Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0001227

Physical Location & Seq

Genomic Coordinates Forward (+)

27391360 .. 27398343

Gene Structure 6984 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00187950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGCTCCCAATCGTTTGGTCAAGCATTATATCAAAGAAGCAGACAAGTGGTTTTCAGGGAATCTATGATGTTGAGCATTTCATCAAGTCATTAAGGTTTGATGTAAATATTGTAGAAAAGATGCCTGAAATTCGCAAAAATGGGAAGACCAAGAAGATAAAAGCTGTACAGCTCCGACCACCAAGAGATGCTCCTATCAGTTGGTATACTACAGATGCTCTTCAGAAAATGAAGGAGCATGGGGCTATCTATCTAACTCCCTTTTCACATCGTTTGGCGGAAGAAATTGACAACTCCGAGTACCAACGGCTGAGGTGCAGGGTTAACTGTCATGCTCTGATATTTAAGCCAAATATTATGAAGTTAAGTCAATCAATAGTTGATAAGCTCCGCACACAAGGTCACTTCATTTCTATACATCTTCGTTTTGAGATGGATATGCTGGCATTTGCTGGGTGCTTTGATATCTTTAACCCAAAAGAGCAAGAGATTTTGAAGAAGTATCGAAATGAAAATTTTGCACCAAAGAAGCTTGTTTACAAGGAAAGAAGAGCAATCAGAAAATGCCCATTAACTCCAGAAGAGGTCGGTCTTATTTTACGCGCAATGGAATTTAACAATTCTACTAGGATATACCTAGCTGCTGGTGAACTATTTGGTGGGGAGAGATTCATGAAACCATTCCGTGCTTTGTTCCCTCACCTTGAGAACCACAATTCTGTGGAGCACTCAGATGAGCTACCAGAGAACACCCAGGGATTAATAGGGTCTGCAGTGGATTACATGGTTTGTCTCCTCTCTGATATTTTTATGCCTACATATGATGGACCTAGCAACTTTGCCAACAATCTCCTTGGACACCGCCTCTATTATGGTTTCCGGACCACAATTAGACCTGATAGAAAAGCCCTTGCTCCAAGCTTCATTGATCGTGAGAAAGGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005794 GO:0005802 GO:0012505 GO:0031410 GO:0031982 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044431 GO:0044444 GO:0044446 GO:0044464 GO:0097708 GO:0098791

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

O-FucT

Protein Analysis

314

Amino Acids

36.45

Weight (kDa)

9.36

Isoelectric Point (pI)

