Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Reverse (-)

43347755 .. 43349154

Gene Structure 1400 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG244800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 960 bp

ATGAAGGAGCATGGGGCTATCTATCTAACGCCCTTTTCACATCGTTTGGCGGAAGAAATTGACAACGCCGAGTACCAACGGCTGAGGTGCAGGGTTAACTATCATGCTCTGATATTTAAGTCAAATATTATGAAGTTAAGTCAATCAATAGTTGATAAGCTTCGTACACAAGGTCACTTCATGTCTATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGGGTGCTTTGATATCTTTAACCCAAAAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTACAAGGAAAGAAGAGCAATCGGAAAATGCCCATTAACTCCAGAAGAGGTCGGTCTTATTTTACACGCAATGGAATTTAACAATTCTACCAGGATATACCTAGCTGCTGGTGAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACAATTCTGTGGAGCACTCAGATGAGCTACCAGAGAACACCCAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTCTCTGATATTTTTATGCCTACATATGATGGACCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTCCAATCTTCATTGATCGCGAGAAAGGACGAAAATCAGGTTTTGAAGAAGCTGTTAGGCAAGTGATGCTAAAAACAAACCTTGGCGGCCATCACAAGCGGATCTCACCTGAGTCTTTCTATACAAATTCTTGGCCAGAATGCTTCTGCCAAACATCTCCAAAGAATCCGGCAGATAAATGTCCACCAGATAATGTTTTGGAAATTCTGAACAGCCAGTTAAGTCAAGAGAACGATGATCCGGAATCAAATTTAACGTCTGTTAGAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

319

Amino Acids

36.82

Weight (kDa)

7.19

Isoelectric Point (pI)

