RchiOBHm_Chr1g0313591

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001175
Physical Location & Seq
Reverse (-)
723584 .. 724960
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54440

Sequence Viewer

Length: 1377 bp
ATGCACAGTTGTGAACTAGGTGATTCAAAGCCACAAGATGTATATGTGATGCATGAGCTACCAAATACTTTCTGGCCCTCTTCTTCAAACTTTGAAGTATTGCAGCAACTCAATGAAGATGATTGTAGGAGGTCTTGCCTCGATGATTGTAACTGTGTGGTAGCTGTTATCAGAGCTGGGAGCTGCTGGAAGAAGAAACTGCCACTCTCCAATGGAAGGCAGGACTGGAATGAGTATGGCAAGGCTCTCATCAAAATACCAAAATCTGATGCTTTTGAGAACCCTGCATCTCGAGATTCAAACACAGAAAAGAAAGATCAGAAAACTGTCATCTTAGTAGGAGCACTCCTTCTAGGTAGCTCTGTGTTTATCAACTTCCTATTGGTTGCAGCAATTGCTTTGCTTGTTTTCTACACATACCGAAAAACACTTAGGGTTATCACTAGCACATCCAGTATCATGGAAGCAAATCTACGCGCTTTTACTTACAAAGAGCTCGAAGAAGCCACAGATGGTTTCAGAGAAGAACTTGGAAGAGGGGCTTTTGGCACTGTGTATAAGGGAGTCATATCATCTCCGAGCTCAACAAACTATGTGGCAATCAAGAAGTTGGACAAGGTGGCACAAGAAGGTGAAAAGGAATTCAAAACAGAAGCAAGTGCAATAGCCAAGACCCATCACAAAAACCTCGTCAGATTGCTTGGCTTGTGTGATGAAGGGGCAAATAAACTCCTAGTCTATGAGTTTATGAGAAATGGAACACTGGCTAGCTTTCTGTTTGGGATTTCAAGGCCTGATTGGAACAAACGAATCCAAATTGCGTTTGGCATTGCAAGAGGGCTCATGTACTTGCACGATGAGTGTAGCACCCAGATCATCCACTGTGACATCAAACCGCAGAACATACTTCTCGATGATTCATTCACAGCAAGGATTTCGGATTTCGGATTGGCAAAGCTTCTGCTAAGTGATCAAACTCTGACTCATACAGTCATTAGAGGGACCAGAGGGTATGTTGCACCAGAATGGTTCAGAAATACTCCAGTTACTGCAAAGGTTGATGTTTACAGTTACGGGGTGATGCTGTTTGAGATTATCTGTTGCAGGAGGTGCCTCGAAATGGAAAGGGAAAATGAAGAAGAAAAGATACTAACTGACTGGGTTTACGATTGCTACAACCAGAGGAGATTAAACAAGATGATCGGGGACGATGAGGAGGCCAGAAATGACATGAAAAGGCTGGAGAGGCTAGTAATGGTGGCAATCTGGTGCATACAAGAGGATCCATCTTTGAGACCCACCATGAAGAAGGTTACACAAATGCTCGAAGGAGTGATTGATATATCTGTGCCTCCAAGTCCTTCTCGATCTTTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

458

Amino Acids

52.08

Weight (kDa)

6.44

Isoelectric Point (pI)

