Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

46243618 .. 46249279

Gene Structure 5662 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG185800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGCCCGAAATTCACAAAAATGGGAAATCCAAGAAGATAAAAGCTGTACAGCTCCGACCACCAAGAGATGCTCCTATCAGTTGGTATACTACAGATGCTCTTCAGAAAATGAAGGAGCATGGGGCTATCTATCTAACTCCCTTTTCACATCGTTTGGCGGAAGAAATTGACAACGCCGAGTACCAACGGCTGAGGTGCAGGGTTAACTATCATGCTCTGATATTTAAGCCAAATATTATGAAGTTAAGTCAATCAATAGTTGATAAGCTCCGTACACAAGGTCACTTCATGTCTATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGGGTGCTTTGATATCTTTAACCCAAAAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTATAAGGAAAGAAGAGCAATCGGAAAATGCCCATTAACTCCAGAAGAGGTCGGTCTTATTTTACGCGCAATGGAATTTAACAATTCTACCAGGATATACCTAGCTGCTGGTGAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACAGTTCTGTGGAGCACTCAGATGAGCTACCAGAGAACACCCAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTTTCTGATATTTTTATGCCTACATATGATGGACCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTCCAATCTTCATTGATCGTGAAAAAGGACGAAAATCAGGTTTCGAAGAAGCTGTTAGGCAAGTGATGCTAAAAACAAACCTTGGCGGCCCTCACAAGCGGATCTCACCTGAGTCTTTCTATACAAATTCTTGGCCAGAATGCTTCTGCCAAACATCTCCAAAGAATCTGGCAGATAAATGTCCACCAGATAATGTTTTGGAAATTCTGAACAGCCAGTTAAGTCAAGAGAACGATGATCCGGAATCAAATTCAACATCTGTTAGAGAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

355

Amino Acids

40.91

Weight (kDa)

