Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

25375913 .. 25378643

Gene Structure 2731 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013052

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1104 bp

ATGCAAACTCATTTTGGCATGATGACAGTGGTTTTCAGGGAATCTATGATGTTGAGCATTTCATCAAAGACCAAGAAGATAAAAGCTGTACAGCTCCGACCACCAAGAGATGCTCCTATCAGTTGGTATACTACAGATGCTCTTCAGAAAATGAAGGAGCATGGGGCTATCTATCTAACTCCCTTTTCACATCGTTTGGCGGAAGAAATTGACAACGCCGAGTACCAACGGCTGAGGTGCAGGGTTAACTATCATGCTCTGATATTTAAGCCAAATATTATGAAGTTAAGTCAATCAATAGTTGCTAAGCTCCGTACACAAGGTCACTTCATGTCTATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGGGTGCTTTGATATCTTTAACCCAAAAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTACAAGGAAAGAAGAGCAGTCGGAAAATGCCCATTAACTCCAGAAGAGGTCGGTCTTATTTTACGCGCAATGGAATTTAACAATTCTACCAGGATATACCTAGCTGCTGGTGAACTATTTGGTGGGGAGAGATTCATGAAACCATTCTGTGCTTTGTTCCCTCACCTTGAGAACCACAATTCTGTGGAGCACTCAGATGAGCTACCAGAGAACACCCAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTCTCTGATATTTTTATGCCTACATATGATGGACCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTCCAATCTTCATTGATAAAGGACGAAAATCAGGTTTTGAAGAAGCTGTTAGGCAAGTGATGCTAAAAACAAACCTTGGTGGCCCTCACAAGCGGATCCCACCTGAGTCTTTCTATACAAATTCTTGGCCAGAATGCTTCTGCCAAACATCTCCAAAGAATCCGGCAGAAAAATGTCCACCAGATAATGTTTTGGAAATTCTGAACAGCCAGTTAAGTCAAGAGAACGATGATCCGGAATCAAATTTAACATCTGTTAGAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

368

Amino Acids

42.21

Weight (kDa)

8.78

Isoelectric Point (pI)

