CAYNNNNRTG	1 cut(s)	198
SmlI	CTYRAG	1 cut(s)	170
SmoI	CTYRAG	1 cut(s)	170
Sse9I	AATT	3 cut(s)	9, 77, 85
SsiI	CCGC	1 cut(s)	328
SspMI	CTAG	1 cut(s)	104
StyD4I	CCNGG	1 cut(s)	92
StyI	CCWWGG	1 cut(s)	319
TaaI	ACNGT	1 cut(s)	182
TaqII	GACCGA	1 cut(s)	44
TasI	AATT	3 cut(s)	9, 77, 85
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	1 cut(s)	135
Tru1I	TTAA	3 cut(s)	227, 339, 353
Tru9I	TTAA	3 cut(s)	227, 339, 353
TscAI	CASTG	2 cut(s)	216, 246
TseI	GCWGC	1 cut(s)	107
TspDTI	ATGAA	2 cut(s)	127, 155
TspGWI	ACGGA	1 cut(s)	140
TspRI	CASTG	2 cut(s)	216, 246
VpaK11BI	GGWCC	1 cut(s)	293
VspI	ATTAAT	1 cut(s)	227
XapI	RAATTY	1 cut(s)	9
XmnI	GAANNNNTTC	1 cut(s)	146
XspI	CTAG	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.