Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0029306.1

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

4134 .. 5648

Gene Structure 1515 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0029306.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgcgaagagcggggctttataatcggcagcatgcgaagcaagtgggaggaggagcgagtgtgaaggccaagattgggaagctattgctcgccgttgtcgtcctcttgatctgcaccgtgtccttgctgtttacgtccgcctccactagtggcggtgctgctggatctggctatcgctctgagatcaatttggaaaaactttggagaagtgctgactctggaggttggaggccgtcatcagctccacgatcggattggcctcctccaccaagcgagactaatggctacctacgtgtgcgctgcaatggtggtctcaatcaacaacgtactgcgatctgcaatgcagttctggcagcaagaataatgaacgctacccttgtgctgccggaattggatgcaaactcattttggcatgatgacaggtatttttcaattgttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

147

Amino Acids

15.86

Weight (kDa)

9.94

Isoelectric Point (pI)

43.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
AccBSI	CCGCTC	1 cut(s)	11
AciI	CCGC	3 cut(s)	11, 138, 153
AclWI	GGATC	1 cut(s)	172
AfaI	GTAC	1 cut(s)	328
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	292
AgsI	TTSAA	1 cut(s)	432
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	2 cut(s)	82, 242
AluI	AGCT	2 cut(s)	82, 242
Alw26I	GTCTC	2 cut(s)	269, 317
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	66, 230, 257
ApeKI	GCWGC	5 cut(s)	28, 158, 300, 353, 382
AspLEI	GCGC	1 cut(s)	300
BbvI	GCAGC	5 cut(s)	40, 145, 287, 365, 369
BceAI	ACGGC	2 cut(s)	77, 217
BcoDI	GTCTC	2 cut(s)	269, 317
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	1 cut(s)	147
BisI	GCNGC	5 cut(s)	29, 159, 301, 354, 383
BlsI	GCNGC	5 cut(s)	30, 160, 302, 355, 384
BmsI	GCATC	1 cut(s)	385
BpmI	CTGGAG	1 cut(s)	240
BsaAI	YACGTR	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse3DI	GCAATG	2 cut(s)	310, 346
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	2 cut(s)	310, 346
BseMII	CTCAG	1 cut(s)	171
BseRI	GAGGAG	3 cut(s)	63, 66, 252
BseXI	GCAGC	5 cut(s)	40, 145, 287, 365, 369
BsgI	GTGCAG	1 cut(s)	97
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	68, 232, 259
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	1 cut(s)	386
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	269, 317
BsnI	GGCC	3 cut(s)	68, 232, 259
Bso31I	GGTCTC	1 cut(s)	317
Bsp143I	GATC	5 cut(s)	108, 164, 183, 248, 333
BspACI	CCGC	3 cut(s)	11, 138, 153
BspANI	GGCC	3 cut(s)	68, 232, 259
BspCNI	CTCAG	1 cut(s)	172
BspPI	GGATC	1 cut(s)	172
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	2 cut(s)	310, 346
BssMI	GATC	5 cut(s)	108, 164, 183, 248, 333
Bst4CI	ACNGT	1 cut(s)	118
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	2 cut(s)	33, 90
BstDEI	CTNAG	1 cut(s)	180
BstF5I	GGATG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	5 cut(s)	111, 167, 186, 251, 336
BstMAI	GTCTC	2 cut(s)	269, 317
BstMBI	GATC	5 cut(s)	108, 164, 183, 248, 333
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 350
BstNSI	RCATGY	1 cut(s)	35
BstV1I	GCAGC	5 cut(s)	40, 145, 287, 365, 369
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BsuRI	GGCC	3 cut(s)	68, 232, 259
BtsCI	GGATG	1 cut(s)	400
Cac8I	GCNNGC	2 cut(s)	33, 90
CfoI	GCGC	1 cut(s)	300
Csp6I	GTAC	1 cut(s)	327
