RchiOBHm_Chr1g0313511

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001175
Physical Location & Seq
Reverse (-)
551754 .. 552740
987 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54432

Sequence Viewer

Length: 987 bp
ATGGCCTTCTCTGTTCTCCACTTGCTTGCGCTTTACCTTATCGTCCAACCATTTTGTGTACATGCTGCTCAAACTGCAAATATAAGCTTGGGGTTGTCCCTAACTGCATCAGACAACTCTCTTTCGTGGCAATCTCCCTCCGGAGAATTTGCGTTTGGGTTTCGCCGTATTGGTGATCAGGACCTCTTCTTGCTTGCCATTTGGTATGACAAGATTCCAGAAAAGACTCTTGTTTGGTATGCAAATGGAGACAATCCAACACCAAAAGGATCCAAAGTGGAGCTCACAAAAGATGGTAATTTCAGGCTCACTGGCCCTCGGAAAGAGGAAATCTGGCCGCAGCCTGTTATTAGTGGAGTTGCTTATGCTGCCATGCTTGACTCAGGTAACTTTGTTCTTGCAGACCAGAATTCAGCTCTTTTATGGCAGAGCTTCAAAGACCCCAGAGACACCATTTTACCAACCCAAGTGTTGGAAATTGGAGAAAAGCTATCTTCTAGGCAGACTGCAAGCAACTACTCAAAGGGGAAGTTTCAACTCCAATTTAAACCAGACGGTACGCTTGAGTTGTACCCCATAGCCTTGCCTACGGAGTTTGAATATGATGCTTACTACAAAAGCAATACATCTGATGCAGCTGATAAATTGAATTCTGGCTATCAGCTAGTCTTCAATGAGTCGGGTCATATCAACATTGTTCTGCGGAATGGAAATATAGTAACCCTCACAAACAAAACCGTATCGCCATCAAGAGATTACTATTACAGAGCAACACTAGATTTTGATGGGCTTTTTACCCTATATGCTTATCCAAAAAAGGGAGCGGGACATCCTGGTCCTCTTTGTGGTCTATCCCAGAAAACATTTGCTTCGCCTTCGATTCAACTGGAGAGGAGGGCGGCGGGCCATGTGGATATAACAGTTACTGCAGACTTGATGCAAACACAAGGCCAATTTGTGATTGCGTTCCTGGCTTTTCTGCTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

328

Amino Acids

36.36

Weight (kDa)

5.97

Isoelectric Point (pI)

