Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

36521135 .. 36521912

Gene Structure 778 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG184100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGTGCTTTGATATCTTTAACCCAAGAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTATGAGGAAAGAAGAGCAATCGGAAAATGCCCATTAACTCCAGAAGAGGTCGGTCTTATTTTACACGCAATGGAATTGAACAATTCTACCAGGATATACCTAGCAGCTGGTAAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACAGTTCTGTGGAACACTCAGATGAGCTACCAGTGAACACACAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTCCCTGATATTTTTATGCCTACATATGATGGACCTAGCAACATTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTCCAATCTTCATTGATCGCAAGAAAGGACAAAAAGCTGGTTTTGAAGAAGCTGTTAGGCAAGTGATGCTAAAAACAAACCTCGGCGGCCCTCACAAGCGGATCTCACCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

190

Amino Acids

21.67

Weight (kDa)

9.26

Isoelectric Point (pI)

41.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	2 - 140	1.4e-25	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	426
AciI	CCGC	3 cut(s)	409, 546, 559
AclWI	GGATC	1 cut(s)	569
AcsI	RAATTY	1 cut(s)	61
AgsI	TTSAA	3 cut(s)	43, 163, 506
AjnI	CCWGG	1 cut(s)	173
AluBI	AGCT	5 cut(s)	79, 191, 286, 497, 512
AluI	AGCT	5 cut(s)	79, 191, 286, 497, 512
Alw26I	GTCTC	1 cut(s)	344
AlwI	GGATC	1 cut(s)	569
Aor13HI	TCCGGA	1 cut(s)	426
AoxI	GGCC	1 cut(s)	547
ApeKI	GCWGC	1 cut(s)	188
ApoI	RAATTY	1 cut(s)	61
AseI	ATTAAT	1 cut(s)	308
Asp700I	GAANNNNTTC	1 cut(s)	227
AspS9I	GGNCC	3 cut(s)	374, 429, 548
AsuHPI	GGTGA	2 cut(s)	239, 558
AvaII	GGWCC	2 cut(s)	374, 429
BbvI	GCAGC	1 cut(s)	200
BccI	CCATC	1 cut(s)	365
BciT130I	CCWGG	1 cut(s)	175
BcoDI	GTCTC	1 cut(s)	344
BfaI	CTAG	3 cut(s)	185, 378, 571
BfmI	CTRYAG	1 cut(s)	318
BisI	GCNGC	2 cut(s)	189, 547
BlsI	GCNGC	2 cut(s)	190, 548
Bme1390I	CCNGG	1 cut(s)	175
Bme18I	GGWCC	2 cut(s)	374, 429
BmgT120I	GGNCC	3 cut(s)	374, 429, 548
BmrFI	CCNGG	1 cut(s)	175
BmsI	GCATC	1 cut(s)	516
BpmI	CTGGAG	1 cut(s)	108
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	400, 541
BsaWI	WCCGGW	1 cut(s)	426
Bse1I	ACTGG	1 cut(s)	290
Bse3DI	GCAATG	2 cut(s)	159, 384
BseAI	TCCGGA	1 cut(s)	426
BseBI	CCWGG	1 cut(s)	175
BseDI	CCNNGG	2 cut(s)	400, 541
BseMI	GCAATG	2 cut(s)	159, 384
BseMII	CTCAG	1 cut(s)	291
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	1 cut(s)	332