41.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	10 - 265	1.9e-58	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	128
AccII	CGCG	1 cut(s)	525
AccIII	TCCGGA	2 cut(s)	801, 1069
AciI	CCGC	3 cut(s)	200, 784, 928
AclWI	GGATC	3 cut(s)	925, 938, 1061
AcoI	YGGCCR	1 cut(s)	962
AcsI	RAATTY	5 cut(s)	436, 533, 955, 1032, 1078
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	3 cut(s)	90, 224, 316
AgsI	TTSAA	2 cut(s)	418, 875
AjnI	CCWGG	2 cut(s)	548, 675
AluBI	AGCT	7 cut(s)	86, 94, 310, 454, 563, 661, 881
AluI	AGCT	7 cut(s)	86, 94, 310, 454, 563, 661, 881
Alw21I	GWGCWC	1 cut(s)	651
Alw26I	GTCTC	1 cut(s)	719
AlwI	GGATC	3 cut(s)	925, 938, 1061
Aor13HI	TCCGGA	2 cut(s)	801, 1069
AoxI	GGCC	2 cut(s)	916, 962
ApeKI	GCWGC	1 cut(s)	563
ApoI	RAATTY	5 cut(s)	436, 533, 955, 1032, 1078
AseI	ATTAAT	1 cut(s)	683
Asp700I	GAANNNNTTC	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	527
AspS9I	GGNCC	3 cut(s)	749, 804, 917
AsuHPI	GGTGA	2 cut(s)	581, 614
AvaII	GGWCC	2 cut(s)	749, 804
BalI	TGGCCA	1 cut(s)	964
BamHI	GGATCC	1 cut(s)	930
BarI	GAAGNNNNNNTAC	2 cut(s)	443, 475
Bbv12I	GWGCWC	1 cut(s)	651
BbvCI	CCTCAGC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	550
BccI	CCATC	2 cut(s)	349, 740
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	2 cut(s)	550, 677
BcoDI	GTCTC	1 cut(s)	719
BfaI	CTAG	2 cut(s)	560, 753
BfmI	CTRYAG	2 cut(s)	132, 693
BisI	GCNGC	1 cut(s)	564
BlpI	GCTNAGC	1 cut(s)	306
BlsI	GCNGC	1 cut(s)	565
Bme1390I	CCNGG	2 cut(s)	550, 677
Bme18I	GGWCC	2 cut(s)	749, 804
BmgT120I	GGNCC	3 cut(s)	749, 804, 917
BmiI	GGNNCC	1 cut(s)	932
BmrFI	CCNGG	2 cut(s)	550, 677
BmsI	GCATC	3 cut(s)	100, 127, 885
BpmI	CTGGAG	1 cut(s)	483
Bpu10I	CCTNAGC	1 cut(s)	233
Bpu1102I	GCTNAGC	1 cut(s)	306
BpuEI	CTTGAG	1 cut(s)	647
BsaJI	CCNNGG	4 cut(s)	675, 676, 775, 910
BsaWI	WCCGGW	2 cut(s)	801, 1069
Bse1I	ACTGG	1 cut(s)	1045
Bse3DI	GCAATG	1 cut(s)	534
BseAI	TCCGGA	2 cut(s)	801, 1069
BseBI	CCWGG	2 cut(s)	550, 677
BseDI	CCNNGG	4 cut(s)	675, 676, 775, 910
BseMI	GCAATG	1 cut(s)	534
BseMII	CTCAG	3 cut(s)	224, 666, 930
BseNI	ACTGG	1 cut(s)	1045
BseRI	GAGGAG	1 cut(s)	707
BseXI	GCAGC	1 cut(s)	550
BseYI	CCCAGC	1 cut(s)	374
BsgI	GTGCAG	1 cut(s)	259
Bsh1236I	CGCG	1 cut(s)	525
BshFI	GGCC	2 cut(s)	918, 964
BsiHKAI	GWGCWC	1 cut(s)	651
BsiSI	CCGG	3 cut(s)	802, 998, 1070
BsmAI	GTCTC	1 cut(s)	719
BsmI	GAATGC	1 cut(s)	974
BsnI	GGCC	2 cut(s)	918, 964
Bsp1286I	GDGCHC	1 cut(s)	651
Bsp13I	TCCGGA	2 cut(s)	801, 1069
Bsp1407I	TGTACA	1 cut(s)	88
Bsp143I	GATC	2 cut(s)	930, 1066
Bsp1720I	GCTNAGC	1 cut(s)	306
BspACI	CCGC	3 cut(s)	200, 784, 928
BspANI	GGCC	2 cut(s)	918, 964
BspCNI	CTCAG	3 cut(s)	225, 665, 931
BspEI	TCCGGA	2 cut(s)	801, 1069
BspFNI	CGCG	1 cut(s)	525
BspHI	TCATGA	1 cut(s)	594
BspLI	GGNNCC	1 cut(s)	932
BspMAI	CTGCAG	1 cut(s)	697
BspPI	GGATC	3 cut(s)	925, 938, 1061
BspQI	GCTCTTC	2 cut(s)	147, 466
BsrDI	GCAATG	1 cut(s)	534
BsrGI	TGTACA	1 cut(s)	88
BsrI	ACTGG	1 cut(s)	1045
BssECI	CCNNGG	4 cut(s)	675, 676, 775, 910
BssMI	GATC	2 cut(s)	930, 1066
BssNAI	GTATAC	1 cut(s)	129
