Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

10409640 .. 10411765

Gene Structure 2126 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1085800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGTGGAGGTTTAAGCCTTTCATGCACAAGGAGCCAACCGGGCTCGAAGGTCGATCCATTGACGTTGGAAATGTCAAGATTCATGTCAAGAATGCCATTGCCGAAGGCGGGTTCTCTTGCGTTTACTTAGCCCGGGACGCCGTGCATGTGTCCAAGCAGTATGCTTTGAAGCACATCATTATTAATGATGAGGAGCTGCTGGAGTTGGTGATGAAGGAGATCTCGGTCATGAAGTTGCTCAGAGGACACCCCAATGTGGTCACACTTTGTGCCCACACCATCTTGGATATGGGGCGCACAAAGGAAGCTCTCCTTGTGATGGATTTTTGTGAAAAGAGTCTGGTGAATGTACTCGAGAGCAGAGGAGCCGGGTTCTTTGAGGAGAAACAGGTTCTTGCTATCTTCAGGGATGTGTGCAATGCAGTTTTCGCAATGCACTCACAATCCCCTCCCATTGCTCATAGGGACTTGAAAGCTGAGAATCTTCTTTTGGGGCCTGATGGATTGTGGAAGTTGTGTGATTTTGGAAGCATCTCTACCAATCACAAGCGTTTCGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACAATATTAGAAAGCACACAACACCGGCCTATAGAGCCCCTGAGATGTGGGATCTCTTTCGGAGAGAGCTTATAAACGAGAAAGTAGACATATGGGCTCTTGGGTGTCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTTGATGGAGAATCAAAGCTGCAGATCTTAAATGGAAACTATCGCATTCCAGAATTACCTAAATACAGCTCATCTATCACAGATCTAATCAGAGACATGCTTCAGTCTTCACCAGATGACAGACCAGACATCACGCAGGCAAGCTCTTTGCTTGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

295

Amino Acids

33.54

Weight (kDa)

6.09

Isoelectric Point (pI)