BseXI	GCAGC	1 cut(s)	200
BshFI	GGCC	1 cut(s)	549
BsiSI	CCGG	1 cut(s)	427
BsmAI	GTCTC	1 cut(s)	344
BsnI	GGCC	1 cut(s)	549
Bsp13I	TCCGGA	1 cut(s)	426
Bsp143I	GATC	2 cut(s)	475, 561
BspACI	CCGC	3 cut(s)	409, 546, 559
BspANI	GGCC	1 cut(s)	549
BspCNI	CTCAG	1 cut(s)	290
BspEI	TCCGGA	1 cut(s)	426
BspHI	TCATGA	1 cut(s)	219
BspMAI	CTGCAG	1 cut(s)	322
BspPI	GGATC	1 cut(s)	569
BspQI	GCTCTTC	1 cut(s)	91
BsrDI	GCAATG	2 cut(s)	159, 384
BsrI	ACTGG	1 cut(s)	290
BssECI	CCNNGG	2 cut(s)	400, 541
BssMI	GATC	2 cut(s)	475, 561
BssT1I	CCWWGG	1 cut(s)	400
Bst2UI	CCWGG	1 cut(s)	175
Bst4CI	ACNGT	1 cut(s)	263
Bst6I	CTCTTC	2 cut(s)	91, 123
BstAPI	GCANNNNNTGC	1 cut(s)	526
BstDEI	CTNAG	1 cut(s)	277
BstKTI	GATC	2 cut(s)	478, 564
BstMAI	GTCTC	1 cut(s)	344
BstMBI	GATC	2 cut(s)	475, 561
BstMWI	GCNNNNNNNGC	1 cut(s)	526
BstNI	CCWGG	1 cut(s)	175
BstSCI	CCNGG	1 cut(s)	173
BstSFI	CTRYAG	1 cut(s)	318
BstV1I	GCAGC	1 cut(s)	200
BstX2I	RGATCY	1 cut(s)	561
BstYI	RGATCY	1 cut(s)	561
BsuRI	GGCC	1 cut(s)	549
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	2 cut(s)	297, 327
CciI	TCATGA	1 cut(s)	219
Cfr13I	GGNCC	3 cut(s)	374, 429, 548
CviAII	CATG	2 cut(s)	220, 331
CviJI	RGCY	7 cut(s)	79, 191, 286, 455, 497, 512, 549
CviKI_1	RGCY	7 cut(s)	79, 191, 286, 455, 497, 512, 549
DdeI	CTNAG	1 cut(s)	277
DpnI	GATC	2 cut(s)	477, 563
DpnII	GATC	2 cut(s)	475, 561
Eam1104I	CTCTTC	2 cut(s)	91, 123
EarI	CTCTTC	2 cut(s)	91, 123
Eco130I	CCWWGG	1 cut(s)	400
Eco32I	GATATC	1 cut(s)	13
Eco47I	GGWCC	2 cut(s)	374, 429
EcoRII	CCWGG	1 cut(s)	173
EcoRV	GATATC	1 cut(s)	13
EcoT14I	CCWWGG	1 cut(s)	400
ErhI	CCWWGG	1 cut(s)	400
FaeI	CATG	2 cut(s)	223, 334
FaiI	YATR	8 cut(s)	87, 181, 221, 332, 359, 367, 369, 420
FatI	CATG	2 cut(s)	219, 330
FauNDI	CATATG	1 cut(s)	367
Fnu4HI	GCNGC	2 cut(s)	189, 547
Fsp4HI	GCNGC	2 cut(s)	189, 547
FspBI	CTAG	3 cut(s)	185, 378, 571
GluI	GCNGC	2 cut(s)	189, 547
GsuI	CTGGAG	1 cut(s)	108
HaeIII	GGCC	1 cut(s)	549
HapII	CCGG	1 cut(s)	427
Hin1II	CATG	2 cut(s)	223, 334
HindIII	AAGCTT	1 cut(s)	77
HinfI	GANTC	1 cut(s)	216
HpaII	CCGG	1 cut(s)	427
HphI	GGTGA	2 cut(s)	239, 558
Hpy166II	GTNNAC	2 cut(s)	197, 295
Hpy188I	TCNGA	2 cut(s)	107, 280
Hpy188III	TCNNGA	3 cut(s)	125, 220, 427
Hpy8I	GTNNAC	2 cut(s)	197, 295
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4V	TGCA	2 cut(s)	68, 320
HpyF10VI	GCNNNNNNNGC	1 cut(s)	526
