Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0016990.1

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

1870 .. 4911

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0016990.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

atgcgaagagcggggctttataatcggcagcatgcgaagcaagtgggaggaggagcgagtgtgaaggccaagattgggaagctattgctcgccattgtcgtcctcttgatctgcaccgtttccttgctctttacgtccgcctccaccagtggcggtgctgctggatctggctatcgctctgagatcaatttggaaaaactttggagaagtgctgactctggaggttggaggccgtcatcagctccacgatcggattggcctcctccaccaagcgagactaacggctacctacgtgtgcgctgtaatggtggtctcaatcaacaacgtactgcgatctgcaatgcagttctggcagcaagaataatgaacgctacccttgtgctgccggaattggatgcaaactcattttggcatgatgacagtggttttcagggaatctatgatgttgagcatttcatcaagtcattaaggtttgatgtaaatattgtagaaaagatgcctgaaattcgcaaaaatgggaagaccaagaagataaaagctgtacagctccgaccaccaagagatgctcctatcagttggtatacttcagatgctcttcagaaaatgaaggagcatggagctatctatctaactcccttttcacatcgtttggcggaagaaattgacaacgccgggtaccaacggctgaggtgcagggttaactatcatgctctgatatttaagccaaatattatgaagttaagtcaatcaatagttgataagctccgtacacaaggtcacttcatgtctatacatcttcgttttgagatggatatgctggcatttgctgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

277

Amino Acids

30.95

Weight (kDa)

9.85

Isoelectric Point (pI)