39.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
O-FucT	PF10250	13 - 291	2.9e-67	GDP-fucose protein O-fucosyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001227)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G04910
fragaria_vesca	FvH4_4g13740 FvH4_4g13740 FvH4_4g13740 FvH4_4g13740
malus_domestica	MD04G1012400.v1.1 MD13G1283600.v1.1
prunus_persica	Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.1G158500_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1 Prupe.5G028000_v2.0.a1
pyrus_communis	pycom04g00990 pycom420g01220
rosa_chinensis	RchiOBHm_Chr4g0414391 RchiOBHm_Chr4g0414481
rosa_laevigata	RLG00000008150 RLG00000013051 RLG00000013052
rosa_multiflora	Rmu_sc0016990.1_g000002 Rmu_sc0029306.1_g000002 Rmu_sc0037565.1_g000001
rosa_roxburghii	Rroxscaffold_5G00358250 Rroxscaffold_5G00358290 Rroxscaffold_5G00358300 Rroxscaffold_7G00187950
rosa_rugosa	Rorug04G0127900
rosa_samantha	Rh4AG185800 Rh4BG185100 Rh4CG198400 Rh4DG182900 Rh4DG184100 Rh6AG244800 Rh6AG244900 Rh6CG249000
rosa_wichuraiana	Rw4G015890 Rw4G015920 Rw4G015940 Rw6G021200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	206
AccII	CGCG	1 cut(s)	603
AccIII	TCCGGA	1 cut(s)	879
AciI	CCGC	3 cut(s)	278, 391, 862
AcsI	RAATTY	3 cut(s)	129, 514, 611
AcuI	CTGAAG	1 cut(s)	206
AfaI	GTAC	2 cut(s)	168, 302
AgsI	TTSAA	1 cut(s)	496
AjnI	CCWGG	1 cut(s)	753
AluBI	AGCT	7 cut(s)	164, 172, 388, 532, 641, 739, 921
AluI	AGCT	7 cut(s)	164, 172, 388, 532, 641, 739, 921
Alw21I	GWGCWC	1 cut(s)	729
Alw26I	GTCTC	1 cut(s)	797
Aor13HI	TCCGGA	1 cut(s)	879
ApeKI	GCWGC	1 cut(s)	641
ApoI	RAATTY	3 cut(s)	129, 514, 611
AseI	ATTAAT	1 cut(s)	761
Asp700I	GAANNNNTTC	1 cut(s)	680
AspLEI	GCGC	1 cut(s)	605
AspS9I	GGNCC	2 cut(s)	827, 882
AsuHPI	GGTGA	2 cut(s)	659, 692
AvaII	GGWCC	2 cut(s)	827, 882
BarI	GAAGNNNNNNTAC	2 cut(s)	521, 553
BbsI	GAAGAC	1 cut(s)	152
Bbv12I	GWGCWC	1 cut(s)	729
BbvCI	CCTCAGC	1 cut(s)	311
BbvI	GCAGC	1 cut(s)	628
BccI	CCATC	2 cut(s)	427, 818
BceAI	ACGGC	1 cut(s)	323
BciT130I	CCWGG	1 cut(s)	755
BcoDI	GTCTC	1 cut(s)	797
BfaI	CTAG	3 cut(s)	627, 638, 831
BfmI	CTRYAG	2 cut(s)	210, 771
BisI	GCNGC	1 cut(s)	642
BlsI	GCNGC	1 cut(s)	643
Bme1390I	CCNGG	1 cut(s)	755
Bme18I	GGWCC	2 cut(s)	827, 882
BmgT120I	GGNCC	2 cut(s)	827, 882
BmrFI	CCNGG	1 cut(s)	755
BmsI	GCATC	3 cut(s)	111, 178, 205
BpiI	GAAGAC	1 cut(s)	152
BpmI	CTGGAG	1 cut(s)	561
Bpu10I	CCTNAGC	1 cut(s)	311
BpuEI	CTTGAG	1 cut(s)	725
BsaJI	CCNNGG	3 cut(s)	753, 754, 853
BsaWI	WCCGGW	1 cut(s)	879
Bse3DI	GCAATG	1 cut(s)	612
BseAI	TCCGGA	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	755
BseDI	CCNNGG	3 cut(s)	753, 754, 853
BseMI	GCAATG	1 cut(s)	612
BseMII	CTCAG	2 cut(s)	302, 744
BseRI	GAGGAG	1 cut(s)	785
BseXI	GCAGC	1 cut(s)	628
BseYI	CCCAGC	1 cut(s)	452
BsgI	GTGCAG	1 cut(s)	337