8.81

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	9 - 251	2.7e-59	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	420
AccI	GTMKAC	1 cut(s)	86
AccII	CGCG	1 cut(s)	483
AccIII	TCCGGA	2 cut(s)	759, 1033
AciI	CCGC	4 cut(s)	158, 742, 879, 892
AclWI	GGATC	2 cut(s)	902, 1025
AcoI	YGGCCR	1 cut(s)	926
AcsI	RAATTY	6 cut(s)	9, 394, 491, 919, 996, 1042
AcuI	CTGAAG	1 cut(s)	86
AfaI	GTAC	3 cut(s)	48, 182, 274
AgsI	TTSAA	2 cut(s)	376, 1047
AjnI	CCWGG	2 cut(s)	506, 633
AluBI	AGCT	7 cut(s)	44, 52, 268, 412, 521, 619, 845
AluI	AGCT	7 cut(s)	44, 52, 268, 412, 521, 619, 845
Alw21I	GWGCWC	1 cut(s)	609
Alw26I	GTCTC	1 cut(s)	677
AlwI	GGATC	2 cut(s)	902, 1025
Aor13HI	TCCGGA	2 cut(s)	759, 1033
AoxI	GGCC	2 cut(s)	880, 926
ApeKI	GCWGC	1 cut(s)	521
ApoI	RAATTY	6 cut(s)	9, 394, 491, 919, 996, 1042
AseI	ATTAAT	1 cut(s)	641
Asp700I	GAANNNNTTC	1 cut(s)	560
AspLEI	GCGC	1 cut(s)	485
AspS9I	GGNCC	3 cut(s)	707, 762, 881
AsuHPI	GGTGA	3 cut(s)	539, 572, 891
AsuII	TTCGAA	1 cut(s)	837
AvaII	GGWCC	2 cut(s)	707, 762
BalI	TGGCCA	1 cut(s)	928
Bbv12I	GWGCWC	1 cut(s)	609
BbvCI	CCTCAGC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	508
BccI	CCATC	2 cut(s)	307, 698
BceAI	ACGGC	1 cut(s)	203
BciT130I	CCWGG	2 cut(s)	508, 635
BcoDI	GTCTC	1 cut(s)	677
BfaI	CTAG	2 cut(s)	518, 711
BfmI	CTRYAG	2 cut(s)	90, 651
BisI	GCNGC	2 cut(s)	522, 880
BlsI	GCNGC	2 cut(s)	523, 881
Bme1390I	CCNGG	2 cut(s)	508, 635
Bme18I	GGWCC	2 cut(s)	707, 762
BmgT120I	GGNCC	3 cut(s)	707, 762, 881
BmrFI	CCNGG	2 cut(s)	508, 635
BmsI	GCATC	3 cut(s)	58, 85, 849
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	191
Bpu14I	TTCGAA	1 cut(s)	837
BpuEI	CTTGAG	1 cut(s)	605
BsaJI	CCNNGG	4 cut(s)	633, 634, 733, 874
BsaWI	WCCGGW	2 cut(s)	759, 1033
Bse1I	ACTGG	1 cut(s)	1009
Bse3DI	GCAATG	1 cut(s)	492
BseAI	TCCGGA	2 cut(s)	759, 1033
BseBI	CCWGG	2 cut(s)	508, 635
BseDI	CCNNGG	4 cut(s)	633, 634, 733, 874
BseMI	GCAATG	1 cut(s)	492
BseMII	CTCAG	3 cut(s)	182, 624, 894
BseNI	ACTGG	1 cut(s)	1009
BseXI	GCAGC	1 cut(s)	508
BseYI	CCCAGC	1 cut(s)	332
BsgI	GTGCAG	1 cut(s)	217
Bsh1236I	CGCG	1 cut(s)	483
BshFI	GGCC	2 cut(s)	882, 928
BsiHKAI	GWGCWC	1 cut(s)	609
BsiSI	CCGG	2 cut(s)	760, 1034
BsmAI	GTCTC	1 cut(s)	677
BsmI	GAATGC	1 cut(s)	938
BsnI	GGCC	2 cut(s)	882, 928
Bsp119I	TTCGAA	1 cut(s)	837
Bsp1286I	GDGCHC	1 cut(s)	609
Bsp13I	TCCGGA	2 cut(s)	759, 1033
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	808, 894, 1030
BspACI	CCGC	4 cut(s)	158, 742, 879, 892
BspANI	GGCC	2 cut(s)	882, 928
BspCNI	CTCAG	3 cut(s)	183, 623, 895
BspEI	TCCGGA	2 cut(s)	759, 1033
BspFNI	CGCG	1 cut(s)	483
BspHI	TCATGA	1 cut(s)	552
BspMAI	CTGCAG	1 cut(s)	655
BspPI	GGATC	2 cut(s)	902, 1025
BspQI	GCTCTTC	2 cut(s)	105, 424
BspT104I	TTCGAA	1 cut(s)	837
BsrDI	GCAATG	1 cut(s)	492
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	1 cut(s)	1009
BssECI	CCNNGG	4 cut(s)	633, 634, 733, 874
BssMI	GATC	3 cut(s)	808, 894, 1030
BssNAI	GTATAC	1 cut(s)	87
BssT1I	CCWWGG	2 cut(s)	733, 874
Bst1107I	GTATAC	1 cut(s)	87
Bst2UI	CCWGG	2 cut(s)	508, 635
