Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Reverse (-)

43349179 .. 43352077

Gene Structure 2899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG244900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGCAAGAATTGAAGCAATGCGAAGAGCGGGGCTTTATAATCGGCAGCATGCGAAGCAAGTGGGGAGGAGGAGCAAGTGTGAAGGCCAAGATTGGGAAGCTGTTGCTCGCCGTTGTCGTCCTCTTGATCTGCACCGTTTCCTTGCTCTTTACGTCCGCCTCCGCCTGTGGCGGTGCTGCTGGATCTGGCTACCGCTCTGAGATCAATTTGGAAAAACTTTGGAGAAGTGCTGACACTGGAGGTTGGAGGCCGTCGTCAGCTCCACGATCGGATTGGCCTCCTCCACCAAGCGAGACTAACGGCTACCTACGTGTGCGCTGTAATGGTGGTCTCAATCAACAACGTACTGCGATCTGTAATGCAGTTCTGGCAGCAAGAATAATGAATGCTACCCTTGTGCTGCCAGAATTGGATGCAAACTCATTTTGGCATGATGACAGTGGTTTTCAGGGAATCTATGATGTTGAGCATTTCATCAAGTCATTAAGGTTTGATATAAATATTGTAGAAAAGATGCCTGAAATTCGCAAAAATGGGAAGACCAAGAAGATAAAAGCTGTACAGCTCCGACCACCAAGAGATGCTCCTATCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

198

Amino Acids

21.7

Weight (kDa)

9.54

Isoelectric Point (pI)

