Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

647496 .. 649148

Gene Structure 1653 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 873 bp

ATGTGGAGGTTCAAGCCTTTTATGCACAAGGAGCCAGCTGGCCTCGAAGGCCGCTCCATTGACGTCGGAACTCTCAAGATTCAGGTGAAGAATGTCATTGCCGAAGGAGGGTTCTCTTGCCACATCATATGTAATGATGAAGAGTTGCTGGAGTTGGTGATGAAGGAAATCTCCGTCATGAAGTTACTCAGAGGGCATCCCAATGTTGTCACTCTCTATGCCCACGCCATCATGGATTTGGGCCGCACAAAGGAGGCACTCCTTGTCATGGAATATTGTGACAAGTCTCTGGTTACCGTACTCGATAGCAGAGGAGCTGGCTTTTTTGATGAGAAACAGGTCCTTGCAATCTTCAGAGATGTGTGTACTGCAGTTTTTGCGATGCACACACTGTCCCCTCCCATTGCTCATAGGGATTTGAAAGCTGAGAATCTTCTGTTGGGGCCGGATGGACTGTGGAAATTGTGTGATTTTGGAAGCACCTCTACCAACCACAAGCGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACATTATCAGAAAGCACACAACACCTGCCTACAGGGCCCCTGAGATGTGGGATCTATTTCGGAGAGAACTTATCAATGAGAAAGTAGACATATGGGCTCTTGGCTGCCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTCGATGGAGAGTCAAAGCTGCAGATCTTGAATGGAAACTATCGCATTCCTGAGTTACCTAACTATGGCTCGTCGATTACCGATCTCATCAGAGACATGCTTCAGGCATCACCAGACGACAGACCAGATATCACGCAGGCAAGCGCTTTGCTTGATTGGCCATTCATCTCCATGAATTTAGGTGTGGTTTCGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

290

Amino Acids

32.91

Weight (kDa)

5.55

Isoelectric Point (pI)

