Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

548461 .. 552909

Gene Structure 4449 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2049 bp

ATGTGGAGGTTCAAGCCTTTTATGCACAAGGAGCCAGCTGGCCTCGAAGGCCGCTCCATTGACGTCGGAACTCTCAAGATTCAGGTGAAGAATGTCATTGCCGAAGGAGGGTTCTCTTGCGTTTACTTAGCTCGGGACCTTGTCCATACCTCAAAGCAGTATGCTTTGAAGCACATCATTTGTAATGATGAAGAGTTGCTGGAGTTGGTGATGAAGGAAATCTCCGTCATGAAGTTACTCAGAGGGCATCCCAATGTTGTCACTCTCTATGCCCACGCCGTCATGGATTTGGGCCGCACAAAGGAGGCACTCCTTGTGATGGAATATTGTGACAAGTCTCTGGTTACCGTACTCGATAGCAGAGGAGCTGGCTTTTTTGATGAGAAGCAGGTCCTTGCAATCTTCAGAGATGTGTGTACTGCAGTTTTTGCGATGCACACACTGTCCCCTCCCATTGCTCATAGGGATTTGAAAGCTGAGAATCTTCTGTTGGGGCCAGATGGACTGTGGAAATTGTGTGATTTTGGAAGCACCTCTACCAACCACAAGCGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACATTATCAGAAAGCACACAACACCTGCCTACAGGGCCCCTGAGATGTGGGATCTATTTCGGAGAGAACTTATCAATGAGAAAGTAGACATATGGGCTCTTGGCTGCCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTCGATGGAGAGTCAAAGCTGCAGATCTTGAATGGAAACTATCGCATTCCTGAGTTACCTAACTACGGCTCGTCAATTACAGATCTCATCAGAGACATGCTTCAGGCATCACCAGACGACAGACCAGATATCACGCAGGTGTGGTTTCGTGTTAATGAGCTGTTACCAGTTGGTTTACAGAAGTCTTTACCTGATAGGCCACCCGAAATGCACTCTGCTGGAAAACATGAAGGTTTTTCAAGGCCCGCAAACAAGTCGCCTGAAATGCCTCGTAGAAGCCCACCCCCACCACCTTCAGTGGGAGAATCAGCTAGAAATCCATCACAAACGTCAAATATGTCCAAGGCAGGGGGAGGTGGAGGGCCACTTGGTGCATTTTGGTCCACTCAGCATGCTGAGGATTCAGTTGTTGTTGAAGAAAAGACTGCACCTAAGTTTGATGATTCTAATCATCCTTTACCCAAGAACAGTGCCCCTGCAAAAGTGGAAAATACACCAACCTATGCTGCACGAAGAAACTCACACGTGAAATCGCACAAGCATGAAGATGGAATTCCAAAGGACATTGAAATAAATTTCTTCCAGAAGCATACTGACCATGGTGCTGAGAGGCCAAAGGCATCCAAGCCTGAGAGTGCAACTAGTTTTCACGATGATGCATTTAACTCATTTGTTGCTGAATTTGATACTAATAAACTCAGCGTGGGAGCTAGTAATAGCAAATCAGGAAAAGAAGAAGCATTAGAGACTGAAGTAGAGAGATTGAAGGAGCAGCTGAACCAAGCCAACATAGAAAAGGCTGAAATAACTTCCAAATTTGAAAAGCTATCAGCCATCTGCCGATCTCAAAGGCAAGAGTTGCAGGAGCTTAAGCAGACGCTTGCCGCTAGAACACCTTCACCGAATAAAGATGCTTTGAGAAATCAAATGTCACCTGGCATTCAATCATCCGCAACCCCACCGCAGAGGGAGAAGATAGAAGGAGCCATTTGGGAACTCCAGCAGGATAAATCTGACCGGAAAACTCCGAGTCCAGAGACAAAGTCATGGCAGCCGTTTGCAGAACCGCAGCCTTCTTCAACGGACAACACTGTCAAATCTGTCAGGACAAGAAATGGTCACCAGAACAAGCAAGCTACGACTCAAGTAAATACTGGTTTTGACTCGTGGGGTTTTGGAACAGAGAGCTTTTCTGCTGCGCCCACTGGAAGCACCCAAATATCAAGACCTATGGGTGAAGGAAATATTTCTCAGCGTTTTGGTGACACAAAGGCTATGGAGAGCAAGCCAGCTTCTCAACCTGCTGGATGGGCTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

682

Amino Acids

75.98

Weight (kDa)

6.72

Isoelectric Point (pI)