44.71

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 16 - 54 8.7e-06 PAN-like domain
PK_Tyr_Ser-Thr PF07714 173 - 442 8.1e-49 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 175 - 440 3.4e-50 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 1110
AccII CGCG 1 cut(s) 477
AciI CCGC 1 cut(s) 896
AclWI GGATC 2 cut(s) 1277, 1290
AcsI RAATTY 1 cut(s) 641
AfaI GTAC 1 cut(s) 848
AfiI CCNNNNNNNGG 2 cut(s) 216, 1120
AgsI TTSAA 6 cut(s) 27, 87, 95, 300, 646, 789
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 9 cut(s) 58, 164, 176, 183, 360, 496, 582, 771, 958
AluI AGCT 9 cut(s) 58, 164, 176, 183, 360, 496, 582, 771, 958
Alw21I GWGCWC 3 cut(s) 346, 498, 584
Alw26I GTCTC 1 cut(s) 1288
AlwI GGATC 2 cut(s) 1277, 1290
AlwNI CAGNNNCTG 1 cut(s) 1049
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 3 cut(s) 74, 791, 1218
ApeKI GCWGC 3 cut(s) 103, 183, 389
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 2 cut(s) 75, 1002
AsuHPI GGTGA 3 cut(s) 32, 644, 1090
AsuNHI GCTAGC 1 cut(s) 767
AvaI CYCGRG 1 cut(s) 291
AvaII GGWCC 1 cut(s) 1002
BamHI GGATCC 1 cut(s) 1282
BanI GGYRCC 1 cut(s) 1110
BanII GRGCYC 3 cut(s) 498, 584, 843
BarI GAAGNNNNNNTAC 4 cut(s) 456, 488, 1131, 1163
Bbv12I GWGCWC 3 cut(s) 346, 498, 584
BbvI GCAGC 3 cut(s) 115, 170, 401
BccI CCATC 3 cut(s) 506, 684, 1294
BcgI CGANNNNNNTGC 2 cut(s) 918, 952
BclI TGATCA 1 cut(s) 970
BcoDI GTCTC 1 cut(s) 1288
BfaI CTAG 6 cut(s) 17, 353, 444, 734, 768, 1250
BisI GCNGC 3 cut(s) 104, 184, 390
BlsI GCNGC 3 cut(s) 105, 185, 391
Bme18I GGWCC 1 cut(s) 1002
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 2 cut(s) 75, 1002
BmiI GGNNCC 3 cut(s) 1003, 1112, 1284
BmrI ACTGGG 1 cut(s) 1168
BmsI GCATC 4 cut(s) 39, 259, 296, 1071
BmtI GCTAGC 1 cut(s) 771
BmuI ACTGGG 1 cut(s) 1168
BpmI CTGGAG 2 cut(s) 1026, 1262
BsaI GGTCTC 1 cut(s) 1288
Bsc4I CCNNNNNNNGG 2 cut(s) 216, 1120
Bse1I ACTGG 5 cut(s) 230, 453, 768, 1043, 1163
Bse3DI GCAATG 1 cut(s) 828
BseGI GGATG 2 cut(s) 449, 876
BseLI CCNNNNNNNGG 2 cut(s) 216, 1120
BseMI GCAATG 1 cut(s) 828
BseNI ACTGG 5 cut(s) 230, 453, 768, 1043, 1163
BseRI GAGGAG 2 cut(s) 1198, 1229
BseXI GCAGC 3 cut(s) 115, 170, 401
BseYI CCCAGC 1 cut(s) 176
Bsh1236I CGCG 1 cut(s) 477
BshFI GGCC 3 cut(s) 76, 793, 1220
BshNI GGYRCC 1 cut(s) 1110
BsiHKAI GWGCWC 3 cut(s) 346, 498, 584
BsiHKCI CYCGRG 1 cut(s) 291
BslFI GGGAC 2 cut(s) 1015, 1220
BslI CCNNNNNNNGG 2 cut(s) 216, 1120
BsmAI GTCTC 1 cut(s) 1288
BsmFI GGGAC 2 cut(s) 1015, 1220
BsnI GGCC 3 cut(s) 76, 793, 1220
Bso31I GGTCTC 1 cut(s) 1288
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 4 cut(s) 346, 498, 584, 843
Bsp143I GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
BspACI CCGC 1 cut(s) 896
BspANI GGCC 3 cut(s) 76, 793, 1220
BspFNI CGCG 1 cut(s) 477
BspLI GGNNCC 3 cut(s) 1003, 1112, 1284
BspOI GCTAGC 1 cut(s) 771
BspPI GGATC 2 cut(s) 1277, 1290