HpyF3I	CTNAG	1 cut(s)	277
Hsp92II	CATG	2 cut(s)	223, 334
Kpn2I	TCCGGA	1 cut(s)	426
Kzo9I	GATC	2 cut(s)	475, 561
LguI	GCTCTTC	1 cut(s)	91
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	1 cut(s)	200
LweI	GCATC	1 cut(s)	516
MaeI	CTAG	3 cut(s)	185, 378, 571
MalI	GATC	2 cut(s)	477, 563
MboI	GATC	2 cut(s)	475, 561
MboII	GAAGA	5 cut(s)	55, 108, 140, 460, 518
MflI	RGATCY	1 cut(s)	561
MluCI	AATT	4 cut(s)	61, 158, 166, 435
MnlI	CCTC	7 cut(s)	82, 124, 255, 353, 422, 551, 561
MroI	TCCGGA	1 cut(s)	426
MroXI	GAANNNNTTC	1 cut(s)	227
MseI	TTAA	3 cut(s)	18, 119, 308
MslI	CAYNNNNRTG	1 cut(s)	279
MspA1I	CMGCKG	1 cut(s)	191
MspI	CCGG	1 cut(s)	427
MspR9I	CCNGG	1 cut(s)	175
MvaI	CCWGG	1 cut(s)	175
MwoI	GCNNNNNNNGC	1 cut(s)	526
NdeI	CATATG	1 cut(s)	367
NdeII	GATC	2 cut(s)	475, 561
NlaIII	CATG	2 cut(s)	223, 334
NmeAIII	GCCGAG	1 cut(s)	522
PagI	TCATGA	1 cut(s)	219
PciSI	GCTCTTC	1 cut(s)	91
PdmI	GAANNNNTTC	1 cut(s)	227
PfeI	GAWTC	1 cut(s)	216
PkrI	GCNGC	2 cut(s)	190, 548
PshBI	ATTAAT	1 cut(s)	308
Psp6I	CCWGG	1 cut(s)	173
PspGI	CCWGG	1 cut(s)	173
PspPI	GGNCC	3 cut(s)	374, 429, 548
PstI	CTGCAG	1 cut(s)	322
PsuI	RGATCY	1 cut(s)	561
PvuII	CAGCTG	1 cut(s)	191
RseI	CAYNNNNRTG	1 cut(s)	279
SapI	GCTCTTC	1 cut(s)	91
SaqAI	TTAA	3 cut(s)	18, 119, 308
SatI	GCNGC	2 cut(s)	189, 547
Sau3AI	GATC	2 cut(s)	475, 561
Sau96I	GGNCC	3 cut(s)	374, 429, 548
ScrFI	CCNGG	1 cut(s)	175
SfaNI	GCATC	1 cut(s)	516
SfcI	CTRYAG	1 cut(s)	318
SinI	GGWCC	2 cut(s)	374, 429
SmiMI	CAYNNNNRTG	1 cut(s)	279
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	61, 158, 166, 435
SsiI	CCGC	3 cut(s)	409, 546, 559
SspMI	CTAG	3 cut(s)	185, 378, 571
StyD4I	CCNGG	1 cut(s)	173
StyI	CCWWGG	1 cut(s)	400
TaaI	ACNGT	1 cut(s)	263
TaqI	TCGA	1 cut(s)	52
TaqII	GACCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	61, 158, 166, 435
TauI	GCSGC	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	216
Tru1I	TTAA	3 cut(s)	18, 119, 308
Tru9I	TTAA	3 cut(s)	18, 119, 308
TscAI	CASTG	2 cut(s)	297, 327
TseI	GCWGC	1 cut(s)	188
TspDTI	ATGAA	4 cut(s)	72, 208, 236, 460
TspGWI	ACGGA	1 cut(s)	221
TspRI	CASTG	2 cut(s)	297, 327
VpaK11BI	GGWCC	2 cut(s)	374, 429
VspI	ATTAAT	1 cut(s)	308
XapI	RAATTY	1 cut(s)	61
XmnI	GAANNNNTTC	1 cut(s)	227
XspI	CTAG	3 cut(s)	185, 378, 571

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.