45.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 289	1.9e-25	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 289	1.6e-41	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	659
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	1 cut(s)	108
AclWI	GGATC	2 cut(s)	48, 645
AcuI	CTGAAG	3 cut(s)	388, 585, 812
AcyI	GRCGYC	1 cut(s)	138
AdeI	CACNNNGTG	1 cut(s)	269
AfaI	GTAC	1 cut(s)	351
AfiI	CCNNNNNNNGG	3 cut(s)	108, 256, 319
AgsI	TTSAA	4 cut(s)	169, 472, 581, 718
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AluBI	AGCT	7 cut(s)	196, 308, 476, 655, 745, 795, 870
AluI	AGCT	7 cut(s)	196, 308, 476, 655, 745, 795, 870
Alw26I	GTCTC	1 cut(s)	813
AlwI	GGATC	2 cut(s)	48, 645
Ama87I	CYCGRG	2 cut(s)	132, 353
AoxI	GGCC	2 cut(s)	494, 612
ApeKI	GCWGC	2 cut(s)	196, 745
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	1 cut(s)	297
AspS9I	GGNCC	1 cut(s)	494
AsuC2I	CCSGG	4 cut(s)	40, 133, 134, 370
AsuHPI	GGTGA	3 cut(s)	220, 355, 828
AvaI	CYCGRG	2 cut(s)	132, 353
BaeGI	GKGCMC	1 cut(s)	274
BanII	GRGCYC	3 cut(s)	45, 625, 685
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BbsI	GAAGAC	3 cut(s)	591, 686, 825
BbvI	GCAGC	2 cut(s)	183, 732
BccI	CCATC	4 cut(s)	287, 313, 494, 725
BceAI	ACGGC	1 cut(s)	125
BcnI	CCSGG	4 cut(s)	40, 133, 134, 370
BcoDI	GTCTC	1 cut(s)	813
BfmI	CTRYAG	2 cut(s)	616, 746
BglI	GCCNNNNNGGC	1 cut(s)	40
BglII	AGATCT	3 cut(s)	219, 750, 808
BisI	GCNGC	2 cut(s)	197, 746
BlsI	GCNGC	2 cut(s)	198, 747
Bme1390I	CCNGG	4 cut(s)	40, 133, 134, 370
BmeT110I	CYCGRG	2 cut(s)	132, 353
BmgT120I	GGNCC	1 cut(s)	494
BmiI	GGNNCC	3 cut(s)	33, 367, 495
BmrFI	CCNGG	4 cut(s)	40, 133, 134, 370
BmsI	GCATC	1 cut(s)	540
BpiI	GAAGAC	3 cut(s)	591, 686, 825
BpmI	CTGGAG	1 cut(s)	221
BpuMI	CCSGG	4 cut(s)	40, 133, 134, 370
BsaHI	GRCGYC	1 cut(s)	138
BsaJI	CCNNGG	1 cut(s)	132
Bsc4I	CCNNNNNNNGG	3 cut(s)	108, 256, 319
Bse118I	RCCGGY	1 cut(s)	610
Bse3DI	GCAATG	4 cut(s)	96, 424, 438, 453
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	1 cut(s)	415
BseLI	CCNNNNNNNGG	3 cut(s)	108, 256, 319
BseMI	GCAATG	4 cut(s)	96, 424, 438, 453
BseMII	CTCAG	3 cut(s)	253, 468, 618
BseRI	GAGGAG	3 cut(s)	206, 378, 395
BseSI	GKGCMC	1 cut(s)	274
BseXI	GCAGC	2 cut(s)	183, 732
BshFI	GGCC	2 cut(s)	496, 614
BsiHKCI	CYCGRG	2 cut(s)	132, 353
BsiSI	CCGG	4 cut(s)	39, 133, 369, 611
BslFI	GGGAC	2 cut(s)	149, 479
BslI	CCNNNNNNNGG	3 cut(s)	108, 256, 319
BsmAI	GTCTC	1 cut(s)	813
BsmFI	GGGAC	2 cut(s)	149, 479
BsmI	GAATGC	2 cut(s)	97, 771
BsnI	GGCC	2 cut(s)	496, 614
BsoBI	CYCGRG	2 cut(s)	132, 353
Bsp1286I	GDGCHC	4 cut(s)	45, 274, 625, 685
Bsp143I	GATC	5 cut(s)	53, 219, 637, 750, 808
BspACI	CCGC	1 cut(s)	108
BspANI	GGCC	2 cut(s)	496, 614
BspCNI	CTCAG	3 cut(s)	252, 469, 619
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	3 cut(s)	33, 367, 495