35.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 165 1.8e-15 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 834
AccB7I CCANNNNNTGG 1 cut(s) 472
AccBSI CCGCTC 1 cut(s) 824
AccIII TCCGGA 1 cut(s) 140
AciI CCGC 5 cut(s) 338, 703, 824, 899, 902
AclWI GGATC 2 cut(s) 264, 277
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 3 cut(s) 146, 409, 649
AfaI GTAC 3 cut(s) 60, 559, 572
AfiI CCNNNNNNNGG 3 cut(s) 472, 818, 845
AgsI TTSAA 6 cut(s) 436, 536, 599, 649, 673, 884
AjnI CCWGG 2 cut(s) 832, 969
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AluBI AGCT 7 cut(s) 87, 283, 416, 432, 490, 638, 664
AluI AGCT 7 cut(s) 87, 283, 416, 432, 490, 638, 664
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 2 cut(s) 243, 441
AlwI GGATC 2 cut(s) 264, 277
AlwNI CAGNNNCTG 1 cut(s) 926
Aor13HI TCCGGA 1 cut(s) 140
AoxI GGCC 5 cut(s) 3, 313, 335, 904, 949
ApeKI GCWGC 4 cut(s) 65, 340, 368, 635
ApoI RAATTY 3 cut(s) 146, 409, 649
AspLEI GCGC 1 cut(s) 31
AspS9I GGNCC 4 cut(s) 181, 314, 836, 904
AsuHPI GGTGA 1 cut(s) 185
AvaII GGWCC 2 cut(s) 181, 836
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 4 cut(s) 52, 352, 355, 647
BccI CCATC 3 cut(s) 287, 754, 779
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 834, 971
BclI TGATCA 1 cut(s) 175
BcoDI GTCTC 2 cut(s) 243, 441
BfaI CTAG 3 cut(s) 498, 665, 776
BfmI CTRYAG 1 cut(s) 927
BisI GCNGC 6 cut(s) 66, 338, 341, 369, 636, 900
BlsI GCNGC 6 cut(s) 67, 339, 342, 370, 637, 901
Bme1390I CCNGG 2 cut(s) 834, 971
Bme18I GGWCC 2 cut(s) 181, 836
BmgT120I GGNCC 4 cut(s) 181, 314, 836, 904
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 2 cut(s) 834, 971
BmsI GCATC 4 cut(s) 116, 595, 622, 927
BpiI GAAGAC 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 908
BpuEI CTTGAG 1 cut(s) 584
BsaJI CCNNGG 1 cut(s) 317
BsaWI WCCGGW 1 cut(s) 140
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 818, 845
Bse1I ACTGG 2 cut(s) 316, 891
BseAI TCCGGA 1 cut(s) 140
BseBI CCWGG 2 cut(s) 834, 971
BseDI CCNNGG 1 cut(s) 317
BseGI GGATG 1 cut(s) 829
BseLI CCNNNNNNNGG 3 cut(s) 472, 818, 845
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 2 cut(s) 316, 891
BseRI GAGGAG 1 cut(s) 907
BseXI GCAGC 4 cut(s) 52, 352, 355, 647
BshFI GGCC 5 cut(s) 5, 315, 337, 906, 951
BsiHKAI GWGCWC 1 cut(s) 285
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 82, 840
BslI CCNNNNNNNGG 3 cut(s) 472, 818, 845
BsmAI GTCTC 2 cut(s) 243, 441
BsmFI GGGAC 2 cut(s) 82, 840
BsnI GGCC 5 cut(s) 5, 315, 337, 906, 951
Bsp1286I GDGCHC 1 cut(s) 285
Bsp13I TCCGGA 1 cut(s) 140
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 2 cut(s) 175, 269
BspACI CCGC 5 cut(s) 338, 703, 824, 899, 902
BspANI GGCC 5 cut(s) 5, 315, 337, 906, 951
BspCNI CTCAG 1 cut(s) 395
BspEI TCCGGA 1 cut(s) 140
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 931
BspPI GGATC 2 cut(s) 264, 277
BsrBI CCGCTC 1 cut(s) 824
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 2 cut(s) 316, 891
BssECI CCNNGG 1 cut(s) 317
BssMI GATC 2 cut(s) 175, 269
Bst2UI CCWGG 2 cut(s) 834, 971
Bst4CI ACNGT 3 cut(s) 557, 739, 922
Bst6I CTCTTC 1 cut(s) 191
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 4 cut(s) 27, 195, 511, 904
BstDEI CTNAG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 829
BstHHI GCGC 1 cut(s) 31
BstKTI GATC 2 cut(s) 178, 272
BstMAI GTCTC 2 cut(s) 243, 441
BstMBI GATC 2 cut(s) 175, 269
BstMWI GCNNNNNNNGC 3 cut(s) 74, 368, 971
BstNI CCWGG 2 cut(s) 834, 971
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 2 cut(s) 832, 969
BstSFI CTRYAG 1 cut(s) 927
BstV1I GCAGC 4 cut(s) 52, 352, 355, 647
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 1 cut(s) 269
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 5 cut(s) 5, 315, 337, 906, 951
BtsCI GGATG 1 cut(s) 829
BtsIMutI CAGTG 1 cut(s) 309
Cac8I GCNNGC 4 cut(s) 27, 195, 511, 904
CaiI CAGNNNCTG 1 cut(s) 926
CfoI GCGC 1 cut(s) 31
Cfr13I GGNCC 4 cut(s) 181, 314, 836, 904
Csp6I GTAC 3 cut(s) 59, 558, 571
CviAII CATG 3 cut(s) 62, 373, 908
CviQI GTAC 3 cut(s) 59, 558, 571
DdeI CTNAG 1 cut(s) 382
DpnI GATC 2 cut(s) 177, 271
DpnII GATC 2 cut(s) 175, 269
DraI TTTAAA 1 cut(s) 547
DrdI GACNNNNNNGTC 1 cut(s) 834
DseDI GACNNNNNNGTC 1 cut(s) 834