42.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	1 - 215	1.6e-53	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	705
AccIII	TCCGGA	2 cut(s)	651, 925
AciI	CCGC	4 cut(s)	50, 634, 771, 784
AclWI	GGATC	2 cut(s)	794, 917
AcoI	YGGCCR	2 cut(s)	772, 818
AcsI	RAATTY	5 cut(s)	286, 383, 811, 888, 934
AfaI	GTAC	2 cut(s)	74, 166
AgsI	TTSAA	2 cut(s)	268, 731
AjnI	CCWGG	2 cut(s)	398, 525
AluBI	AGCT	5 cut(s)	160, 304, 413, 511, 737
AluI	AGCT	5 cut(s)	160, 304, 413, 511, 737
Alw21I	GWGCWC	1 cut(s)	501
Alw26I	GTCTC	1 cut(s)	569
AlwI	GGATC	2 cut(s)	794, 917
Aor13HI	TCCGGA	2 cut(s)	651, 925
AoxI	GGCC	2 cut(s)	772, 818
ApeKI	GCWGC	1 cut(s)	413
ApoI	RAATTY	5 cut(s)	286, 383, 811, 888, 934
ArsI	GACNNNNNNTTYG	2 cut(s)	926, 958
AseI	ATTAAT	1 cut(s)	533
Asp700I	GAANNNNTTC	1 cut(s)	452
AspS9I	GGNCC	2 cut(s)	599, 654
AsuHPI	GGTGA	3 cut(s)	431, 464, 783
AvaII	GGWCC	2 cut(s)	599, 654
BalI	TGGCCA	1 cut(s)	820
BarI	GAAGNNNNNNTAC	2 cut(s)	293, 325
Bbv12I	GWGCWC	1 cut(s)	501
BbvCI	CCTCAGC	1 cut(s)	83
BbvI	GCAGC	1 cut(s)	400
BccI	CCATC	3 cut(s)	199, 590, 783
BceAI	ACGGC	1 cut(s)	95
BciT130I	CCWGG	2 cut(s)	400, 527
BcoDI	GTCTC	1 cut(s)	569
BfaI	CTAG	2 cut(s)	410, 603
BfmI	CTRYAG	1 cut(s)	543
BisI	GCNGC	2 cut(s)	414, 772
BlsI	GCNGC	2 cut(s)	415, 773
Bme1390I	CCNGG	2 cut(s)	400, 527
Bme18I	GGWCC	2 cut(s)	599, 654
BmgT120I	GGNCC	2 cut(s)	599, 654
BmrFI	CCNGG	2 cut(s)	400, 527
BmsI	GCATC	1 cut(s)	741
BpmI	CTGGAG	1 cut(s)	333
Bpu10I	CCTNAGC	1 cut(s)	83
BpuEI	CTTGAG	1 cut(s)	497
BsaJI	CCNNGG	4 cut(s)	525, 526, 625, 766
BsaWI	WCCGGW	2 cut(s)	651, 925
Bse1I	ACTGG	1 cut(s)	901
Bse3DI	GCAATG	1 cut(s)	384
BseAI	TCCGGA	2 cut(s)	651, 925
BseBI	CCWGG	2 cut(s)	400, 527
BseDI	CCNNGG	4 cut(s)	525, 526, 625, 766
BseMI	GCAATG	1 cut(s)	384
BseMII	CTCAG	3 cut(s)	74, 516, 786
BseNI	ACTGG	1 cut(s)	901
BseRI	GAGGAG	1 cut(s)	557
BseXI	GCAGC	1 cut(s)	400
BseYI	CCCAGC	1 cut(s)	224
BsgI	GTGCAG	1 cut(s)	109
Bsh1236I	CGCG	1 cut(s)	705
BshFI	GGCC	2 cut(s)	774, 820
BsiHKAI	GWGCWC	1 cut(s)	501
BsiSI	CCGG	3 cut(s)	652, 854, 926
BsmAI	GTCTC	1 cut(s)	569
BsmI	GAATGC	1 cut(s)	830
BsnI	GGCC	2 cut(s)	774, 820
Bsp1286I	GDGCHC	1 cut(s)	501
Bsp13I	TCCGGA	2 cut(s)	651, 925
Bsp143I	GATC	3 cut(s)	700, 786, 922
Bsp68I	TCGCGA	1 cut(s)	705
BspACI	CCGC	4 cut(s)	50, 634, 771, 784
BspANI	GGCC	2 cut(s)	774, 820
BspCNI	CTCAG	3 cut(s)	75, 515, 787
BspEI	TCCGGA	2 cut(s)	651, 925
BspFNI	CGCG	1 cut(s)	705
BspHI	TCATGA	1 cut(s)	444
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	2 cut(s)	794, 917
BspQI	GCTCTTC	1 cut(s)	316
BsrDI	GCAATG	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	901
BssECI	CCNNGG	4 cut(s)	525, 526, 625, 766
BssMI	GATC	3 cut(s)	700, 786, 922
BssT1I	CCWWGG	2 cut(s)	625, 766
Bst2UI	CCWGG	2 cut(s)	400, 527