41.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	47 - 272	2.3e-22	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	51 - 272	6.6e-36	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	568
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	1 cut(s)	568
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	621
AciI	CCGC	2 cut(s)	52, 244
AclWI	GGATC	1 cut(s)	594
AcoI	YGGCCR	1 cut(s)	833
AcsI	RAATTY	1 cut(s)	850
AcuI	CTGAAG	3 cut(s)	337, 534, 761
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	2 cut(s)	300, 367
AfeI	AGCGCT	2 cut(s)	500, 820
AfiI	CCNNNNNNNGG	4 cut(s)	108, 250, 268, 740
AgsI	TTSAA	5 cut(s)	13, 421, 530, 667, 706
AjuI	GAANNNNNNNTTGG	2 cut(s)	422, 454
AluBI	AGCT	4 cut(s)	38, 317, 425, 694
AluI	AGCT	4 cut(s)	38, 317, 425, 694
Alw26I	GTCTC	2 cut(s)	291, 762
AlwI	GGATC	1 cut(s)	594
Aor51HI	AGCGCT	2 cut(s)	500, 820
AoxI	GGCC	6 cut(s)	40, 49, 241, 443, 570, 833
ApaI	GGGCCC	1 cut(s)	574
ApeKI	GCWGC	2 cut(s)	639, 694
ApoI	RAATTY	1 cut(s)	850
AspLEI	GCGC	2 cut(s)	501, 821
AspS9I	GGNCC	5 cut(s)	241, 340, 443, 570, 571
AsuHPI	GGTGA	3 cut(s)	97, 169, 777
AvaII	GGWCC	1 cut(s)	340
BaeGI	GKGCMC	1 cut(s)	574
BalI	TGGCCA	1 cut(s)	835
BanII	GRGCYC	2 cut(s)	574, 634
BarI	GAAGNNNNNNTAC	2 cut(s)	469, 501
BbsI	GAAGAC	1 cut(s)	540
BbvI	GCAGC	2 cut(s)	626, 681
BccI	CCATC	3 cut(s)	236, 443, 674
BcoDI	GTCTC	2 cut(s)	291, 762
BfmI	CTRYAG	3 cut(s)	369, 565, 695
BfoI	RGCGCY	2 cut(s)	502, 822
BfuAI	ACCTGC	1 cut(s)	568
BglI	GCCNNNNNGGC	2 cut(s)	48, 569
BglII	AGATCT	1 cut(s)	699
BisI	GCNGC	4 cut(s)	52, 244, 640, 695
BlsI	GCNGC	4 cut(s)	53, 245, 641, 696
Bme18I	GGWCC	1 cut(s)	340
BmgT120I	GGNCC	5 cut(s)	241, 340, 443, 570, 571
BmiI	GGNNCC	4 cut(s)	33, 444, 572, 573
BmsI	GCATC	3 cut(s)	205, 372, 791
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	170
BpuEI	CTTGAG	1 cut(s)	59
BsaHI	GRCGYC	1 cut(s)	63
Bsc4I	CCNNNNNNNGG	4 cut(s)	108, 250, 268, 740
Bse3DI	GCAATG	2 cut(s)	96, 402
BseGI	GGATG	2 cut(s)	196, 454
BseLI	CCNNNNNNNGG	4 cut(s)	108, 250, 268, 740
BseMI	GCAATG	2 cut(s)	96, 402
BseMII	CTCAG	4 cut(s)	202, 417, 567, 717
BseRI	GAGGAG	1 cut(s)	327
BseSI	GKGCMC	1 cut(s)	574
BseXI	GCAGC	2 cut(s)	626, 681
BshFI	GGCC	6 cut(s)	42, 51, 243, 445, 572, 835
BsiSI	CCGG	1 cut(s)	446
BslFI	GGGAC	1 cut(s)	379
BslI	CCNNNNNNNGG	4 cut(s)	108, 250, 268, 740
BsmAI	GTCTC	2 cut(s)	291, 762
BsmFI	GGGAC	1 cut(s)	379
BsmI	GAATGC	2 cut(s)	674, 720
BsnI	GGCC	6 cut(s)	42, 51, 243, 445, 572, 835
Bsp120I	GGGCCC	1 cut(s)	570
Bsp1286I	GDGCHC	2 cut(s)	574, 634
Bsp143I	GATC	3 cut(s)	586, 699, 757
BspACI	CCGC	2 cut(s)	52, 244
BspANI	GGCC	6 cut(s)	42, 51, 243, 445, 572, 835
BspCNI	CTCAG	4 cut(s)	201, 418, 568, 718
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	4 cut(s)	33, 444, 572, 573
BspMAI	CTGCAG	2 cut(s)	373, 699
BspMI	ACCTGC	1 cut(s)	568
BspPI	GGATC	1 cut(s)	594
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	96, 402
BssMI	GATC	3 cut(s)	586, 699, 757
BssNI	GRCGYC	1 cut(s)	63
Bst4CI	ACNGT	3 cut(s)	298, 393, 456
