Rroxscaffold_5G00358290

GDP-fucose protein O-fucosyltransferase

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Forward (+)
38387304 .. 38388388
1085 bp
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UTR
Exon/CDS
Intron
Rroxscaffold_5G00358290.1

Sequence Viewer

Length: 255 bp
ATGCCAACTTCAGTTCCCTCGAATGGACAAATAGTGGGGCTTTATAATCGGCAGCATGCGAAGCAAGTCGGAGGAGGAGCGAGTGTGAAGGCCAAGATTGGGAAGCTATTGCTCGCCGTTGTCGTCCTCTTGATCTGCACCGTTTCCTTGCTCTTTACGTCTGCCTCCACCAGTGGCGGTGCTGCTGGATTTGGCTATCGCTCTGAGGTTAGCGCCTTCAATTTTGATTCCAAAATTGTTGTCTGTGTGTTATAG

Protein Analysis

84

Amino Acids

8.6

Weight (kDa)

9.7

Isoelectric Point (pI)

25.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 45
AciI CCGC 1 cut(s) 177
AfiI CCNNNNNNNGG 2 cut(s) 23, 99
AgsI TTSAA 1 cut(s) 220
AluBI AGCT 1 cut(s) 106
AluI AGCT 1 cut(s) 106
AoxI GGCC 1 cut(s) 90
ApeKI GCWGC 2 cut(s) 52, 182
ArsI GACNNNNNNTTYG 1 cut(s) 225
AspLEI GCGC 1 cut(s) 215
BbvI GCAGC 2 cut(s) 64, 169
BceAI ACGGC 1 cut(s) 101
BfoI RGCGCY 1 cut(s) 216
BisI GCNGC 2 cut(s) 53, 183
BlsI GCNGC 2 cut(s) 54, 184
BsaXI ACNNNNNCTCC 2 cut(s) 69, 99
Bsc4I CCNNNNNNNGG 2 cut(s) 23, 99
Bse1I ACTGG 1 cut(s) 171
BseLI CCNNNNNNNGG 2 cut(s) 23, 99
BseMII CTCAG 1 cut(s) 195
BseNI ACTGG 1 cut(s) 171
BseRI GAGGAG 2 cut(s) 87, 90
BseXI GCAGC 2 cut(s) 64, 169
BsgI GTGCAG 1 cut(s) 121
BshFI GGCC 1 cut(s) 92
BslI CCNNNNNNNGG 2 cut(s) 23, 99
BsnI GGCC 1 cut(s) 92
Bsp143I GATC 1 cut(s) 132
BspACI CCGC 1 cut(s) 177
BspANI GGCC 1 cut(s) 92
BspCNI CTCAG 1 cut(s) 196
BsrI ACTGG 1 cut(s) 171
BssMI GATC 1 cut(s) 132
Bst4CI ACNGT 1 cut(s) 142
BstC8I GCNNGC 2 cut(s) 57, 114
BstDEI CTNAG 1 cut(s) 204
BstH2I RGCGCY 1 cut(s) 216
BstHHI GCGC 1 cut(s) 215
BstKTI GATC 1 cut(s) 135
BstMBI GATC 1 cut(s) 132
BstMWI GCNNNNNNNGC 1 cut(s) 61
BstNSI RCATGY 1 cut(s) 59
BstV1I GCAGC 2 cut(s) 64, 169
BsuRI GGCC 1 cut(s) 92
BtsIMutI CAGTG 1 cut(s) 178
Cac8I GCNNGC 2 cut(s) 57, 114
CfoI GCGC 1 cut(s) 215
CviAII CATG 1 cut(s) 56
CviJI RGCY 4 cut(s) 40, 92, 106, 195
CviKI_1 RGCY 4 cut(s) 40, 92, 106, 195
DdeI CTNAG 1 cut(s) 204
DpnI GATC 1 cut(s) 134
DpnII GATC 1 cut(s) 132
FaeI CATG 1 cut(s) 59
FaiI YATR 3 cut(s) 45, 57, 253
FatI CATG 1 cut(s) 55
Fnu4HI GCNGC 2 cut(s) 53, 183
Fsp4HI GCNGC 2 cut(s) 53, 183
GlaI GCGC 1 cut(s) 214
GluI GCNGC 2 cut(s) 53, 183
HaeII RGCGCY 1 cut(s) 216
HaeIII GGCC 1 cut(s) 92
HhaI GCGC 1 cut(s) 215
Hin1II CATG 1 cut(s) 59
Hin6I GCGC 1 cut(s) 213
HinP1I GCGC 1 cut(s) 213
HinfI GANTC 1 cut(s) 227
Hpy188I TCNGA 2 cut(s) 71, 205
Hpy188III TCNNGA 1 cut(s) 130
HpyAV CCTTC 2 cut(s) 82, 226
HpyCH4III ACNGT 1 cut(s) 142
HpyCH4IV ACGT 1 cut(s) 158
HpyCH4V TGCA 1 cut(s) 138
HpyF10VI GCNNNNNNNGC 1 cut(s) 61
HpyF3I CTNAG 1 cut(s) 204
HpySE526I ACGT 1 cut(s) 158
Hsp92II CATG 1 cut(s) 59
HspAI GCGC 1 cut(s) 213
Kzo9I GATC 1 cut(s) 132
LmnI GCTCC 1 cut(s) 77
LpnPI CCDG 2 cut(s) 171, 184
Lsp1109I GCAGC 2 cut(s) 64, 169
MaeII ACGT 1 cut(s) 158
MalI GATC 1 cut(s) 134
MboI GATC 1 cut(s) 132
MluCI AATT 2 cut(s) 220, 234
MmeI TCCRAC 1 cut(s) 49
MnlI CCTC 6 cut(s) 28, 65, 68, 137, 175, 199
MwoI GCNNNNNNNGC 1 cut(s) 61
NdeII GATC 1 cut(s) 132
NlaIII CATG 1 cut(s) 59
NspI RCATGY 1 cut(s) 59
PaeI GCATGC 1 cut(s) 59
PcsI WCGNNNNNNNCGW 1 cut(s) 120
PfeI GAWTC 1 cut(s) 227
PkrI GCNGC 2 cut(s) 54, 184
PsiI TTATAA 1 cut(s) 45
SatI GCNGC 2 cut(s) 53, 183
Sau3AI GATC 1 cut(s) 132
SetI ASST 3 cut(s) 108, 161, 210
SphI GCATGC 1 cut(s) 59
Sse9I AATT 2 cut(s) 220, 234
SsiI CCGC 1 cut(s) 177
TaaI ACNGT 1 cut(s) 142
TaiI ACGT 1 cut(s) 161
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 220, 234
TfiI GAWTC 1 cut(s) 227
TscAI CASTG 1 cut(s) 178
TseI GCWGC 2 cut(s) 52, 182
TspRI CASTG 1 cut(s) 178
XceI RCATGY 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.