Bst4CI	ACNGT	1 cut(s)	596
Bst6I	CTCTTC	3 cut(s)	105, 424, 456
BstAPI	GCANNNNNTGC	1 cut(s)	859
BstAUI	TGTACA	1 cut(s)	46
BstBI	TTCGAA	1 cut(s)	837
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	3 cut(s)	191, 610, 903
BstFNI	CGCG	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	485
BstKTI	GATC	3 cut(s)	811, 897, 1033
BstMAI	GTCTC	1 cut(s)	677
BstMBI	GATC	3 cut(s)	808, 894, 1030
BstMWI	GCNNNNNNNGC	1 cut(s)	859
BstNI	CCWGG	2 cut(s)	508, 635
BstSCI	CCNGG	2 cut(s)	506, 633
BstSFI	CTRYAG	2 cut(s)	90, 651
BstUI	CGCG	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	508
BstX2I	RGATCY	1 cut(s)	894
BstYI	RGATCY	1 cut(s)	894
BstZ17I	GTATAC	1 cut(s)	87
BsuRI	GGCC	2 cut(s)	882, 928
BtsI	GCAGTG	1 cut(s)	660
BtsIMutI	CAGTG	1 cut(s)	660
Cac8I	GCNNGC	1 cut(s)	324
CciI	TCATGA	1 cut(s)	552
CfoI	GCGC	1 cut(s)	485
Cfr13I	GGNCC	3 cut(s)	707, 762, 881
Csp6I	GTAC	3 cut(s)	47, 181, 273
CviAII	CATG	5 cut(s)	119, 212, 289, 553, 664
CviQI	GTAC	3 cut(s)	47, 181, 273
DdeI	CTNAG	3 cut(s)	191, 610, 903
DpnI	GATC	3 cut(s)	810, 896, 1032
DpnII	GATC	3 cut(s)	808, 894, 1030
EaeI	YGGCCR	1 cut(s)	926
Eam1104I	CTCTTC	3 cut(s)	105, 424, 456
EarI	CTCTTC	3 cut(s)	105, 424, 456
EciI	GGCGGA	1 cut(s)	173
Eco130I	CCWWGG	2 cut(s)	733, 874
Eco32I	GATATC	1 cut(s)	346
Eco47I	GGWCC	2 cut(s)	707, 762
Eco57I	CTGAAG	1 cut(s)	86
EcoRII	CCWGG	2 cut(s)	506, 633
EcoRV	GATATC	1 cut(s)	346
EcoT14I	CCWWGG	2 cut(s)	733, 874
ErhI	CCWWGG	2 cut(s)	733, 874
FaeI	CATG	5 cut(s)	122, 215, 292, 556, 667
FatI	CATG	5 cut(s)	118, 211, 288, 552, 663
FauNDI	CATATG	1 cut(s)	700
FblI	GTMKAC	1 cut(s)	86
Fnu4HI	GCNGC	2 cut(s)	522, 880
Fsp4HI	GCNGC	2 cut(s)	522, 880
FspBI	CTAG	2 cut(s)	518, 711
GlaI	GCGC	1 cut(s)	484
GluI	GCNGC	2 cut(s)	522, 880
GsaI	CCCAGC	1 cut(s)	336
GsuI	CTGGAG	1 cut(s)	441
HaeIII	GGCC	2 cut(s)	882, 928
HapII	CCGG	2 cut(s)	760, 1034
HhaI	GCGC	1 cut(s)	485
Hin1II	CATG	5 cut(s)	122, 215, 292, 556, 667
Hin6I	GCGC	1 cut(s)	483
HinP1I	GCGC	1 cut(s)	483
HincII	GTYRAC	1 cut(s)	205
HindII	GTYRAC	1 cut(s)	205
HindIII	AAGCTT	1 cut(s)	410
HinfI	GANTC	4 cut(s)	549, 905, 958, 1037
HpaI	GTTAAC	1 cut(s)	205
HpaII	CCGG	2 cut(s)	760, 1034
HphI	GGTGA	3 cut(s)	539, 572, 891
Hpy166II	GTNNAC	5 cut(s)	87, 205, 275, 530, 977
Hpy188I	TCNGA	7 cut(s)	56, 105, 219, 440, 613, 682, 1002
Hpy188III	TCNNGA	6 cut(s)	458, 553, 760, 812, 1019, 1034
Hpy8I	GTNNAC	5 cut(s)	87, 205, 275, 530, 977
HpyAV	CCTTC	1 cut(s)	106
HpyCH4III	ACNGT	1 cut(s)	596
HpyCH4V	TGCA	3 cut(s)	198, 401, 653
HpyF10VI	GCNNNNNNNGC	1 cut(s)	859
HpyF3I	CTNAG	3 cut(s)	191, 610, 903
Hsp92II	CATG	5 cut(s)	122, 215, 292, 556, 667
HspAI	GCGC	1 cut(s)	483
Kpn2I	TCCGGA	2 cut(s)	759, 1033
KspAI	GTTAAC	1 cut(s)	205
Kzo9I	GATC	3 cut(s)	808, 894, 1030
LguI	GCTCTTC	2 cut(s)	105, 424
LmnI	GCTCC	6 cut(s)	57, 76, 115, 273, 604, 799
Lsp1109I	GCAGC	1 cut(s)	508
LweI	GCATC	3 cut(s)	58, 85, 849
MaeI	CTAG	2 cut(s)	518, 711
MaeIII	GTNAC	1 cut(s)	281
MalI	GATC	3 cut(s)	810, 896, 1032
MboI	GATC	3 cut(s)	808, 894, 1030