Bsh1236I	CGCG	1 cut(s)	603
BsiHKAI	GWGCWC	1 cut(s)	729
BsiSI	CCGG	1 cut(s)	880
BsmAI	GTCTC	1 cut(s)	797
Bsp1286I	GDGCHC	1 cut(s)	729
Bsp13I	TCCGGA	1 cut(s)	879
Bsp1407I	TGTACA	1 cut(s)	166
Bsp143I	GATC	1 cut(s)	928
BspACI	CCGC	3 cut(s)	278, 391, 862
BspCNI	CTCAG	2 cut(s)	303, 743
BspEI	TCCGGA	1 cut(s)	879
BspFNI	CGCG	1 cut(s)	603
BspHI	TCATGA	1 cut(s)	672
BspMAI	CTGCAG	1 cut(s)	775
BspQI	GCTCTTC	2 cut(s)	225, 544
BsrDI	GCAATG	1 cut(s)	612
BsrGI	TGTACA	1 cut(s)	166
BssECI	CCNNGG	3 cut(s)	753, 754, 853
BssMI	GATC	1 cut(s)	928
BssNAI	GTATAC	1 cut(s)	207
BssT1I	CCWWGG	1 cut(s)	853
Bst1107I	GTATAC	1 cut(s)	207
Bst2UI	CCWGG	1 cut(s)	755
Bst4CI	ACNGT	1 cut(s)	329
Bst6I	CTCTTC	3 cut(s)	225, 544, 576
BstAUI	TGTACA	1 cut(s)	166
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	311, 730
BstFNI	CGCG	1 cut(s)	603
BstHHI	GCGC	1 cut(s)	605
BstKTI	GATC	1 cut(s)	931
BstMAI	GTCTC	1 cut(s)	797
BstMBI	GATC	1 cut(s)	928
BstNI	CCWGG	1 cut(s)	755
BstSCI	CCNGG	1 cut(s)	753
BstSFI	CTRYAG	2 cut(s)	210, 771
BstUI	CGCG	1 cut(s)	603
BstV1I	GCAGC	1 cut(s)	628
BstV2I	GAAGAC	1 cut(s)	152
BstXI	CCANNNNNNTGG	1 cut(s)	15
BstZ17I	GTATAC	1 cut(s)	207
BtsI	GCAGTG	1 cut(s)	780
BtsIMutI	CAGTG	1 cut(s)	780
Cac8I	GCNNGC	1 cut(s)	444
CciI	TCATGA	1 cut(s)	672
CfoI	GCGC	1 cut(s)	605
Cfr13I	GGNCC	2 cut(s)	827, 882
Csp6I	GTAC	2 cut(s)	167, 301
CviAII	CATG	4 cut(s)	239, 332, 673, 784
CviQI	GTAC	2 cut(s)	167, 301
DdeI	CTNAG	2 cut(s)	311, 730
DpnI	GATC	1 cut(s)	930
DpnII	GATC	1 cut(s)	928
Eam1104I	CTCTTC	3 cut(s)	225, 544, 576
EarI	CTCTTC	3 cut(s)	225, 544, 576
EciI	GGCGGA	1 cut(s)	293
Eco130I	CCWWGG	1 cut(s)	853
Eco32I	GATATC	1 cut(s)	466
Eco47I	GGWCC	2 cut(s)	827, 882
Eco57I	CTGAAG	1 cut(s)	206
EcoRII	CCWGG	1 cut(s)	753
EcoRV	GATATC	1 cut(s)	466
EcoT14I	CCWWGG	1 cut(s)	853
ErhI	CCWWGG	1 cut(s)	853
FaeI	CATG	4 cut(s)	242, 335, 676, 787
FatI	CATG	4 cut(s)	238, 331, 672, 783
FauNDI	CATATG	1 cut(s)	820
FblI	GTMKAC	1 cut(s)	206
Fnu4HI	GCNGC	1 cut(s)	642
Fsp4HI	GCNGC	1 cut(s)	642
FspBI	CTAG	3 cut(s)	627, 638, 831
GlaI	GCGC	1 cut(s)	604
GluI	GCNGC	1 cut(s)	642
GsaI	CCCAGC	1 cut(s)	456
GsuI	CTGGAG	1 cut(s)	561
HapII	CCGG	1 cut(s)	880
HhaI	GCGC	1 cut(s)	605
Hin1II	CATG	4 cut(s)	242, 335, 676, 787
Hin6I	GCGC	1 cut(s)	603
HinP1I	GCGC	1 cut(s)	603
HincII	GTYRAC	1 cut(s)	325
HindII	GTYRAC	1 cut(s)	325
HindIII	AAGCTT	2 cut(s)	530, 919
HinfI	GANTC	2 cut(s)	60, 669
HpaI	GTTAAC	1 cut(s)	325
HpaII	CCGG	1 cut(s)	880
HphI	GGTGA	2 cut(s)	659, 692
Hpy166II	GTNNAC	4 cut(s)	207, 325, 538, 650
Hpy188I	TCNGA	7 cut(s)	176, 225, 298, 339, 560, 733, 802
Hpy188III	TCNNGA	4 cut(s)	578, 673, 880, 932
Hpy8I	GTNNAC	4 cut(s)	207, 325, 538, 650
HpyAV	CCTTC	1 cut(s)	226
HpyCH4III	ACNGT	1 cut(s)	329
HpyCH4V	TGCA	3 cut(s)	318, 521, 773
HpyF3I	CTNAG	2 cut(s)	311, 730