BssT1I	CCWWGG	2 cut(s)	775, 910
Bst1107I	GTATAC	1 cut(s)	129
Bst2UI	CCWGG	2 cut(s)	550, 677
Bst4CI	ACNGT	1 cut(s)	28
Bst6I	CTCTTC	3 cut(s)	147, 466, 498
BstAPI	GCANNNNNTGC	1 cut(s)	895
BstAUI	TGTACA	1 cut(s)	88
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	4 cut(s)	233, 306, 652, 939
BstFNI	CGCG	1 cut(s)	525
BstHHI	GCGC	1 cut(s)	527
BstKTI	GATC	2 cut(s)	933, 1069
BstMAI	GTCTC	1 cut(s)	719
BstMBI	GATC	2 cut(s)	930, 1066
BstMWI	GCNNNNNNNGC	1 cut(s)	895
BstNI	CCWGG	2 cut(s)	550, 677
BstSCI	CCNGG	2 cut(s)	548, 675
BstSFI	CTRYAG	2 cut(s)	132, 693
BstUI	CGCG	1 cut(s)	525
BstV1I	GCAGC	1 cut(s)	550
BstX2I	RGATCY	1 cut(s)	930
BstYI	RGATCY	1 cut(s)	930
BstZ17I	GTATAC	1 cut(s)	129
BsuRI	GGCC	2 cut(s)	918, 964
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	2 cut(s)	33, 702
Cac8I	GCNNGC	1 cut(s)	366
CciI	TCATGA	1 cut(s)	594
CfoI	GCGC	1 cut(s)	527
Cfr13I	GGNCC	3 cut(s)	749, 804, 917
Csp6I	GTAC	3 cut(s)	89, 223, 315
CviAII	CATG	6 cut(s)	19, 161, 254, 331, 595, 706
CviQI	GTAC	3 cut(s)	89, 223, 315
DdeI	CTNAG	4 cut(s)	233, 306, 652, 939
DpnI	GATC	2 cut(s)	932, 1068
DpnII	GATC	2 cut(s)	930, 1066
EaeI	YGGCCR	1 cut(s)	962
Eam1104I	CTCTTC	3 cut(s)	147, 466, 498
EarI	CTCTTC	3 cut(s)	147, 466, 498
EciI	GGCGGA	1 cut(s)	215
Eco130I	CCWWGG	2 cut(s)	775, 910
Eco32I	GATATC	1 cut(s)	388
Eco47I	GGWCC	2 cut(s)	749, 804
Eco57I	CTGAAG	1 cut(s)	128
EcoRII	CCWGG	2 cut(s)	548, 675
EcoRV	GATATC	1 cut(s)	388
EcoT14I	CCWWGG	2 cut(s)	775, 910
ErhI	CCWWGG	2 cut(s)	775, 910
FaeI	CATG	6 cut(s)	22, 164, 257, 334, 598, 709
FatI	CATG	6 cut(s)	18, 160, 253, 330, 594, 705
FauNDI	CATATG	1 cut(s)	742
FblI	GTMKAC	1 cut(s)	128
Fnu4HI	GCNGC	1 cut(s)	564
Fsp4HI	GCNGC	1 cut(s)	564
FspBI	CTAG	2 cut(s)	560, 753
GlaI	GCGC	1 cut(s)	526
GluI	GCNGC	1 cut(s)	564
GsaI	CCCAGC	1 cut(s)	378
GsuI	CTGGAG	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	918, 964
HapII	CCGG	3 cut(s)	802, 998, 1070
HhaI	GCGC	1 cut(s)	527
Hin1II	CATG	6 cut(s)	22, 164, 257, 334, 598, 709
Hin6I	GCGC	1 cut(s)	525
HinP1I	GCGC	1 cut(s)	525
HincII	GTYRAC	1 cut(s)	247
HindII	GTYRAC	1 cut(s)	247
HindIII	AAGCTT	1 cut(s)	452
HinfI	GANTC	5 cut(s)	41, 591, 941, 994, 1073
HpaI	GTTAAC	1 cut(s)	247
HpaII	CCGG	3 cut(s)	802, 998, 1070
HphI	GGTGA	2 cut(s)	581, 614
Hpy166II	GTNNAC	6 cut(s)	129, 247, 317, 460, 572, 1013
Hpy188I	TCNGA	7 cut(s)	98, 147, 261, 482, 655, 724, 1038
Hpy188III	TCNNGA	5 cut(s)	500, 595, 802, 1055, 1070
Hpy8I	GTNNAC	6 cut(s)	129, 247, 317, 460, 572, 1013
HpyAV	CCTTC	1 cut(s)	148
HpyCH4III	ACNGT	1 cut(s)	28
HpyCH4V	TGCA	4 cut(s)	4, 240, 443, 695
HpyF10VI	GCNNNNNNNGC	1 cut(s)	895
HpyF3I	CTNAG	4 cut(s)	233, 306, 652, 939
Hsp92II	CATG	6 cut(s)	22, 164, 257, 334, 598, 709
HspAI	GCGC	1 cut(s)	525
Kpn2I	TCCGGA	2 cut(s)	801, 1069
KspAI	GTTAAC	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	930, 1066
LguI	GCTCTTC	2 cut(s)	147, 466
LmnI	GCTCC	6 cut(s)	99, 118, 157, 315, 646, 841
Lsp1109I	GCAGC	1 cut(s)	550
LweI	GCATC	3 cut(s)	100, 127, 885
MaeI	CTAG	2 cut(s)	560, 753
MaeIII	GTNAC	1 cut(s)	323
MalI	GATC	2 cut(s)	932, 1068