BspMAI	CTGCAG	1 cut(s)	750
BspPI	GGATC	2 cut(s)	48, 645
BsrDI	GCAATG	4 cut(s)	96, 424, 438, 453
BsrFI	RCCGGY	1 cut(s)	610
BssAI	RCCGGY	1 cut(s)	610
BssECI	CCNNGG	1 cut(s)	132
BssMI	GATC	5 cut(s)	53, 219, 637, 750, 808
BssNI	GRCGYC	1 cut(s)	138
BstACI	GRCGYC	1 cut(s)	138
BstC8I	GCNNGC	2 cut(s)	864, 868
BstDEI	CTNAG	4 cut(s)	127, 239, 477, 627
BstF5I	GGATG	1 cut(s)	415
BstHHI	GCGC	1 cut(s)	297
BstKTI	GATC	5 cut(s)	56, 222, 640, 753, 811
BstMAI	GTCTC	1 cut(s)	813
BstMBI	GATC	5 cut(s)	53, 219, 637, 750, 808
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 31, 40, 137, 428, 620
BstNSI	RCATGY	2 cut(s)	149, 826
BstSCI	CCNGG	4 cut(s)	38, 131, 132, 368
BstSFI	CTRYAG	2 cut(s)	616, 746
BstSLI	GKGCMC	1 cut(s)	274
BstV1I	GCAGC	2 cut(s)	183, 732
BstV2I	GAAGAC	3 cut(s)	591, 686, 825
BstX2I	RGATCY	4 cut(s)	219, 637, 750, 808
BstYI	RGATCY	4 cut(s)	219, 637, 750, 808
BsuRI	GGCC	2 cut(s)	496, 614
BtsCI	GGATG	1 cut(s)	415
Cac8I	GCNNGC	2 cut(s)	864, 868
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	1 cut(s)	297
Cfr10I	RCCGGY	1 cut(s)	610
Cfr13I	GGNCC	1 cut(s)	494
Cfr9I	CCCGGG	1 cut(s)	132
CseI	GACGC	1 cut(s)	146
Csp6I	GTAC	1 cut(s)	350
CviAII	CATG	5 cut(s)	22, 83, 146, 229, 823
CviQI	GTAC	1 cut(s)	350
DdeI	CTNAG	4 cut(s)	127, 239, 477, 627
DpnI	GATC	5 cut(s)	55, 221, 639, 752, 810
DpnII	GATC	5 cut(s)	53, 219, 637, 750, 808
DraIII	CACNNNGTG	1 cut(s)	269
Eco24I	GRGCYC	3 cut(s)	45, 625, 685
Eco57I	CTGAAG	3 cut(s)	388, 585, 812
Eco88I	CYCGRG	2 cut(s)	132, 353
EcoO109I	RGGNCCY	1 cut(s)	494
EcoT38I	GRGCYC	3 cut(s)	45, 625, 685
FaeI	CATG	5 cut(s)	25, 86, 149, 232, 826
FalI	AAGNNNNNCTT	2 cut(s)	297, 329
FaqI	GGGAC	2 cut(s)	149, 479
FatI	CATG	5 cut(s)	21, 82, 145, 228, 822
FauI	CCCGC	1 cut(s)	101
FauNDI	CATATG	1 cut(s)	677
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	197, 746
FokI	GGATG	1 cut(s)	422
FriOI	GRGCYC	3 cut(s)	45, 625, 685
Fsp4HI	GCNGC	2 cut(s)	197, 746
GlaI	GCGC	1 cut(s)	296
GluI	GCNGC	2 cut(s)	197, 746
GsuI	CTGGAG	1 cut(s)	221
HaeIII	GGCC	2 cut(s)	496, 614
HapII	CCGG	4 cut(s)	39, 133, 369, 611
HgaI	GACGC	1 cut(s)	146
HhaI	GCGC	1 cut(s)	297
Hin1I	GRCGYC	1 cut(s)	138
Hin1II	CATG	5 cut(s)	25, 86, 149, 232, 826
Hin6I	GCGC	1 cut(s)	295
HinP1I	GCGC	1 cut(s)	295
HinfI	GANTC	4 cut(s)	79, 337, 481, 737
HpaII	CCGG	4 cut(s)	39, 133, 369, 611
HphI	GGTGA	3 cut(s)	220, 355, 828
Hpy166II	GTNNAC	2 cut(s)	124, 673
Hpy188I	TCNGA	3 cut(s)	242, 648, 818
Hpy188III	TCNNGA	6 cut(s)	76, 88, 229, 355, 556, 776
Hpy8I	GTNNAC	2 cut(s)	124, 673
HpyAV	CCTTC	3 cut(s)	41, 98, 208
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	7 cut(s)	25, 145, 417, 422, 436, 725, 748
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 31, 40, 137, 428, 620
HpyF3I	CTNAG	4 cut(s)	127, 239, 477, 627