44.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	21
Acc65I	GGTACC	1 cut(s)	675
AccB1I	GGYRCC	1 cut(s)	675
AccBSI	CCGCTC	1 cut(s)	11
AccI	GTMKAC	1 cut(s)	581
AciI	CCGC	4 cut(s)	11, 138, 153, 653
AclWI	GGATC	1 cut(s)	172
AcsI	RAATTY	1 cut(s)	504
AcuI	CTGAAG	2 cut(s)	570, 581
AfaI	GTAC	4 cut(s)	328, 543, 677, 769
AfiI	CCNNNNNNNGG	1 cut(s)	75
AflIII	ACRYGT	1 cut(s)	292
AluBI	AGCT	6 cut(s)	82, 242, 539, 547, 620, 763
AluI	AGCT	6 cut(s)	82, 242, 539, 547, 620, 763
Alw26I	GTCTC	2 cut(s)	269, 317
AlwI	GGATC	1 cut(s)	172
AoxI	GGCC	3 cut(s)	66, 230, 257
ApeKI	GCWGC	4 cut(s)	28, 158, 353, 382
ApoI	RAATTY	1 cut(s)	504
Asp718I	GGTACC	1 cut(s)	675
AspLEI	GCGC	1 cut(s)	300
AsuC2I	CCSGG	1 cut(s)	673
BanI	GGYRCC	1 cut(s)	675
BbsI	GAAGAC	1 cut(s)	527
BbvCI	CCTCAGC	1 cut(s)	686
BbvI	GCAGC	4 cut(s)	40, 145, 365, 369
BccI	CCATC	1 cut(s)	802
BceAI	ACGGC	3 cut(s)	217, 298, 698
BcnI	CCSGG	1 cut(s)	673
BcoDI	GTCTC	2 cut(s)	269, 317
BisI	GCNGC	4 cut(s)	29, 159, 354, 383
BlsI	GCNGC	4 cut(s)	30, 160, 355, 384
Bme1390I	CCNGG	1 cut(s)	673
BmiI	GGNNCC	1 cut(s)	677
BmrFI	CCNGG	1 cut(s)	673
BmsI	GCATC	4 cut(s)	385, 486, 553, 580
BpiI	GAAGAC	1 cut(s)	527
BpmI	CTGGAG	1 cut(s)	240
Bpu10I	CCTNAGC	1 cut(s)	686
BpuMI	CCSGG	1 cut(s)	673
BsaAI	YACGTR	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	317
BsaXI	ACNNNNNCTCC	2 cut(s)	45, 75
Bsc4I	CCNNNNNNNGG	1 cut(s)	75
Bse1I	ACTGG	1 cut(s)	147
Bse3DI	GCAATG	1 cut(s)	346
BseGI	GGATG	1 cut(s)	400
BseLI	CCNNNNNNNGG	1 cut(s)	75
BseMI	GCAATG	1 cut(s)	346
BseMII	CTCAG	2 cut(s)	171, 677
BseNI	ACTGG	1 cut(s)	147
BseRI	GAGGAG	3 cut(s)	63, 66, 252
BseXI	GCAGC	4 cut(s)	40, 145, 365, 369
BseYI	CCCAGC	1 cut(s)	827
BsgI	GTGCAG	2 cut(s)	97, 712
Bsh1285I	CGRYCG	1 cut(s)	251
BshFI	GGCC	3 cut(s)	68, 232, 259
BshNI	GGYRCC	1 cut(s)	675
BsiEI	CGRYCG	1 cut(s)	251
BsiSI	CCGG	2 cut(s)	386, 672
BslI	CCNNNNNNNGG	1 cut(s)	75
BsmAI	GTCTC	2 cut(s)	269, 317
BsnI	GGCC	3 cut(s)	68, 232, 259
Bso31I	GGTCTC	1 cut(s)	317
Bsp1407I	TGTACA	1 cut(s)	541
Bsp143I	GATC	5 cut(s)	108, 164, 183, 248, 333
BspACI	CCGC	4 cut(s)	11, 138, 153, 653
BspANI	GGCC	3 cut(s)	68, 232, 259
BspCNI	CTCAG	2 cut(s)	172, 678
BspLI	GGNNCC	1 cut(s)	677
BspPI	GGATC	1 cut(s)	172
BspQI	GCTCTTC	1 cut(s)	600
BspT107I	GGYRCC	1 cut(s)	675
BspTNI	GGTCTC	1 cut(s)	317
BsrBI	CCGCTC	1 cut(s)	11
BsrDI	GCAATG	1 cut(s)	346
BsrGI	TGTACA	1 cut(s)	541
BsrI	ACTGG	1 cut(s)	147
BssMI	GATC	5 cut(s)	108, 164, 183, 248, 333
BssNAI	GTATAC	1 cut(s)	582
Bst1107I	GTATAC	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	118, 422
Bst6I	CTCTTC	1 cut(s)	600
BstAUI	TGTACA	1 cut(s)	541
BstBAI	YACGTR	1 cut(s)	293
BstC8I	GCNNGC	3 cut(s)	33, 90, 819
BstDEI	CTNAG	2 cut(s)	180, 686
BstF5I	GGATG	1 cut(s)	400
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	5 cut(s)	111, 167, 186, 251, 336
BstMAI	GTCTC	2 cut(s)	269, 317
BstMBI	GATC	5 cut(s)	108, 164, 183, 248, 333
BstMCI	CGRYCG	1 cut(s)	251
BstMWI	GCNNNNNNNGC	2 cut(s)	37, 350
BstNSI	RCATGY	1 cut(s)	35
BstSCI	CCNGG	1 cut(s)	671
BstV1I	GCAGC	4 cut(s)	40, 145, 365, 369
BstV2I	GAAGAC	1 cut(s)	527
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BstZ17I	GTATAC	1 cut(s)	582
BsuRI	GGCC	3 cut(s)	68, 232, 259
BtsCI	GGATG	1 cut(s)	400
BtsIMutI	CAGTG	2 cut(s)	154, 427
Cac8I	GCNNGC	3 cut(s)	33, 90, 819
CfoI	GCGC	1 cut(s)	300
Csp6I	GTAC	4 cut(s)	327, 542, 676, 768
CviAII	CATG	5 cut(s)	32, 413, 614, 707, 784
CviQI	GTAC	4 cut(s)	327, 542, 676, 768
DdeI	CTNAG	2 cut(s)	180, 686
DpnI	GATC	5 cut(s)	110, 166, 185, 250, 335
DpnII	GATC	5 cut(s)	108, 164, 183, 248, 333
Eam1104I	CTCTTC	1 cut(s)	600
EarI	CTCTTC	1 cut(s)	600
EciI	GGCGGA	2 cut(s)	127, 668
Eco31I	GGTCTC	1 cut(s)	317