MboI	GATC	2 cut(s)	930, 1066
MboII	GAAGA	9 cut(s)	88, 134, 215, 335, 430, 483, 515, 835, 887
MflI	RGATCY	1 cut(s)	930
MhlI	GDGCHC	1 cut(s)	651
MlsI	TGGCCA	1 cut(s)	964
MluCI	AATT	9 cut(s)	207, 436, 533, 541, 637, 810, 955, 1032, 1078
MluNI	TGGCCA	1 cut(s)	964
MlyI	GAGTC	1 cut(s)	950
MmeI	TCCRAC	2 cut(s)	121, 460
MnlI	CCTC	6 cut(s)	228, 499, 630, 728, 797, 930
Mox20I	TGGCCA	1 cut(s)	964
MroI	TCCGGA	2 cut(s)	801, 1069
MroXI	GAANNNNTTC	1 cut(s)	602
MscI	TGGCCA	1 cut(s)	964
MseI	TTAA	9 cut(s)	246, 267, 287, 393, 494, 537, 683, 1049, 1082
MslI	CAYNNNNRTG	1 cut(s)	654
Msp20I	TGGCCA	1 cut(s)	964
MspI	CCGG	3 cut(s)	802, 998, 1070
MspR9I	CCNGG	2 cut(s)	550, 677
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	550, 677
MvnI	CGCG	1 cut(s)	525
MwoI	GCNNNNNNNGC	1 cut(s)	895
NdeI	CATATG	1 cut(s)	742
NdeII	GATC	2 cut(s)	930, 1066
NlaIII	CATG	6 cut(s)	22, 164, 257, 334, 598, 709
NlaIV	GGNNCC	1 cut(s)	932
NmeAIII	GCCGAG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	323
PagI	TCATGA	1 cut(s)	594
PasI	CCCWGGG	1 cut(s)	676
PciSI	GCTCTTC	2 cut(s)	147, 466
PctI	GAATGC	1 cut(s)	974
PdmI	GAANNNNTTC	1 cut(s)	602
PfeI	GAWTC	4 cut(s)	41, 591, 994, 1073
PkrI	GCNGC	1 cut(s)	565
PleI	GAGTC	1 cut(s)	949
PpsI	GAGTC	1 cut(s)	949
PshBI	ATTAAT	1 cut(s)	683
Psp6I	CCWGG	2 cut(s)	548, 675
PspFI	CCCAGC	1 cut(s)	374
PspGI	CCWGG	2 cut(s)	548, 675
PspN4I	GGNNCC	1 cut(s)	932
PspPI	GGNCC	3 cut(s)	749, 804, 917
PstI	CTGCAG	1 cut(s)	697
PsuI	RGATCY	1 cut(s)	930
RsaI	GTAC	3 cut(s)	90, 224, 316
RsaNI	GTAC	3 cut(s)	89, 223, 315
RseI	CAYNNNNRTG	1 cut(s)	654
SapI	GCTCTTC	2 cut(s)	147, 466
SaqAI	TTAA	9 cut(s)	246, 267, 287, 393, 494, 537, 683, 1049, 1082
SatI	GCNGC	1 cut(s)	564
Sau3AI	GATC	2 cut(s)	930, 1066
Sau96I	GGNCC	3 cut(s)	749, 804, 917
SchI	GAGTC	1 cut(s)	950
ScrFI	CCNGG	2 cut(s)	550, 677
SduI	GDGCHC	1 cut(s)	651
SfaNI	GCATC	3 cut(s)	100, 127, 885
SfcI	CTRYAG	2 cut(s)	132, 693
SinI	GGWCC	2 cut(s)	749, 804
SmiMI	CAYNNNNRTG	1 cut(s)	654
SmlI	CTYRAG	1 cut(s)	626
SmoI	CTYRAG	1 cut(s)	626
Sse9I	AATT	9 cut(s)	207, 436, 533, 541, 637, 810, 955, 1032, 1078
SsiI	CCGC	3 cut(s)	200, 784, 928
SspI	AATATT	1 cut(s)	277
SspMI	CTAG	2 cut(s)	560, 753
StyD4I	CCNGG	2 cut(s)	548, 675
StyI	CCWWGG	2 cut(s)	775, 910
TaaI	ACNGT	1 cut(s)	28
TaqI	TCGA	1 cut(s)	427
TaqII	GACCGA	1 cut(s)	500
TasI	AATT	9 cut(s)	207, 436, 533, 541, 637, 810, 955, 1032, 1078
TatI	WGTACW	1 cut(s)	88
TfiI	GAWTC	4 cut(s)	41, 591, 994, 1073
Tru1I	TTAA	9 cut(s)	246, 267, 287, 393, 494, 537, 683, 1049, 1082
Tru9I	TTAA	9 cut(s)	246, 267, 287, 393, 494, 537, 683, 1049, 1082
TscAI	CASTG	2 cut(s)	33, 702
TseFI	GTSAC	1 cut(s)	323
TseI	GCWGC	1 cut(s)	563
Tsp45I	GTSAC	1 cut(s)	323
TspDTI	ATGAA	8 cut(s)	51, 167, 296, 319, 447, 583, 611, 835
TspGWI	ACGGA	1 cut(s)	302
TspRI	CASTG	2 cut(s)	33, 702
VpaK11BI	GGWCC	2 cut(s)	749, 804
VspI	ATTAAT	1 cut(s)	683
XapI	RAATTY	5 cut(s)	436, 533, 955, 1032, 1078
XmiI	GTMKAC	1 cut(s)	128
XmnI	GAANNNNTTC	1 cut(s)	602
XspI	CTAG	2 cut(s)	560, 753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.