BspT107I GGYRCC 1 cut(s) 1110
BspTNI GGTCTC 1 cut(s) 1288
BsrDI GCAATG 1 cut(s) 828
BsrI ACTGG 5 cut(s) 230, 453, 768, 1043, 1163
BssMI GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
Bst4CI ACNGT 7 cut(s) 8, 155, 328, 553, 884, 991, 1070
Bst6I CTCTTC 2 cut(s) 85, 529
BstAPI GCANNNNNTGC 2 cut(s) 395, 1110
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 3 cut(s) 334, 431, 965
BstF5I GGATG 2 cut(s) 449, 876
BstFNI CGCG 1 cut(s) 477
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 6 cut(s) 319, 876, 973, 1203, 1285, 1370
BstMAI GTCTC 1 cut(s) 1288
BstMBI GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
BstMWI GCNNNNNNNGC 3 cut(s) 395, 1110, 1246
BstUI CGCG 1 cut(s) 477
BstV1I GCAGC 3 cut(s) 115, 170, 401
BstX2I RGATCY 1 cut(s) 1282
BstXI CCANNNNNNTGG 1 cut(s) 460
BstYI RGATCY 1 cut(s) 1282
BsuRI GGCC 3 cut(s) 76, 793, 1220
BtsCI GGATG 2 cut(s) 449, 876
BtsIMutI CAGTG 3 cut(s) 549, 761, 880
Cac8I GCNNGC 1 cut(s) 769
CaiI CAGNNNCTG 1 cut(s) 1049
CfoI GCGC 1 cut(s) 479
Cfr13I GGNCC 2 cut(s) 75, 1002
Csp6I GTAC 1 cut(s) 847
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 5 cut(s) 53, 460, 844, 1231, 1303
CviQI GTAC 1 cut(s) 847
DdeI CTNAG 3 cut(s) 334, 431, 965
DpnI GATC 6 cut(s) 318, 875, 972, 1202, 1284, 1369
DpnII GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
Eam1104I CTCTTC 2 cut(s) 85, 529
EarI CTCTTC 2 cut(s) 85, 529
Ecl136II GAGCTC 2 cut(s) 496, 582
Eco147I AGGCCT 1 cut(s) 793
Eco24I GRGCYC 3 cut(s) 498, 584, 843
Eco31I GGTCTC 1 cut(s) 1288
Eco47I GGWCC 1 cut(s) 1002
Eco53kI GAGCTC 2 cut(s) 496, 582
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 2 cut(s) 496, 582
EcoRI GAATTC 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 3 cut(s) 498, 584, 843
FaeI CATG 5 cut(s) 56, 463, 847, 1234, 1306
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FaqI GGGAC 2 cut(s) 1015, 1220
FatI CATG 5 cut(s) 52, 459, 843, 1230, 1302
FbaI TGATCA 1 cut(s) 970
Fnu4HI GCNGC 3 cut(s) 104, 184, 390
FokI GGATG 2 cut(s) 436, 863
FriOI GRGCYC 3 cut(s) 498, 584, 843
Fsp4HI GCNGC 3 cut(s) 104, 184, 390
FspBI CTAG 6 cut(s) 17, 353, 444, 734, 768, 1250
GlaI GCGC 1 cut(s) 478
GluI GCNGC 3 cut(s) 104, 184, 390
GsaI CCCAGC 1 cut(s) 180
GsuI CTGGAG 2 cut(s) 1026, 1262
HaeIII GGCC 3 cut(s) 76, 793, 1220
HhaI GCGC 1 cut(s) 479
Hin1II CATG 5 cut(s) 56, 463, 847, 1234, 1306
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HindIII AAGCTT 1 cut(s) 956
HinfI GANTC 6 cut(s) 23, 296, 564, 810, 917, 982
HphI GGTGA 3 cut(s) 32, 644, 1090
Hpy166II GTNNAC 3 cut(s) 14, 1066, 1165
Hpy188III TCNNGA 5 cut(s) 291, 293, 604, 911, 1365
Hpy8I GTNNAC 3 cut(s) 14, 1066, 1165
HpyAV CCTTC 7 cut(s) 210, 359, 623, 710, 1303, 1322, 1371
HpyCH4III ACNGT 7 cut(s) 8, 155, 328, 553, 884, 991, 1070
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 1110, 1246
HpyF3I CTNAG 3 cut(s) 334, 431, 965