46.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	102 - 182	6.1e-28	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	38
AccBSI	CCGCTC	2 cut(s)	28, 195
AciI	CCGC	5 cut(s)	28, 156, 162, 171, 193
AclWI	GGATC	1 cut(s)	190
AcsI	RAATTY	1 cut(s)	522
AfaI	GTAC	2 cut(s)	346, 561
AfiI	CCNNNNNNNGG	1 cut(s)	93
AflIII	ACRYGT	1 cut(s)	310
AgsI	TTSAA	1 cut(s)	13
AluBI	AGCT	4 cut(s)	100, 260, 557, 565
AluI	AGCT	4 cut(s)	100, 260, 557, 565
Alw26I	GTCTC	2 cut(s)	287, 335
AlwI	GGATC	1 cut(s)	190
AoxI	GGCC	3 cut(s)	84, 248, 275
ApeKI	GCWGC	4 cut(s)	45, 176, 371, 400
ApoI	RAATTY	1 cut(s)	522
AspLEI	GCGC	1 cut(s)	318
BbsI	GAAGAC	1 cut(s)	545
BbvI	GCAGC	4 cut(s)	57, 163, 383, 387
BceAI	ACGGC	3 cut(s)	95, 235, 316
BcoDI	GTCTC	2 cut(s)	287, 335
BisI	GCNGC	4 cut(s)	46, 177, 372, 401
BlsI	GCNGC	4 cut(s)	47, 178, 373, 402
BmsI	GCATC	3 cut(s)	403, 504, 571
BpiI	GAAGAC	1 cut(s)	545
BpmI	CTGGAG	1 cut(s)	258
BsaAI	YACGTR	1 cut(s)	311
BsaI	GGTCTC	1 cut(s)	335
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	1 cut(s)	93
Bse1I	ACTGG	1 cut(s)	241
Bse3DI	GCAATG	1 cut(s)	23
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	1 cut(s)	93
BseMI	GCAATG	1 cut(s)	23
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	241
BseRI	GAGGAG	3 cut(s)	81, 84, 270
BseXI	GCAGC	4 cut(s)	57, 163, 383, 387
BsgI	GTGCAG	1 cut(s)	115
Bsh1285I	CGRYCG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	86, 250, 277
BsiEI	CGRYCG	1 cut(s)	269
BslI	CCNNNNNNNGG	1 cut(s)	93
BsmAI	GTCTC	2 cut(s)	287, 335
BsmI	GAATGC	1 cut(s)	391
BsnI	GGCC	3 cut(s)	86, 250, 277
Bso31I	GGTCTC	1 cut(s)	335
Bsp1407I	TGTACA	1 cut(s)	559
Bsp143I	GATC	5 cut(s)	126, 182, 201, 266, 351
BspACI	CCGC	5 cut(s)	28, 156, 162, 171, 193
BspANI	GGCC	3 cut(s)	86, 250, 277
BspCNI	CTCAG	1 cut(s)	190
BspPI	GGATC	1 cut(s)	190
BspQI	GCTCTTC	1 cut(s)	18
BspTNI	GGTCTC	1 cut(s)	335
BsrBI	CCGCTC	2 cut(s)	28, 195
BsrDI	GCAATG	1 cut(s)	23
BsrGI	TGTACA	1 cut(s)	559
BsrI	ACTGG	1 cut(s)	241
BssMI	GATC	5 cut(s)	126, 182, 201, 266, 351
Bst4CI	ACNGT	2 cut(s)	136, 440
Bst6I	CTCTTC	1 cut(s)	18
BstAUI	TGTACA	1 cut(s)	559
BstBAI	YACGTR	1 cut(s)	311
BstC8I	GCNNGC	2 cut(s)	50, 108
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	418
BstHHI	GCGC	1 cut(s)	318
BstKTI	GATC	5 cut(s)	129, 185, 204, 269, 354
BstMAI	GTCTC	2 cut(s)	287, 335
BstMBI	GATC	5 cut(s)	126, 182, 201, 266, 351
BstMCI	CGRYCG	1 cut(s)	269
BstMWI	GCNNNNNNNGC	2 cut(s)	54, 368
BstNSI	RCATGY	1 cut(s)	52
BstV1I	GCAGC	4 cut(s)	57, 163, 383, 387
BstV2I	GAAGAC	1 cut(s)	545
BstX2I	RGATCY	1 cut(s)	182
BstYI	RGATCY	1 cut(s)	182
BsuRI	GGCC	3 cut(s)	86, 250, 277
BtsCI	GGATG	1 cut(s)	418
BtsIMutI	CAGTG	2 cut(s)	234, 445
Cac8I	GCNNGC	2 cut(s)	50, 108
CfoI	GCGC	1 cut(s)	318
Csp6I	GTAC	2 cut(s)	345, 560
CviAII	CATG	2 cut(s)	49, 431
CviQI	GTAC	2 cut(s)	345, 560
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	5 cut(s)	128, 184, 203, 268, 353
DpnII	GATC	5 cut(s)	126, 182, 201, 266, 351