Bst6I	CTCTTC	1 cut(s)	135
BstACI	GRCGYC	1 cut(s)	63
BstAPI	GCANNNNNTGC	1 cut(s)	377
BstC8I	GCNNGC	5 cut(s)	36, 40, 319, 813, 817
BstDEI	CTNAG	4 cut(s)	188, 426, 576, 726
BstEII	GGTNACC	1 cut(s)	292
BstF5I	GGATG	2 cut(s)	196, 454
BstH2I	RGCGCY	2 cut(s)	502, 822
BstHHI	GCGC	2 cut(s)	501, 821
BstKTI	GATC	3 cut(s)	589, 702, 760
BstMAI	GTCTC	2 cut(s)	291, 762
BstMBI	GATC	3 cut(s)	586, 699, 757
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 377, 569, 832
BstNSI	RCATGY	1 cut(s)	775
BstPI	GGTNACC	1 cut(s)	292
BstSFI	CTRYAG	3 cut(s)	369, 565, 695
BstSLI	GKGCMC	1 cut(s)	574
BstV1I	GCAGC	2 cut(s)	626, 681
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	2 cut(s)	586, 699
BstYI	RGATCY	2 cut(s)	586, 699
BsuRI	GGCC	6 cut(s)	42, 51, 243, 445, 572, 835
BtgZI	GCGATG	1 cut(s)	395
BtsCI	GGATG	2 cut(s)	196, 454
BtsIMutI	CAGTG	1 cut(s)	389
BveI	ACCTGC	1 cut(s)	568
Cac8I	GCNNGC	5 cut(s)	36, 40, 319, 813, 817
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	2 cut(s)	501, 821
Cfr13I	GGNCC	5 cut(s)	241, 340, 443, 570, 571
Csp6I	GTAC	2 cut(s)	299, 366
CviAII	CATG	5 cut(s)	178, 232, 268, 772, 847
CviQI	GTAC	2 cut(s)	299, 366
DdeI	CTNAG	4 cut(s)	188, 426, 576, 726
DpnI	GATC	3 cut(s)	588, 701, 759
DpnII	GATC	3 cut(s)	586, 699, 757
EaeI	YGGCCR	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	135
EarI	CTCTTC	1 cut(s)	135
Eco24I	GRGCYC	2 cut(s)	574, 634
Eco32I	GATATC	1 cut(s)	805
Eco47I	GGWCC	1 cut(s)	340
Eco47III	AGCGCT	2 cut(s)	500, 820
Eco57I	CTGAAG	3 cut(s)	337, 534, 761
Eco91I	GGTNACC	1 cut(s)	292
EcoO109I	RGGNCCY	3 cut(s)	340, 570, 571
EcoO65I	GGTNACC	1 cut(s)	292
EcoRV	GATATC	1 cut(s)	805
EcoT38I	GRGCYC	2 cut(s)	574, 634
FaeI	CATG	5 cut(s)	181, 235, 271, 775, 850
FaqI	GGGAC	1 cut(s)	379
FatI	CATG	5 cut(s)	177, 231, 267, 771, 846
FauNDI	CATATG	2 cut(s)	128, 626
FblI	GTMKAC	1 cut(s)	621
Fnu4HI	GCNGC	4 cut(s)	52, 244, 640, 695
FokI	GGATG	2 cut(s)	183, 461
FriOI	GRGCYC	2 cut(s)	574, 634
Fsp4HI	GCNGC	4 cut(s)	52, 244, 640, 695
GlaI	GCGC	2 cut(s)	500, 820
GluI	GCNGC	4 cut(s)	52, 244, 640, 695
GsuI	CTGGAG	1 cut(s)	170
HaeII	RGCGCY	2 cut(s)	502, 822
HaeIII	GGCC	6 cut(s)	42, 51, 243, 445, 572, 835
HapII	CCGG	1 cut(s)	446
HhaI	GCGC	2 cut(s)	501, 821
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	5 cut(s)	181, 235, 271, 775, 850
Hin6I	GCGC	2 cut(s)	499, 819
HinP1I	GCGC	2 cut(s)	499, 819
HinfI	GANTC	3 cut(s)	79, 430, 686
HpaII	CCGG	1 cut(s)	446
HphI	GGTGA	3 cut(s)	97, 169, 777
Hpy166II	GTNNAC	2 cut(s)	366, 622
Hpy188I	TCNGA	6 cut(s)	68, 191, 356, 545, 597, 767
Hpy188III	TCNNGA	4 cut(s)	76, 178, 703, 725
Hpy8I	GTNNAC	2 cut(s)	366, 622
Hpy99I	CGWCG	2 cut(s)	68, 751
HpyAV	CCTTC	4 cut(s)	41, 98, 157, 653
HpyCH4III	ACNGT	3 cut(s)	298, 393, 456
HpyCH4IV	ACGT	1 cut(s)	63
HpyCH4V	TGCA	6 cut(s)	25, 347, 371, 385, 674, 697
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 377, 569, 832
HpyF3I	CTNAG	4 cut(s)	188, 426, 576, 726
HpySE526I	ACGT	1 cut(s)	63