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 1 cut(s) 191
EarI CTCTTC 1 cut(s) 191
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 285
Eco47I GGWCC 2 cut(s) 181, 836
Eco53kI GAGCTC 1 cut(s) 283
EcoICRI GAGCTC 1 cut(s) 283
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 2 cut(s) 409, 649
EcoRII CCWGG 2 cut(s) 832, 969
EcoT38I GRGCYC 1 cut(s) 285
FaeI CATG 3 cut(s) 65, 376, 911
FaqI GGGAC 2 cut(s) 82, 840
FatI CATG 3 cut(s) 61, 372, 907
FauI CCCGC 2 cut(s) 817, 895
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 66, 338, 341, 369, 636, 900
FokI GGATG 1 cut(s) 816
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 6 cut(s) 66, 338, 341, 369, 636, 900
FspBI CTAG 3 cut(s) 498, 665, 776
GlaI GCGC 1 cut(s) 30
GluI GCNGC 6 cut(s) 66, 338, 341, 369, 636, 900
GsuI CTGGAG 1 cut(s) 908
HaeIII GGCC 5 cut(s) 5, 315, 337, 906, 951
HapII CCGG 1 cut(s) 141
HhaI GCGC 1 cut(s) 31
Hin1II CATG 3 cut(s) 65, 376, 911
Hin6I GCGC 1 cut(s) 29
HinP1I GCGC 1 cut(s) 29
HindIII AAGCTT 1 cut(s) 85
HinfI GANTC 5 cut(s) 214, 226, 380, 677, 880
HpaII CCGG 1 cut(s) 141
HphI GGTGA 1 cut(s) 185
Hpy166II GTNNAC 1 cut(s) 59
Hpy188I TCNGA 3 cut(s) 112, 321, 631
Hpy188III TCNNGA 4 cut(s) 141, 179, 218, 750
Hpy8I GTNNAC 1 cut(s) 59
HpyAV CCTTC 2 cut(s) 16, 885
HpyCH4III ACNGT 3 cut(s) 557, 739, 922
HpyCH4V TGCA 8 cut(s) 77, 107, 242, 401, 509, 635, 929, 940
HpyF10VI GCNNNNNNNGC 3 cut(s) 74, 368, 971
HpyF3I CTNAG 1 cut(s) 382
Hsp92II CATG 3 cut(s) 65, 376, 911
HspAI GCGC 1 cut(s) 29
Kpn2I TCCGGA 1 cut(s) 140
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 2 cut(s) 175, 269
LmnI GCTCC 2 cut(s) 280, 821
Lsp1109I GCAGC 4 cut(s) 52, 352, 355, 647
LweI GCATC 4 cut(s) 116, 595, 622, 927
MaeI CTAG 3 cut(s) 498, 665, 776
MaeIII GTNAC 3 cut(s) 386, 718, 922
MalI GATC 2 cut(s) 177, 271
MbiI CCGCTC 1 cut(s) 824
MboI GATC 2 cut(s) 175, 269
MboII GAAGA 3 cut(s) 178, 486, 661
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 8 cut(s) 146, 298, 409, 477, 542, 644, 649, 953
MlyI GAGTC 3 cut(s) 220, 374, 686
MmeI TCCRAC 3 cut(s) 70, 281, 453
MnlI CCTC 8 cut(s) 148, 194, 319, 327, 734, 849, 885, 888
MroI TCCGGA 1 cut(s) 140
MseI TTAA 1 cut(s) 546
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 2 cut(s) 834, 971
MvaI CCWGG 2 cut(s) 834, 971
MwoI GCNNNNNNNGC 3 cut(s) 74, 368, 971
NdeII GATC 2 cut(s) 175, 269
NlaIII CATG 3 cut(s) 65, 376, 911
NlaIV GGNNCC 1 cut(s) 271
NspI RCATGY 1 cut(s) 65
PfeI GAWTC 2 cut(s) 214, 880
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 6 cut(s) 67, 339, 342, 370, 637, 901
PleI GAGTC 3 cut(s) 220, 374, 685
PpsI GAGTC 3 cut(s) 220, 374, 685
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 832, 969
PspGI CCWGG 2 cut(s) 832, 969
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 4 cut(s) 181, 314, 836, 904
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 1 cut(s) 931
PstNI CAGNNNCTG 1 cut(s) 926
PsuI RGATCY 1 cut(s) 269
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 60, 559, 572
RsaNI GTAC 3 cut(s) 59, 558, 571
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 1 cut(s) 546
SatI GCNGC 6 cut(s) 66, 338, 341, 369, 636, 900
Sau3AI GATC 2 cut(s) 175, 269
Sau96I GGNCC 4 cut(s) 181, 314, 836, 904
SchI GAGTC 3 cut(s) 220, 374, 686
ScrFI CCNGG 2 cut(s) 834, 971
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 4 cut(s) 116, 595, 622, 927
SfcI CTRYAG 1 cut(s) 927
SinI GGWCC 2 cut(s) 181, 836
SmlI CTYRAG 1 cut(s) 563
SmoI CTYRAG 1 cut(s) 563
Sse9I AATT 8 cut(s) 146, 298, 409, 477, 542, 644, 649, 953
SsiI CCGC 5 cut(s) 338, 703, 824, 899, 902
SspMI CTAG 3 cut(s) 498, 665, 776
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 2 cut(s) 832, 969
TaaI ACNGT 3 cut(s) 557, 739, 922
TaqI TCGA 1 cut(s) 878
TasI AATT 8 cut(s) 146, 298, 409, 477, 542, 644, 649, 953
TatI WGTACW 1 cut(s) 58
TauI GCSGC 2 cut(s) 340, 902
TfiI GAWTC 2 cut(s) 214, 880
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 1 cut(s) 316
TseI GCWGC 4 cut(s) 65, 340, 368, 635
TspGWI ACGGA 1 cut(s) 605
TspRI CASTG 1 cut(s) 316
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 181, 836
XapI RAATTY 3 cut(s) 146, 409, 649
XceI RCATGY 1 cut(s) 65
XspI CTAG 3 cut(s) 498, 665, 776
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.