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
EciI	GGCGGA	2 cut(s)	145, 151
Eco31I	GGTCTC	1 cut(s)	335
FaeI	CATG	2 cut(s)	52, 434
FaiI	YATR	5 cut(s)	38, 50, 432, 459, 497
FatI	CATG	2 cut(s)	48, 430
FauI	CCCGC	1 cut(s)	21
Fnu4HI	GCNGC	4 cut(s)	46, 177, 372, 401
FokI	GGATG	1 cut(s)	425
Fsp4HI	GCNGC	4 cut(s)	46, 177, 372, 401
GlaI	GCGC	1 cut(s)	317
GluI	GCNGC	4 cut(s)	46, 177, 372, 401
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	86, 250, 277
HhaI	GCGC	1 cut(s)	318
Hin1II	CATG	2 cut(s)	52, 434
Hin6I	GCGC	1 cut(s)	316
HinP1I	GCGC	1 cut(s)	316
HinfI	GANTC	1 cut(s)	453
Hpy188I	TCNGA	3 cut(s)	199, 271, 569
Hpy188III	TCNNGA	1 cut(s)	124
Hpy99I	CGWCG	1 cut(s)	256
HpyAV	CCTTC	1 cut(s)	76
HpyCH4III	ACNGT	2 cut(s)	136, 440
HpyCH4IV	ACGT	3 cut(s)	152, 310, 343
HpyCH4V	TGCA	4 cut(s)	4, 132, 362, 416
HpyF10VI	GCNNNNNNNGC	2 cut(s)	54, 368
HpyF3I	CTNAG	1 cut(s)	198
HpySE526I	ACGT	3 cut(s)	152, 310, 343
Hsp92II	CATG	2 cut(s)	52, 434
HspAI	GCGC	1 cut(s)	316
Kzo9I	GATC	5 cut(s)	126, 182, 201, 266, 351
LguI	GCTCTTC	1 cut(s)	18
LmnI	GCTCC	4 cut(s)	71, 265, 570, 589
LpnPI	CCDG	8 cut(s)	165, 171, 178, 222, 353, 417, 434, 531
Lsp1109I	GCAGC	4 cut(s)	57, 163, 383, 387
LweI	GCATC	3 cut(s)	403, 504, 571
MaeII	ACGT	3 cut(s)	152, 310, 343
MalI	GATC	5 cut(s)	128, 184, 203, 268, 353
MbiI	CCGCTC	2 cut(s)	28, 195
MboI	GATC	5 cut(s)	126, 182, 201, 266, 351
MboII	GAAGA	3 cut(s)	35, 550, 559
MflI	RGATCY	1 cut(s)	182
MluCI	AATT	4 cut(s)	8, 205, 407, 522
MmeI	TCCRAC	2 cut(s)	224, 592
MnlI	CCTC	8 cut(s)	59, 62, 131, 169, 233, 240, 288, 291
MseI	TTAA	1 cut(s)	485
Mva1269I	GAATGC	1 cut(s)	391
MwoI	GCNNNNNNNGC	2 cut(s)	54, 368
NdeII	GATC	5 cut(s)	126, 182, 201, 266, 351
NlaIII	CATG	2 cut(s)	52, 434
NspI	RCATGY	1 cut(s)	52
PaeI	GCATGC	1 cut(s)	52
PciSI	GCTCTTC	1 cut(s)	18
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PctI	GAATGC	1 cut(s)	391
PfeI	GAWTC	1 cut(s)	453
PkrI	GCNGC	4 cut(s)	47, 178, 373, 402
Ple19I	CGATCG	1 cut(s)	269
Ppu21I	YACGTR	1 cut(s)	311
PsiI	TTATAA	1 cut(s)	38
PsuI	RGATCY	1 cut(s)	182
PvuI	CGATCG	1 cut(s)	269
RsaI	GTAC	2 cut(s)	346, 561
RsaNI	GTAC	2 cut(s)	345, 560
SapI	GCTCTTC	1 cut(s)	18
SaqAI	TTAA	1 cut(s)	485
SatI	GCNGC	4 cut(s)	46, 177, 372, 401
Sau3AI	GATC	5 cut(s)	126, 182, 201, 266, 351
SfaNI	GCATC	3 cut(s)	403, 504, 571
SphI	GCATGC	1 cut(s)	52
Sse9I	AATT	4 cut(s)	8, 205, 407, 522
SsiI	CCGC	5 cut(s)	28, 156, 162, 171, 193
SspI	AATATT	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	136, 440
TaiI	ACGT	3 cut(s)	155, 313, 346
TasI	AATT	4 cut(s)	8, 205, 407, 522
TatI	WGTACW	1 cut(s)	559
TfiI	GAWTC	1 cut(s)	453
Tru1I	TTAA	1 cut(s)	485
Tru9I	TTAA	1 cut(s)	485
TscAI	CASTG	2 cut(s)	241, 445
TseI	GCWGC	4 cut(s)	45, 176, 371, 400
TspDTI	ATGAA	2 cut(s)	398, 463
TspRI	CASTG	2 cut(s)	241, 445
XapI	RAATTY	1 cut(s)	522
XceI	RCATGY	1 cut(s)	52
XcmI	CCANNNNNNNNNTGG	1 cut(s)	270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.