Bst6I	CTCTTC	2 cut(s)	316, 348
BstAPI	GCANNNNNTGC	1 cut(s)	751
BstC8I	GCNNGC	1 cut(s)	216
BstDEI	CTNAG	3 cut(s)	83, 502, 795
BstFNI	CGCG	1 cut(s)	705
BstKTI	GATC	3 cut(s)	703, 789, 925
BstMAI	GTCTC	1 cut(s)	569
BstMBI	GATC	3 cut(s)	700, 786, 922
BstMWI	GCNNNNNNNGC	1 cut(s)	751
BstNI	CCWGG	2 cut(s)	400, 527
BstSCI	CCNGG	2 cut(s)	398, 525
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	705
BstV1I	GCAGC	1 cut(s)	400
BstX2I	RGATCY	1 cut(s)	786
BstYI	RGATCY	1 cut(s)	786
BsuRI	GGCC	2 cut(s)	774, 820
BtsI	GCAGTG	1 cut(s)	552
BtsIMutI	CAGTG	1 cut(s)	552
BtuMI	TCGCGA	1 cut(s)	705
Cac8I	GCNNGC	1 cut(s)	216
CciI	TCATGA	1 cut(s)	444
Cfr13I	GGNCC	2 cut(s)	599, 654
Csp6I	GTAC	2 cut(s)	73, 165
CviAII	CATG	5 cut(s)	11, 104, 181, 445, 556
CviQI	GTAC	2 cut(s)	73, 165
DdeI	CTNAG	3 cut(s)	83, 502, 795
DpnI	GATC	3 cut(s)	702, 788, 924
DpnII	GATC	3 cut(s)	700, 786, 922
EaeI	YGGCCR	2 cut(s)	772, 818
Eam1104I	CTCTTC	2 cut(s)	316, 348
EarI	CTCTTC	2 cut(s)	316, 348
EciI	GGCGGA	1 cut(s)	65
Eco130I	CCWWGG	2 cut(s)	625, 766
Eco32I	GATATC	1 cut(s)	238
Eco47I	GGWCC	2 cut(s)	599, 654
EcoRII	CCWGG	2 cut(s)	398, 525
EcoRV	GATATC	1 cut(s)	238
EcoT14I	CCWWGG	2 cut(s)	625, 766
ErhI	CCWWGG	2 cut(s)	625, 766
FaeI	CATG	5 cut(s)	14, 107, 184, 448, 559
FatI	CATG	5 cut(s)	10, 103, 180, 444, 555
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	414, 772
Fsp4HI	GCNGC	2 cut(s)	414, 772
FspBI	CTAG	2 cut(s)	410, 603
GluI	GCNGC	2 cut(s)	414, 772
GsaI	CCCAGC	1 cut(s)	228
GsuI	CTGGAG	1 cut(s)	333
HaeIII	GGCC	2 cut(s)	774, 820
HapII	CCGG	3 cut(s)	652, 854, 926
Hin1II	CATG	5 cut(s)	14, 107, 184, 448, 559
HincII	GTYRAC	1 cut(s)	97
HindII	GTYRAC	1 cut(s)	97
HindIII	AAGCTT	2 cut(s)	158, 302
HinfI	GANTC	4 cut(s)	441, 797, 850, 929
HpaI	GTTAAC	1 cut(s)	97
HpaII	CCGG	3 cut(s)	652, 854, 926
HphI	GGTGA	3 cut(s)	431, 464, 783
Hpy166II	GTNNAC	5 cut(s)	97, 167, 310, 422, 869
Hpy188I	TCNGA	5 cut(s)	111, 332, 505, 574, 894
Hpy188III	TCNNGA	6 cut(s)	350, 445, 652, 704, 911, 926
Hpy8I	GTNNAC	5 cut(s)	97, 167, 310, 422, 869
HpyCH4IV	ACGT	1 cut(s)	941
HpyCH4V	TGCA	3 cut(s)	90, 293, 545
HpyF10VI	GCNNNNNNNGC	1 cut(s)	751
HpyF3I	CTNAG	3 cut(s)	83, 502, 795
HpySE526I	ACGT	1 cut(s)	941
Hsp92II	CATG	5 cut(s)	14, 107, 184, 448, 559
Kpn2I	TCCGGA	2 cut(s)	651, 925
KspAI	GTTAAC	1 cut(s)	97
Kzo9I	GATC	3 cut(s)	700, 786, 922
LguI	GCTCTTC	1 cut(s)	316
LmnI	GCTCC	3 cut(s)	7, 496, 691
Lsp1109I	GCAGC	1 cut(s)	400
LweI	GCATC	1 cut(s)	741
MaeI	CTAG	2 cut(s)	410, 603
MaeII	ACGT	1 cut(s)	941
MaeIII	GTNAC	1 cut(s)	173
MalI	GATC	3 cut(s)	702, 788, 924
MboI	GATC	3 cut(s)	700, 786, 922
MboII	GAAGA	7 cut(s)	65, 185, 280, 333, 365, 685, 743
MflI	RGATCY	1 cut(s)	786
MhlI	GDGCHC	1 cut(s)	501
MlsI	TGGCCA	1 cut(s)	820