MboII	GAAGA	9 cut(s)	46, 92, 173, 293, 388, 441, 473, 793, 851
MflI	RGATCY	1 cut(s)	894
MhlI	GDGCHC	1 cut(s)	609
MlsI	TGGCCA	1 cut(s)	928
MluCI	AATT	9 cut(s)	9, 165, 394, 491, 499, 768, 919, 996, 1042
MluNI	TGGCCA	1 cut(s)	928
MlyI	GAGTC	1 cut(s)	914
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	186, 457, 588, 755, 894
Mox20I	TGGCCA	1 cut(s)	928
MroI	TCCGGA	2 cut(s)	759, 1033
MroXI	GAANNNNTTC	1 cut(s)	560
MscI	TGGCCA	1 cut(s)	928
MseI	TTAA	8 cut(s)	204, 225, 245, 351, 452, 495, 641, 1013
MslI	CAYNNNNRTG	2 cut(s)	18, 612
Msp20I	TGGCCA	1 cut(s)	928
MspI	CCGG	2 cut(s)	760, 1034
MspR9I	CCNGG	2 cut(s)	508, 635
Mva1269I	GAATGC	1 cut(s)	938
MvaI	CCWGG	2 cut(s)	508, 635
MvnI	CGCG	1 cut(s)	483
MwoI	GCNNNNNNNGC	1 cut(s)	859
NdeI	CATATG	1 cut(s)	700
NdeII	GATC	3 cut(s)	808, 894, 1030
NlaIII	CATG	5 cut(s)	122, 215, 292, 556, 667
NmeAIII	GCCGAG	1 cut(s)	202
NmuCI	GTSAC	1 cut(s)	281
NspV	TTCGAA	1 cut(s)	837
PagI	TCATGA	1 cut(s)	552
PasI	CCCWGGG	1 cut(s)	634
PciSI	GCTCTTC	2 cut(s)	105, 424
PctI	GAATGC	1 cut(s)	938
PdmI	GAANNNNTTC	1 cut(s)	560
PfeI	GAWTC	3 cut(s)	549, 958, 1037
PkrI	GCNGC	2 cut(s)	523, 881
PleI	GAGTC	1 cut(s)	913
PpsI	GAGTC	1 cut(s)	913
PshBI	ATTAAT	1 cut(s)	641
PsiI	TTATAA	1 cut(s)	420
Psp6I	CCWGG	2 cut(s)	506, 633
PspFI	CCCAGC	1 cut(s)	332
PspGI	CCWGG	2 cut(s)	506, 633
PspPI	GGNCC	3 cut(s)	707, 762, 881
PstI	CTGCAG	1 cut(s)	655
PsuI	RGATCY	1 cut(s)	894
RsaI	GTAC	3 cut(s)	48, 182, 274
RsaNI	GTAC	3 cut(s)	47, 181, 273
RseI	CAYNNNNRTG	2 cut(s)	18, 612
SapI	GCTCTTC	2 cut(s)	105, 424
SaqAI	TTAA	8 cut(s)	204, 225, 245, 351, 452, 495, 641, 1013
SatI	GCNGC	2 cut(s)	522, 880
Sau3AI	GATC	3 cut(s)	808, 894, 1030
Sau96I	GGNCC	3 cut(s)	707, 762, 881
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	2 cut(s)	508, 635
SduI	GDGCHC	1 cut(s)	609
SfaNI	GCATC	3 cut(s)	58, 85, 849
SfcI	CTRYAG	2 cut(s)	90, 651
SfuI	TTCGAA	1 cut(s)	837
SinI	GGWCC	2 cut(s)	707, 762
SmiMI	CAYNNNNRTG	2 cut(s)	18, 612
SmlI	CTYRAG	1 cut(s)	584
SmoI	CTYRAG	1 cut(s)	584
Sse9I	AATT	9 cut(s)	9, 165, 394, 491, 499, 768, 919, 996, 1042
SsiI	CCGC	4 cut(s)	158, 742, 879, 892
SspI	AATATT	1 cut(s)	235
SspMI	CTAG	2 cut(s)	518, 711
StyD4I	CCNGG	2 cut(s)	506, 633
StyI	CCWWGG	2 cut(s)	733, 874
TaaI	ACNGT	1 cut(s)	596
TaqI	TCGA	2 cut(s)	385, 837
TaqII	GACCGA	1 cut(s)	458
TasI	AATT	9 cut(s)	9, 165, 394, 491, 499, 768, 919, 996, 1042
TatI	WGTACW	1 cut(s)	46
TauI	GCSGC	1 cut(s)	882
TfiI	GAWTC	3 cut(s)	549, 958, 1037
Tru1I	TTAA	8 cut(s)	204, 225, 245, 351, 452, 495, 641, 1013
Tru9I	TTAA	8 cut(s)	204, 225, 245, 351, 452, 495, 641, 1013
TscAI	CASTG	1 cut(s)	660
TseFI	GTSAC	1 cut(s)	281
TseI	GCWGC	1 cut(s)	521
Tsp45I	GTSAC	1 cut(s)	281
TspDTI	ATGAA	7 cut(s)	125, 254, 277, 405, 541, 569, 793
TspGWI	ACGGA	2 cut(s)	260, 554
TspRI	CASTG	1 cut(s)	660
VpaK11BI	GGWCC	2 cut(s)	707, 762
VspI	ATTAAT	1 cut(s)	641
XapI	RAATTY	6 cut(s)	9, 394, 491, 919, 996, 1042
XmiI	GTMKAC	1 cut(s)	86
XmnI	GAANNNNTTC	1 cut(s)	560
XspI	CTAG	2 cut(s)	518, 711

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.