CviAII	CATG	2 cut(s)	32, 413
CviJI	RGCY	8 cut(s)	16, 68, 82, 171, 232, 242, 259, 285
CviKI_1	RGCY	8 cut(s)	16, 68, 82, 171, 232, 242, 259, 285
CviQI	GTAC	1 cut(s)	327
DdeI	CTNAG	1 cut(s)	180
DpnI	GATC	5 cut(s)	110, 166, 185, 250, 335
DpnII	GATC	5 cut(s)	108, 164, 183, 248, 333
EciI	GGCGGA	1 cut(s)	127
Eco31I	GGTCTC	1 cut(s)	317
FaeI	CATG	2 cut(s)	35, 416
FaiI	YATR	3 cut(s)	21, 33, 414
FatI	CATG	2 cut(s)	31, 412
FauI	CCCGC	1 cut(s)	4
Fnu4HI	GCNGC	5 cut(s)	29, 159, 301, 354, 383
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	5 cut(s)	29, 159, 301, 354, 383
FspBI	CTAG	1 cut(s)	147
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	5 cut(s)	29, 159, 301, 354, 383
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	68, 232, 259
HapII	CCGG	1 cut(s)	386
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	2 cut(s)	35, 416
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	1 cut(s)	215
HpaII	CCGG	1 cut(s)	386
Hpy166II	GTNNAC	1 cut(s)	132
Hpy188I	TCNGA	2 cut(s)	181, 253
Hpy188III	TCNNGA	2 cut(s)	106, 219
Hpy8I	GTNNAC	1 cut(s)	132
HpyAV	CCTTC	1 cut(s)	58
HpyCH4III	ACNGT	1 cut(s)	118
HpyCH4IV	ACGT	3 cut(s)	134, 292, 325
HpyCH4V	TGCA	5 cut(s)	114, 303, 339, 344, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 350
HpyF3I	CTNAG	1 cut(s)	180
HpySE526I	ACGT	3 cut(s)	134, 292, 325
Hsp92II	CATG	2 cut(s)	35, 416
HspAI	GCGC	1 cut(s)	298
Kzo9I	GATC	5 cut(s)	108, 164, 183, 248, 333
LmnI	GCTCC	2 cut(s)	53, 247
LpnPI	CCDG	6 cut(s)	147, 153, 204, 335, 399, 406
Lsp1109I	GCAGC	5 cut(s)	40, 145, 287, 365, 369
LweI	GCATC	1 cut(s)	385
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	3 cut(s)	134, 292, 325
MalI	GATC	5 cut(s)	110, 166, 185, 250, 335
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	5 cut(s)	108, 164, 183, 248, 333
MboII	GAAGA	1 cut(s)	18
MfeI	CAATTG	1 cut(s)	432
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	3 cut(s)	187, 389, 432
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	1 cut(s)	206
MnlI	CCTC	8 cut(s)	41, 44, 113, 151, 215, 222, 270, 273
MspI	CCGG	1 cut(s)	386
MunI	CAATTG	1 cut(s)	432
MwoI	GCNNNNNNNGC	2 cut(s)	37, 350
NdeII	GATC	5 cut(s)	108, 164, 183, 248, 333
NlaIII	CATG	2 cut(s)	35, 416
NspI	RCATGY	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PkrI	GCNGC	5 cut(s)	30, 160, 302, 355, 384
Ple19I	CGATCG	1 cut(s)	251
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	21
PsuI	RGATCY	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	328
RsaNI	GTAC	1 cut(s)	327
SatI	GCNGC	5 cut(s)	29, 159, 301, 354, 383
Sau3AI	GATC	5 cut(s)	108, 164, 183, 248, 333
SchI	GAGTC	1 cut(s)	209
SetI	ASST	8 cut(s)	84, 137, 226, 244, 291, 295, 328, 425
SfaNI	GCATC	1 cut(s)	385
SpeI	ACTAGT	1 cut(s)	146
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	3 cut(s)	187, 389, 432
SsiI	CCGC	3 cut(s)	11, 138, 153
SspMI	CTAG	1 cut(s)	147
TaaI	ACNGT	1 cut(s)	118
TaiI	ACGT	3 cut(s)	137, 295, 328
TasI	AATT	3 cut(s)	187, 389, 432
TseI	GCWGC	5 cut(s)	28, 158, 300, 353, 382
TspDTI	ATGAA	1 cut(s)	380
XceI	RCATGY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XspI	CTAG	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.