MluCI	AATT	9 cut(s)	57, 286, 383, 391, 487, 660, 811, 888, 934
MluNI	TGGCCA	1 cut(s)	820
MlyI	GAGTC	1 cut(s)	806
MnlI	CCTC	5 cut(s)	78, 349, 480, 578, 647
Mox20I	TGGCCA	1 cut(s)	820
MroI	TCCGGA	2 cut(s)	651, 925
MroXI	GAANNNNTTC	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	820
MseI	TTAA	9 cut(s)	96, 117, 137, 243, 344, 387, 533, 905, 938
MslI	CAYNNNNRTG	1 cut(s)	504
Msp20I	TGGCCA	1 cut(s)	820
MspI	CCGG	3 cut(s)	652, 854, 926
MspR9I	CCNGG	2 cut(s)	400, 527
Mva1269I	GAATGC	1 cut(s)	830
MvaI	CCWGG	2 cut(s)	400, 527
MvnI	CGCG	1 cut(s)	705
MwoI	GCNNNNNNNGC	1 cut(s)	751
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	3 cut(s)	700, 786, 922
NlaIII	CATG	5 cut(s)	14, 107, 184, 448, 559
NmeAIII	GCCGAG	1 cut(s)	94
NmuCI	GTSAC	1 cut(s)	173
NruI	TCGCGA	1 cut(s)	705
PagI	TCATGA	1 cut(s)	444
PasI	CCCWGGG	1 cut(s)	526
PciSI	GCTCTTC	1 cut(s)	316
PctI	GAATGC	1 cut(s)	830
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	3 cut(s)	441, 850, 929
PkrI	GCNGC	2 cut(s)	415, 773
PleI	GAGTC	1 cut(s)	805
PpsI	GAGTC	1 cut(s)	805
PshBI	ATTAAT	1 cut(s)	533
Psp6I	CCWGG	2 cut(s)	398, 525
PspFI	CCCAGC	1 cut(s)	224
PspGI	CCWGG	2 cut(s)	398, 525
PspPI	GGNCC	2 cut(s)	599, 654
PstI	CTGCAG	1 cut(s)	547
PsuI	RGATCY	1 cut(s)	786
RruI	TCGCGA	1 cut(s)	705
RsaI	GTAC	2 cut(s)	74, 166
RsaNI	GTAC	2 cut(s)	73, 165
RseI	CAYNNNNRTG	1 cut(s)	504
SapI	GCTCTTC	1 cut(s)	316
SaqAI	TTAA	9 cut(s)	96, 117, 137, 243, 344, 387, 533, 905, 938
SatI	GCNGC	2 cut(s)	414, 772
Sau3AI	GATC	3 cut(s)	700, 786, 922
Sau96I	GGNCC	2 cut(s)	599, 654
SchI	GAGTC	1 cut(s)	806
ScrFI	CCNGG	2 cut(s)	400, 527
SduI	GDGCHC	1 cut(s)	501
SfaNI	GCATC	1 cut(s)	741
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	2 cut(s)	599, 654
SmiMI	CAYNNNNRTG	1 cut(s)	504
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	9 cut(s)	57, 286, 383, 391, 487, 660, 811, 888, 934
SsiI	CCGC	4 cut(s)	50, 634, 771, 784
SspI	AATATT	1 cut(s)	127
SspMI	CTAG	2 cut(s)	410, 603
StyD4I	CCNGG	2 cut(s)	398, 525
StyI	CCWWGG	2 cut(s)	625, 766
TaiI	ACGT	1 cut(s)	944
TaqI	TCGA	1 cut(s)	277
TaqII	GACCGA	1 cut(s)	350
TasI	AATT	9 cut(s)	57, 286, 383, 391, 487, 660, 811, 888, 934
TauI	GCSGC	1 cut(s)	774
TfiI	GAWTC	3 cut(s)	441, 850, 929
Tru1I	TTAA	9 cut(s)	96, 117, 137, 243, 344, 387, 533, 905, 938
Tru9I	TTAA	9 cut(s)	96, 117, 137, 243, 344, 387, 533, 905, 938
TscAI	CASTG	1 cut(s)	552
TseFI	GTSAC	1 cut(s)	173
TseI	GCWGC	1 cut(s)	413
Tsp45I	GTSAC	1 cut(s)	173
TspDTI	ATGAA	7 cut(s)	17, 146, 169, 297, 433, 461, 685
TspGWI	ACGGA	1 cut(s)	446
TspRI	CASTG	1 cut(s)	552
VpaK11BI	GGWCC	2 cut(s)	599, 654
VspI	ATTAAT	1 cut(s)	533
XapI	RAATTY	5 cut(s)	286, 383, 811, 888, 934
XmnI	GAANNNNTTC	1 cut(s)	452
XspI	CTAG	2 cut(s)	410, 603

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.