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	5 cut(s)	181, 235, 271, 775, 850
HspAI	GCGC	2 cut(s)	499, 819
Kzo9I	GATC	3 cut(s)	586, 699, 757
LmnI	GCTCC	3 cut(s)	31, 59, 314
Lsp1109I	GCAGC	2 cut(s)	626, 681
LweI	GCATC	3 cut(s)	205, 372, 791
MaeII	ACGT	1 cut(s)	63
MaeIII	GTNAC	5 cut(s)	183, 208, 278, 292, 729
MalI	GATC	3 cut(s)	588, 701, 759
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	3 cut(s)	586, 699, 757
MboII	GAAGA	7 cut(s)	100, 152, 343, 425, 527, 542, 545
MflI	RGATCY	2 cut(s)	586, 699
MhlI	GDGCHC	2 cut(s)	574, 634
MlsI	TGGCCA	1 cut(s)	835
MluCI	AATT	2 cut(s)	461, 850
MluNI	TGGCCA	1 cut(s)	835
MlyI	GAGTC	1 cut(s)	695
MmeI	TCCRAC	1 cut(s)	46
MnlI	CCTC	7 cut(s)	53, 101, 185, 247, 305, 408, 493
Mox20I	TGGCCA	1 cut(s)	835
MscI	TGGCCA	1 cut(s)	835
MseI	TTAA	1 cut(s)	871
MslI	CAYNNNNRTG	2 cut(s)	201, 845
Msp20I	TGGCCA	1 cut(s)	835
MspA1I	CMGCKG	1 cut(s)	38
MspI	CCGG	1 cut(s)	446
Mva1269I	GAATGC	2 cut(s)	674, 720
MwoI	GCNNNNNNNGC	6 cut(s)	22, 31, 48, 377, 569, 832
NdeI	CATATG	2 cut(s)	128, 626
NdeII	GATC	3 cut(s)	586, 699, 757
NlaIII	CATG	5 cut(s)	181, 235, 271, 775, 850
NlaIV	GGNNCC	4 cut(s)	33, 444, 572, 573
NmuCI	GTSAC	2 cut(s)	208, 278
NspI	RCATGY	1 cut(s)	775
PagI	TCATGA	1 cut(s)	177
PaqCI	CACCTGC	1 cut(s)	568
PctI	GAATGC	2 cut(s)	674, 720
PfeI	GAWTC	2 cut(s)	79, 430
PkrI	GCNGC	4 cut(s)	53, 245, 641, 696
PleI	GAGTC	1 cut(s)	694
PpsI	GAGTC	1 cut(s)	694
PpuMI	RGGWCCY	1 cut(s)	340
Psp5II	RGGWCCY	1 cut(s)	340
PspEI	GGTNACC	1 cut(s)	292
PspN4I	GGNNCC	4 cut(s)	33, 444, 572, 573
PspOMI	GGGCCC	1 cut(s)	570
PspPI	GGNCC	5 cut(s)	241, 340, 443, 570, 571
PspPPI	RGGWCCY	1 cut(s)	340
PstI	CTGCAG	2 cut(s)	373, 699
PsuI	RGATCY	2 cut(s)	586, 699
PvuII	CAGCTG	1 cut(s)	38
RsaI	GTAC	2 cut(s)	300, 367
RsaNI	GTAC	2 cut(s)	299, 366
RseI	CAYNNNNRTG	2 cut(s)	201, 845
SaqAI	TTAA	1 cut(s)	871
SatI	GCNGC	4 cut(s)	52, 244, 640, 695
Sau3AI	GATC	3 cut(s)	586, 699, 757
Sau96I	GGNCC	5 cut(s)	241, 340, 443, 570, 571
SchI	GAGTC	1 cut(s)	695
SduI	GDGCHC	2 cut(s)	574, 634
SfaNI	GCATC	3 cut(s)	205, 372, 791
SfcI	CTRYAG	3 cut(s)	369, 565, 695
SfiI	GGCCNNNNNGGCC	1 cut(s)	48
SinI	GGWCC	1 cut(s)	340
SmiMI	CAYNNNNRTG	2 cut(s)	201, 845
SmlI	CTYRAG	1 cut(s)	74
SmoI	CTYRAG	1 cut(s)	74
Sse9I	AATT	2 cut(s)	461, 850
SsiI	CCGC	2 cut(s)	52, 244
SspI	AATATT	1 cut(s)	275
TaaI	ACNGT	3 cut(s)	298, 393, 456
TaiI	ACGT	1 cut(s)	66
TaqI	TCGA	4 cut(s)	45, 303, 678, 749
TasI	AATT	2 cut(s)	461, 850
TatI	WGTACW	1 cut(s)	365
TauI	GCSGC	2 cut(s)	54, 246
TfiI	GAWTC	2 cut(s)	79, 430
Tru1I	TTAA	1 cut(s)	871
Tru9I	TTAA	1 cut(s)	871
TscAI	CASTG	1 cut(s)	396
TseFI	GTSAC	2 cut(s)	208, 278
TseI	GCWGC	2 cut(s)	639, 694
Tsp45I	GTSAC	2 cut(s)	208, 278
TspDTI	ATGAA	5 cut(s)	153, 176, 194, 829, 863
TspGWI	ACGGA	1 cut(s)	163
TspRI	CASTG	1 cut(s)	396
VpaK11BI	GGWCC	1 cut(s)	340
XapI	RAATTY	1 cut(s)	850
XceI	RCATGY	1 cut(s)	775
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmiI	GTMKAC	1 cut(s)	621
ZraI	GACGTC	1 cut(s)	64

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.