Hsp92II CATG 5 cut(s) 56, 463, 847, 1234, 1306
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 970
Kzo9I GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
LmnI GCTCC 2 cut(s) 180, 341
Lsp1109I GCAGC 3 cut(s) 115, 170, 401
LweI GCATC 4 cut(s) 39, 259, 296, 1071
MaeI CTAG 6 cut(s) 17, 353, 444, 734, 768, 1250
MaeIII GTNAC 5 cut(s) 149, 884, 1045, 1070, 1312
MalI GATC 6 cut(s) 318, 875, 972, 1202, 1284, 1369
MboI GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
MfeI CAATTG 1 cut(s) 393
MflI RGATCY 1 cut(s) 1282
MhlI GDGCHC 4 cut(s) 346, 498, 584, 843
MluCI AATT 3 cut(s) 393, 641, 816
MlyI GAGTC 2 cut(s) 573, 976
MmeI TCCRAC 1 cut(s) 591
Mph1103I ATGCAT 1 cut(s) 54
MseI TTAA 1 cut(s) 1190
MslI CAYNNNNRTG 2 cut(s) 9, 1024
MunI CAATTG 1 cut(s) 393
MvnI CGCG 1 cut(s) 477
MwoI GCNNNNNNNGC 3 cut(s) 395, 1110, 1246
NdeII GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 5 cut(s) 56, 463, 847, 1234, 1306
NlaIV GGNNCC 3 cut(s) 1003, 1112, 1284
NmuCI GTSAC 1 cut(s) 884
NsiI ATGCAT 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 291
PceI AGGCCT 1 cut(s) 793
PfeI GAWTC 4 cut(s) 23, 296, 810, 917
PkrI GCNGC 3 cut(s) 105, 185, 391
PleI GAGTC 2 cut(s) 572, 976
PpsI GAGTC 2 cut(s) 572, 976
Psp124BI GAGCTC 2 cut(s) 498, 584
PspFI CCCAGC 1 cut(s) 176
PspN4I GGNNCC 3 cut(s) 1003, 1112, 1284
PspPI GGNCC 2 cut(s) 75, 1002
PstNI CAGNNNCTG 1 cut(s) 1049
PsuI RGATCY 1 cut(s) 1282
RsaI GTAC 1 cut(s) 848
RsaNI GTAC 1 cut(s) 847
RseI CAYNNNNRTG 2 cut(s) 9, 1024
SacI GAGCTC 2 cut(s) 498, 584
SaqAI TTAA 1 cut(s) 1190
SatI GCNGC 3 cut(s) 104, 184, 390
Sau3AI GATC 6 cut(s) 316, 873, 970, 1200, 1282, 1367
Sau96I GGNCC 2 cut(s) 75, 1002
SchI GAGTC 2 cut(s) 573, 976
SduI GDGCHC 4 cut(s) 346, 498, 584, 843
SfaNI GCATC 4 cut(s) 39, 259, 296, 1071
Sfr274I CTCGAG 1 cut(s) 291
SinI GGWCC 1 cut(s) 1002
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 2 cut(s) 9, 1024
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 3 cut(s) 393, 641, 816
SseBI AGGCCT 1 cut(s) 793
SsiI CCGC 1 cut(s) 896
SspMI CTAG 6 cut(s) 17, 353, 444, 734, 768, 1250
SstI GAGCTC 2 cut(s) 498, 584
StuI AGGCCT 1 cut(s) 793
TaaI ACNGT 7 cut(s) 8, 155, 328, 553, 884, 991, 1070
TaqI TCGA 7 cut(s) 141, 292, 498, 912, 1116, 1326, 1366
TasI AATT 3 cut(s) 393, 641, 816
TatI WGTACW 1 cut(s) 846
TfiI GAWTC 4 cut(s) 23, 296, 810, 917
Tru1I TTAA 1 cut(s) 1190
Tru9I TTAA 1 cut(s) 1190
TscAI CASTG 3 cut(s) 556, 768, 887
TseFI GTSAC 1 cut(s) 884
TseI GCWGC 3 cut(s) 103, 183, 389
Tsp45I GTSAC 1 cut(s) 884
TspDTI ATGAA 6 cut(s) 129, 729, 909, 1149, 1247, 1319
TspRI CASTG 3 cut(s) 556, 768, 887
VpaK11BI GGWCC 1 cut(s) 1002
XapI RAATTY 1 cut(s) 641
XcmI CCANNNNNNNNNTGG 2 cut(s) 69, 821
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 6 cut(s) 17, 353, 444, 734, 768, 1250
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.