Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0037565.1

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Reverse (-)

191 .. 2017

Gene Structure 1827 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0037565.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 600 bp

ctgcacttatgcttctattttgtggcagctccaccaagcgagactaatggctacctacgtgtgcgctgcaatggtggtctcaatcaacaacgtactgcgatctgcaatgcagttctggcagcaagaataatgaacgctacccttgtgctgccggaattggatgcaaactcattttggcatgatgacagtggttttcagggaatctatgatgttgagcatttcatcaagtcattaaggtttgatgtaaatattgtagaaaagatgcccgaaattcgcaaaaatgggaagaccaagaagattaaagctgtacagctccgaccaccaagagatgctcctatcagttggtatactacagatgctcttcagaaaatgaaggagcatggggctatctatctaactcccttttcacatcgtttggcggaagaaattgacaacgccgagtaccaacggctgaggtgcagggttaactatcatgctctgatatttaagccaaatattatgaagttaagtcaatcaatagttgataagctccgtacacaaggtcacttcatgtctatacatcttcgttttgagatggatatgctggcatttgctgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

199

Amino Acids

22.94

Weight (kDa)

9.19

Isoelectric Point (pI)

41.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	347
AciI	CCGC	1 cut(s)	419
AcsI	RAATTY	1 cut(s)	270
AcuI	CTGAAG	1 cut(s)	347
AfaI	GTAC	4 cut(s)	94, 309, 443, 535
AflIII	ACRYGT	1 cut(s)	58
AluBI	AGCT	4 cut(s)	29, 305, 313, 529
AluI	AGCT	4 cut(s)	29, 305, 313, 529
Alw26I	GTCTC	2 cut(s)	35, 83
ApeKI	GCWGC	4 cut(s)	26, 66, 119, 148
ApoI	RAATTY	1 cut(s)	270
AspLEI	GCGC	1 cut(s)	66
BbsI	GAAGAC	1 cut(s)	293
BbvCI	CCTCAGC	1 cut(s)	452
BbvI	GCAGC	4 cut(s)	38, 53, 131, 135
BccI	CCATC	1 cut(s)	568
BceAI	ACGGC	1 cut(s)	464
BcoDI	GTCTC	2 cut(s)	35, 83
BfmI	CTRYAG	1 cut(s)	351
BisI	GCNGC	4 cut(s)	27, 67, 120, 149
BlsI	GCNGC	4 cut(s)	28, 68, 121, 150
BmsI	GCATC	4 cut(s)	151, 252, 319, 346
BpiI	GAAGAC	1 cut(s)	293
Bpu10I	CCTNAGC	1 cut(s)	452
BsaAI	YACGTR	1 cut(s)	59
BsaI	GGTCTC	1 cut(s)	83
Bse3DI	GCAATG	2 cut(s)	76, 112
BseGI	GGATG	1 cut(s)	166
BseMI	GCAATG	2 cut(s)	76, 112
BseMII	CTCAG	1 cut(s)	443
BseXI	GCAGC	4 cut(s)	38, 53, 131, 135
BseYI	CCCAGC	1 cut(s)	593
BsgI	GTGCAG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	152
BsmAI	GTCTC	2 cut(s)	35, 83
Bso31I	GGTCTC	1 cut(s)	83
Bsp1407I	TGTACA	1 cut(s)	307
Bsp143I	GATC	1 cut(s)	99
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	444
BspQI	GCTCTTC	1 cut(s)	366
BspTNI	GGTCTC	1 cut(s)	83
BsrDI	GCAATG	2 cut(s)	76, 112
BsrGI	TGTACA	1 cut(s)	307
BssMI	GATC	1 cut(s)	99
BssNAI	GTATAC	1 cut(s)	348
Bst1107I	GTATAC	1 cut(s)	348
Bst4CI	ACNGT	1 cut(s)	188
Bst6I	CTCTTC	1 cut(s)	366
BstAUI	TGTACA	1 cut(s)	307
BstBAI	YACGTR	1 cut(s)	59
BstC8I	GCNNGC	1 cut(s)	585
BstDEI	CTNAG	1 cut(s)	452
BstF5I	GGATG	1 cut(s)	166
BstHHI	GCGC	1 cut(s)	66
BstKTI	GATC	1 cut(s)	102
BstMAI	GTCTC	2 cut(s)	35, 83
BstMBI	GATC	1 cut(s)	99
BstMWI	GCNNNNNNNGC	1 cut(s)	116
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	4 cut(s)	38, 53, 131, 135
BstV2I	GAAGAC	1 cut(s)	293
BstZ17I	GTATAC	1 cut(s)	348
BtsCI	GGATG	1 cut(s)	166
BtsIMutI	CAGTG	1 cut(s)	193
Cac8I	GCNNGC	1 cut(s)	585
CfoI	GCGC	1 cut(s)	66
Csp6I	GTAC	4 cut(s)	93, 308, 442, 534
CviAII	CATG	4 cut(s)	179, 380, 473, 550