Hsp92II	CATG	4 cut(s)	242, 335, 676, 787
HspAI	GCGC	1 cut(s)	603
Kpn2I	TCCGGA	1 cut(s)	879
KspAI	GTTAAC	1 cut(s)	325
Kzo9I	GATC	1 cut(s)	928
LguI	GCTCTTC	2 cut(s)	225, 544
LmnI	GCTCC	7 cut(s)	9, 177, 196, 235, 393, 724, 919
Lsp1109I	GCAGC	1 cut(s)	628
LweI	GCATC	3 cut(s)	111, 178, 205
MaeI	CTAG	3 cut(s)	627, 638, 831
MaeIII	GTNAC	1 cut(s)	401
MalI	GATC	1 cut(s)	930
MboI	GATC	1 cut(s)	928
MboII	GAAGA	8 cut(s)	157, 166, 212, 293, 413, 508, 561, 593
MhlI	GDGCHC	1 cut(s)	729
MluCI	AATT	7 cut(s)	129, 285, 514, 611, 619, 715, 888
MmeI	TCCRAC	1 cut(s)	199
MnlI	CCTC	5 cut(s)	306, 577, 708, 806, 875
MroI	TCCGGA	1 cut(s)	879
MroXI	GAANNNNTTC	1 cut(s)	680
MseI	TTAA	8 cut(s)	92, 324, 345, 365, 471, 572, 615, 761
MslI	CAYNNNNRTG	1 cut(s)	732
MspI	CCGG	1 cut(s)	880
MspR9I	CCNGG	1 cut(s)	755
MvaI	CCWGG	1 cut(s)	755
MvnI	CGCG	1 cut(s)	603
NdeI	CATATG	1 cut(s)	820
NdeII	GATC	1 cut(s)	928
NlaIII	CATG	4 cut(s)	242, 335, 676, 787
NmuCI	GTSAC	1 cut(s)	401
PagI	TCATGA	1 cut(s)	672
PasI	CCCWGGG	1 cut(s)	754
PciSI	GCTCTTC	2 cut(s)	225, 544
PdmI	GAANNNNTTC	1 cut(s)	680
PfeI	GAWTC	2 cut(s)	60, 669
PkrI	GCNGC	1 cut(s)	643
PshBI	ATTAAT	1 cut(s)	761
Psp6I	CCWGG	1 cut(s)	753
PspFI	CCCAGC	1 cut(s)	452
PspGI	CCWGG	1 cut(s)	753
PspPI	GGNCC	2 cut(s)	827, 882
PstI	CTGCAG	1 cut(s)	775
RsaI	GTAC	2 cut(s)	168, 302
RsaNI	GTAC	2 cut(s)	167, 301
RseI	CAYNNNNRTG	1 cut(s)	732
SapI	GCTCTTC	2 cut(s)	225, 544
SaqAI	TTAA	8 cut(s)	92, 324, 345, 365, 471, 572, 615, 761
SatI	GCNGC	1 cut(s)	642
Sau3AI	GATC	1 cut(s)	928
Sau96I	GGNCC	2 cut(s)	827, 882
ScrFI	CCNGG	1 cut(s)	755
SduI	GDGCHC	1 cut(s)	729
SfaNI	GCATC	3 cut(s)	111, 178, 205
SfcI	CTRYAG	2 cut(s)	210, 771
SinI	GGWCC	2 cut(s)	827, 882
SmiMI	CAYNNNNRTG	1 cut(s)	732
SmlI	CTYRAG	1 cut(s)	704
SmoI	CTYRAG	1 cut(s)	704
Sse9I	AATT	7 cut(s)	129, 285, 514, 611, 619, 715, 888
SsiI	CCGC	3 cut(s)	278, 391, 862
SspI	AATATT	2 cut(s)	109, 355
SspMI	CTAG	3 cut(s)	627, 638, 831
StyD4I	CCNGG	1 cut(s)	753
StyI	CCWWGG	1 cut(s)	853
TaaI	ACNGT	1 cut(s)	329
TaqI	TCGA	1 cut(s)	505
TaqII	GACCGA	1 cut(s)	578
TasI	AATT	7 cut(s)	129, 285, 514, 611, 619, 715, 888
TatI	WGTACW	1 cut(s)	166
TfiI	GAWTC	2 cut(s)	60, 669
Tru1I	TTAA	8 cut(s)	92, 324, 345, 365, 471, 572, 615, 761
Tru9I	TTAA	8 cut(s)	92, 324, 345, 365, 471, 572, 615, 761
TscAI	CASTG	1 cut(s)	780
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	1 cut(s)	641
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	8 cut(s)	70, 245, 374, 397, 525, 661, 689, 913
TspGWI	ACGGA	1 cut(s)	674
TspRI	CASTG	1 cut(s)	780
VpaK11BI	GGWCC	2 cut(s)	827, 882
VspI	ATTAAT	1 cut(s)	761
XapI	RAATTY	3 cut(s)	129, 514, 611
XmiI	GTMKAC	1 cut(s)	206
XmnI	GAANNNNTTC	1 cut(s)	680
XspI	CTAG	3 cut(s)	627, 638, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.