Eco57I	CTGAAG	2 cut(s)	570, 581
FaeI	CATG	5 cut(s)	35, 416, 617, 710, 787
FatI	CATG	5 cut(s)	31, 412, 613, 706, 783
FauI	CCCGC	1 cut(s)	4
FblI	GTMKAC	1 cut(s)	581
Fnu4HI	GCNGC	4 cut(s)	29, 159, 354, 383
FokI	GGATG	1 cut(s)	407
Fsp4HI	GCNGC	4 cut(s)	29, 159, 354, 383
GlaI	GCGC	1 cut(s)	299
GluI	GCNGC	4 cut(s)	29, 159, 354, 383
GsaI	CCCAGC	1 cut(s)	831
GsuI	CTGGAG	1 cut(s)	240
HaeIII	GGCC	3 cut(s)	68, 232, 259
HapII	CCGG	2 cut(s)	386, 672
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	5 cut(s)	35, 416, 617, 710, 787
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	2 cut(s)	215, 435
HpaI	GTTAAC	1 cut(s)	700
HpaII	CCGG	2 cut(s)	386, 672
Hpy166II	GTNNAC	3 cut(s)	582, 700, 770
Hpy188I	TCNGA	6 cut(s)	181, 253, 551, 589, 600, 714
Hpy188III	TCNNGA	2 cut(s)	106, 219
Hpy8I	GTNNAC	3 cut(s)	582, 700, 770
HpyAV	CCTTC	2 cut(s)	58, 601
HpyCH4III	ACNGT	2 cut(s)	118, 422
HpyCH4IV	ACGT	3 cut(s)	134, 292, 325
HpyCH4V	TGCA	5 cut(s)	114, 339, 344, 398, 693
HpyF10VI	GCNNNNNNNGC	2 cut(s)	37, 350
HpyF3I	CTNAG	2 cut(s)	180, 686
HpySE526I	ACGT	3 cut(s)	134, 292, 325
Hsp92II	CATG	5 cut(s)	35, 416, 617, 710, 787
HspAI	GCGC	1 cut(s)	298
KpnI	GGTACC	1 cut(s)	679
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	5 cut(s)	108, 164, 183, 248, 333
LguI	GCTCTTC	1 cut(s)	600
LmnI	GCTCC	7 cut(s)	53, 247, 552, 571, 610, 617, 768
Lsp1109I	GCAGC	4 cut(s)	40, 145, 365, 369
LweI	GCATC	4 cut(s)	385, 486, 553, 580
MaeII	ACGT	3 cut(s)	134, 292, 325
MaeIII	GTNAC	1 cut(s)	776
MalI	GATC	5 cut(s)	110, 166, 185, 250, 335
MbiI	CCGCTC	1 cut(s)	11
MboI	GATC	5 cut(s)	108, 164, 183, 248, 333
MboII	GAAGA	6 cut(s)	18, 532, 541, 587, 668, 788
MflI	RGATCY	1 cut(s)	164
MluCI	AATT	4 cut(s)	187, 389, 504, 660
MlyI	GAGTC	1 cut(s)	209
MmeI	TCCRAC	2 cut(s)	206, 574
MnlI	CCTC	9 cut(s)	41, 44, 113, 151, 215, 222, 270, 273, 681
MseI	TTAA	4 cut(s)	467, 699, 720, 740
MspI	CCGG	2 cut(s)	386, 672
MspR9I	CCNGG	1 cut(s)	673
MwoI	GCNNNNNNNGC	2 cut(s)	37, 350
NciI	CCSGG	1 cut(s)	673
NdeII	GATC	5 cut(s)	108, 164, 183, 248, 333
NlaIII	CATG	5 cut(s)	35, 416, 617, 710, 787
NlaIV	GGNNCC	1 cut(s)	677
NmuCI	GTSAC	1 cut(s)	776
NspI	RCATGY	1 cut(s)	35
PaeI	GCATGC	1 cut(s)	35
PciSI	GCTCTTC	1 cut(s)	600
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	1 cut(s)	435
PkrI	GCNGC	4 cut(s)	30, 160, 355, 384
Ple19I	CGATCG	1 cut(s)	251
PleI	GAGTC	1 cut(s)	209
PpsI	GAGTC	1 cut(s)	209
Ppu21I	YACGTR	1 cut(s)	293
PsiI	TTATAA	1 cut(s)	21
PspFI	CCCAGC	1 cut(s)	827
PspN4I	GGNNCC	1 cut(s)	677
PsuI	RGATCY	1 cut(s)	164
PvuI	CGATCG	1 cut(s)	251
RsaI	GTAC	4 cut(s)	328, 543, 677, 769
RsaNI	GTAC	4 cut(s)	327, 542, 676, 768
SapI	GCTCTTC	1 cut(s)	600
SaqAI	TTAA	4 cut(s)	467, 699, 720, 740
SatI	GCNGC	4 cut(s)	29, 159, 354, 383
Sau3AI	GATC	5 cut(s)	108, 164, 183, 248, 333
SchI	GAGTC	1 cut(s)	209
ScrFI	CCNGG	1 cut(s)	673
SfaNI	GCATC	4 cut(s)	385, 486, 553, 580
SphI	GCATGC	1 cut(s)	35
Sse9I	AATT	4 cut(s)	187, 389, 504, 660
SsiI	CCGC	4 cut(s)	11, 138, 153, 653
SspI	AATATT	2 cut(s)	484, 730
StyD4I	CCNGG	1 cut(s)	671
TaaI	ACNGT	2 cut(s)	118, 422
TaiI	ACGT	3 cut(s)	137, 295, 328
TasI	AATT	4 cut(s)	187, 389, 504, 660
TatI	WGTACW	1 cut(s)	541
TfiI	GAWTC	1 cut(s)	435
Tru1I	TTAA	4 cut(s)	467, 699, 720, 740
Tru9I	TTAA	4 cut(s)	467, 699, 720, 740
TscAI	CASTG	2 cut(s)	154, 427
TseFI	GTSAC	1 cut(s)	776
TseI	GCWGC	4 cut(s)	28, 158, 353, 382
Tsp45I	GTSAC	1 cut(s)	776
TspDTI	ATGAA	5 cut(s)	380, 445, 620, 749, 772
TspGWI	ACGGA	1 cut(s)	755
TspRI	CASTG	2 cut(s)	154, 427
XapI	RAATTY	1 cut(s)	504
XceI	RCATGY	1 cut(s)	35
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252
XmiI	GTMKAC	1 cut(s)	581

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.