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	138
Hsp92II	CATG	5 cut(s)	25, 86, 149, 232, 826
HspAI	GCGC	1 cut(s)	295
Kzo9I	GATC	5 cut(s)	53, 219, 637, 750, 808
LmnI	GCTCC	3 cut(s)	31, 193, 365
Lsp1109I	GCAGC	2 cut(s)	183, 732
LweI	GCATC	1 cut(s)	540
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	1 cut(s)	259
MalI	GATC	5 cut(s)	55, 221, 639, 752, 810
MboI	GATC	5 cut(s)	53, 219, 637, 750, 808
MboII	GAAGA	7 cut(s)	394, 476, 578, 593, 596, 686, 825
MflI	RGATCY	4 cut(s)	219, 637, 750, 808
MhlI	GDGCHC	4 cut(s)	45, 274, 625, 685
MluCI	AATT	1 cut(s)	779
MlyI	GAGTC	1 cut(s)	346
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	5 cut(s)	184, 236, 356, 373, 459
MseI	TTAA	3 cut(s)	12, 183, 755
MslI	CAYNNNNRTG	1 cut(s)	252
MspI	CCGG	4 cut(s)	39, 133, 369, 611
MspR9I	CCNGG	4 cut(s)	40, 133, 134, 370
Mva1269I	GAATGC	2 cut(s)	97, 771
MwoI	GCNNNNNNNGC	6 cut(s)	22, 31, 40, 137, 428, 620
NciI	CCSGG	4 cut(s)	40, 133, 134, 370
NdeI	CATATG	1 cut(s)	677
NdeII	GATC	5 cut(s)	53, 219, 637, 750, 808
NlaIII	CATG	5 cut(s)	25, 86, 149, 232, 826
NlaIV	GGNNCC	3 cut(s)	33, 367, 495
NmuCI	GTSAC	1 cut(s)	259
NspI	RCATGY	2 cut(s)	149, 826
PaeR7I	CTCGAG	1 cut(s)	353
PagI	TCATGA	1 cut(s)	228
PctI	GAATGC	2 cut(s)	97, 771
PfeI	GAWTC	3 cut(s)	79, 481, 737
PkrI	GCNGC	2 cut(s)	198, 747
PleI	GAGTC	1 cut(s)	345
PpsI	GAGTC	1 cut(s)	345
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	659
PspN4I	GGNNCC	3 cut(s)	33, 367, 495
PspPI	GGNCC	1 cut(s)	494
PstI	CTGCAG	1 cut(s)	750
PsuI	RGATCY	4 cut(s)	219, 637, 750, 808
RsaI	GTAC	1 cut(s)	351
RsaNI	GTAC	1 cut(s)	350
RseI	CAYNNNNRTG	1 cut(s)	252
SaqAI	TTAA	3 cut(s)	12, 183, 755
SatI	GCNGC	2 cut(s)	197, 746
Sau3AI	GATC	5 cut(s)	53, 219, 637, 750, 808
Sau96I	GGNCC	1 cut(s)	494
SchI	GAGTC	1 cut(s)	346
ScrFI	CCNGG	4 cut(s)	40, 133, 134, 370
SduI	GDGCHC	4 cut(s)	45, 274, 625, 685
SfaNI	GCATC	1 cut(s)	540
SfcI	CTRYAG	2 cut(s)	616, 746
Sfr274I	CTCGAG	1 cut(s)	353
SlaI	CTCGAG	1 cut(s)	353
SmaI	CCCGGG	1 cut(s)	134
SmiMI	CAYNNNNRTG	1 cut(s)	252
SmlI	CTYRAG	1 cut(s)	353
SmoI	CTYRAG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	779
SsiI	CCGC	1 cut(s)	108
SspI	AATATT	1 cut(s)	592
StyD4I	CCNGG	4 cut(s)	38, 131, 132, 368
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	45, 52, 354, 555
TaqII	GACCGA	1 cut(s)	214
TasI	AATT	1 cut(s)	779
TatI	WGTACW	1 cut(s)	349
TfiI	GAWTC	3 cut(s)	79, 481, 737
Tru1I	TTAA	3 cut(s)	12, 183, 755
Tru9I	TTAA	3 cut(s)	12, 183, 755
TseFI	GTSAC	1 cut(s)	259
TseI	GCWGC	2 cut(s)	196, 745
Tsp45I	GTSAC	1 cut(s)	259
TspDTI	ATGAA	4 cut(s)	10, 71, 227, 245
TspMI	CCCGGG	1 cut(s)	132
VspI	ATTAAT	1 cut(s)	183
XceI	RCATGY	2 cut(s)	149, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	353
XmaI	CCCGGG	1 cut(s)	132
XmiI	GTMKAC	1 cut(s)	672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.