CviJI	RGCY	8 cut(s)	29, 51, 305, 313, 386, 451, 490, 529
CviKI_1	RGCY	8 cut(s)	29, 51, 305, 313, 386, 451, 490, 529
CviQI	GTAC	4 cut(s)	93, 308, 442, 534
DdeI	CTNAG	1 cut(s)	452
DpnI	GATC	1 cut(s)	101
DpnII	GATC	1 cut(s)	99
Eam1104I	CTCTTC	1 cut(s)	366
EarI	CTCTTC	1 cut(s)	366
EciI	GGCGGA	1 cut(s)	434
Eco31I	GGTCTC	1 cut(s)	83
Eco57I	CTGAAG	1 cut(s)	347
FaeI	CATG	4 cut(s)	182, 383, 476, 553
FatI	CATG	4 cut(s)	178, 379, 472, 549
FblI	GTMKAC	1 cut(s)	347
Fnu4HI	GCNGC	4 cut(s)	27, 67, 120, 149
FokI	GGATG	1 cut(s)	173
Fsp4HI	GCNGC	4 cut(s)	27, 67, 120, 149
GlaI	GCGC	1 cut(s)	65
GluI	GCNGC	4 cut(s)	27, 67, 120, 149
GsaI	CCCAGC	1 cut(s)	597
HapII	CCGG	1 cut(s)	152
HhaI	GCGC	1 cut(s)	66
Hin1II	CATG	4 cut(s)	182, 383, 476, 553
Hin6I	GCGC	1 cut(s)	64
HinP1I	GCGC	1 cut(s)	64
HincII	GTYRAC	1 cut(s)	466
HindII	GTYRAC	1 cut(s)	466
HinfI	GANTC	1 cut(s)	201
HpaI	GTTAAC	1 cut(s)	466
HpaII	CCGG	1 cut(s)	152
Hpy166II	GTNNAC	3 cut(s)	348, 466, 536
Hpy188I	TCNGA	3 cut(s)	317, 366, 480
Hpy8I	GTNNAC	3 cut(s)	348, 466, 536
HpyAV	CCTTC	1 cut(s)	367
HpyCH4III	ACNGT	1 cut(s)	188
HpyCH4IV	ACGT	2 cut(s)	58, 91
HpyCH4V	TGCA	6 cut(s)	4, 69, 105, 110, 164, 459
HpyF10VI	GCNNNNNNNGC	1 cut(s)	116
HpyF3I	CTNAG	1 cut(s)	452
HpySE526I	ACGT	2 cut(s)	58, 91
Hsp92II	CATG	4 cut(s)	182, 383, 476, 553
HspAI	GCGC	1 cut(s)	64
KspAI	GTTAAC	1 cut(s)	466
Kzo9I	GATC	1 cut(s)	99
LguI	GCTCTTC	1 cut(s)	366
LmnI	GCTCC	5 cut(s)	34, 318, 337, 376, 534
LpnPI	CCDG	6 cut(s)	101, 165, 182, 445, 569, 579
Lsp1109I	GCAGC	4 cut(s)	38, 53, 131, 135
LweI	GCATC	4 cut(s)	151, 252, 319, 346
MaeII	ACGT	2 cut(s)	58, 91
MaeIII	GTNAC	1 cut(s)	542
MalI	GATC	1 cut(s)	101
MboI	GATC	1 cut(s)	99
MboII	GAAGA	5 cut(s)	298, 307, 353, 434, 554
MluCI	AATT	3 cut(s)	155, 270, 426
MmeI	TCCRAC	1 cut(s)	340
MnlI	CCTC	1 cut(s)	447
MseI	TTAA	5 cut(s)	233, 300, 465, 486, 506
MspI	CCGG	1 cut(s)	152
MwoI	GCNNNNNNNGC	1 cut(s)	116
NdeII	GATC	1 cut(s)	99
NlaIII	CATG	4 cut(s)	182, 383, 476, 553
NmeAIII	GCCGAG	1 cut(s)	463
NmuCI	GTSAC	1 cut(s)	542
PciSI	GCTCTTC	1 cut(s)	366
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	4 cut(s)	28, 68, 121, 150
Ppu21I	YACGTR	1 cut(s)	59
PspFI	CCCAGC	1 cut(s)	593
RsaI	GTAC	4 cut(s)	94, 309, 443, 535
RsaNI	GTAC	4 cut(s)	93, 308, 442, 534
SapI	GCTCTTC	1 cut(s)	366
SaqAI	TTAA	5 cut(s)	233, 300, 465, 486, 506
SatI	GCNGC	4 cut(s)	27, 67, 120, 149
Sau3AI	GATC	1 cut(s)	99
SfaNI	GCATC	4 cut(s)	151, 252, 319, 346
SfcI	CTRYAG	1 cut(s)	351
Sse9I	AATT	3 cut(s)	155, 270, 426
SsiI	CCGC	1 cut(s)	419
SspI	AATATT	2 cut(s)	250, 496
TaaI	ACNGT	1 cut(s)	188
TaiI	ACGT	2 cut(s)	61, 94
TasI	AATT	3 cut(s)	155, 270, 426
TatI	WGTACW	1 cut(s)	307
TfiI	GAWTC	1 cut(s)	201
Tru1I	TTAA	5 cut(s)	233, 300, 465, 486, 506
Tru9I	TTAA	5 cut(s)	233, 300, 465, 486, 506
TscAI	CASTG	1 cut(s)	193
TseFI	GTSAC	1 cut(s)	542
TseI	GCWGC	4 cut(s)	26, 66, 119, 148
Tsp45I	GTSAC	1 cut(s)	542
TspDTI	ATGAA	5 cut(s)	146, 211, 386, 515, 538
TspGWI	ACGGA	1 cut(s)	521
TspRI	CASTG	1 cut(s)	193
XapI	RAATTY	1 cut(s)	270
XmiI	GTMKAC	1 cut(s)	347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.