53.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	27 - 289	1.6e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	28 - 289	1.5e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	619, 853
AasI	GACNNNNNNGTC	1 cut(s)	1817
AatII	GACGTC	1 cut(s)	66
Acc36I	ACCTGC	4 cut(s)	379, 619, 853, 2035
AccBSI	CCGCTC	1 cut(s)	54
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	7 cut(s)	52, 295, 972, 1611, 1677, 1688, 1793
AclWI	GGATC	1 cut(s)	645
AcsI	RAATTY	4 cut(s)	1278, 1300, 1406, 1541
AcuI	CTGAAG	5 cut(s)	388, 585, 812, 1005, 1497
AcvI	CACGTG	1 cut(s)	1252
AcyI	GRCGYC	1 cut(s)	63
AdeI	CACNNNGTG	1 cut(s)	1097
AfaI	GTAC	2 cut(s)	351, 418
AfeI	AGCGCT	1 cut(s)	551
AfiI	CCNNNNNNNGG	6 cut(s)	108, 301, 319, 791, 1025, 1074
AflII	CTTAAG	1 cut(s)	1595
AflIII	ACRYGT	1 cut(s)	1249
AhlI	ACTAGT	1 cut(s)	1367
AjnI	CCWGG	1 cut(s)	1660
AjuI	GAANNNNNNNTTGG	2 cut(s)	473, 505
AleI	CACNNNNGTG	1 cut(s)	863
Alw26I	GTCTC	4 cut(s)	342, 813, 1466, 1757
AlwI	GGATC	1 cut(s)	645
Ama87I	CYCGRG	1 cut(s)	132
Aor51HI	AGCGCT	1 cut(s)	551
AoxI	GGCC	9 cut(s)	40, 49, 292, 494, 621, 923, 968, 1088, 1337
ApaI	GGGCCC	1 cut(s)	625
ApeKI	GCWGC	7 cut(s)	690, 745, 1232, 1498, 1777, 1795, 1922
ApoI	RAATTY	4 cut(s)	1278, 1300, 1406, 1541
Asp700I	GAANNNNTTC	2 cut(s)	1621, 1972
AspLEI	GCGC	2 cut(s)	552, 1927
AspS9I	GGNCC	9 cut(s)	136, 292, 391, 494, 621, 622, 969, 1088, 1107
AsuHPI	GGTGA	8 cut(s)	97, 220, 828, 1617, 1650, 1838, 1973, 2000
AvaI	CYCGRG	1 cut(s)	132
AvaII	GGWCC	3 cut(s)	136, 391, 1107
BaeGI	GKGCMC	2 cut(s)	625, 1201
BanII	GRGCYC	2 cut(s)	625, 685
BarI	GAAGNNNNNNTAC	2 cut(s)	520, 552
BauI	CACGAG	1 cut(s)	1891
BbrPI	CACGTG	1 cut(s)	1252
BbsI	GAAGAC	1 cut(s)	591
BbvCI	CCTCAGC	1 cut(s)	1122
BbvI	GCAGC	7 cut(s)	677, 732, 1219, 1510, 1789, 1807, 1909
BccI	CCATC	7 cut(s)	313, 494, 725, 1054, 1268, 1568, 2028
BceAI	ACGGC	3 cut(s)	263, 808, 1765
BcgI	CGANNNNNNTGC	2 cut(s)	963, 997
BciT130I	CCWGG	1 cut(s)	1662
BcoDI	GTCTC	4 cut(s)	342, 813, 1466, 1757
BcuI	ACTAGT	1 cut(s)	1367
BfaI	CTAG	4 cut(s)	1038, 1368, 1437, 1614
BfmI	CTRYAG	3 cut(s)	420, 616, 746
BfoI	RGCGCY	1 cut(s)	553
BfrI	CTTAAG	1 cut(s)	1595
BfuAI	ACCTGC	4 cut(s)	379, 619, 853, 2035
BglI	GCCNNNNNGGC	2 cut(s)	48, 620
BglII	AGATCT	2 cut(s)	750, 808
Bme1390I	CCNGG	1 cut(s)	1662
Bme18I	GGWCC	3 cut(s)	136, 391, 1107
BmeT110I	CYCGRG	1 cut(s)	132
BmgT120I	GGNCC	9 cut(s)	136, 292, 391, 494, 621, 622, 969, 1088, 1107
BmiI	GGNNCC	6 cut(s)	33, 137, 495, 623, 624, 1711
BmrFI	CCNGG	1 cut(s)	1662
BmsI	GCATC	6 cut(s)	256, 423, 842, 1355, 1372, 1627
BpiI	GAAGAC	1 cut(s)	591
BpmI	CTGGAG	2 cut(s)	221, 1709
Bpu10I	CCTNAGC	1 cut(s)	1122
BpuEI	CTTGAG	2 cut(s)	59, 1854
BsaAI	YACGTR	1 cut(s)	1252
BsaBI	GATNNNNATC	1 cut(s)	1173
BsaHI	GRCGYC	1 cut(s)	63
BsaJI	CCNNGG	2 cut(s)	1068, 1324
BsaWI	WCCGGW	1 cut(s)	1743
Bsc4I	CCNNNNNNNGG	6 cut(s)	108, 301, 319, 791, 1025, 1074
Bse1I	ACTGG	3 cut(s)	893, 1885, 1936
Bse3DI	GCAATG	2 cut(s)	96, 453
Bse8I	GATNNNNATC	1 cut(s)	1173
BseBI	CCWGG	1 cut(s)	1662
BseDI	CCNNGG	2 cut(s)	1068, 1324
BseGI	GGATG	5 cut(s)	247, 1177, 1346, 1673, 2039
BseJI	GATNNNNATC	1 cut(s)	1173
BseLI	CCNNNNNNNGG	6 cut(s)	108, 301, 319, 791, 1025, 1074
BseMI	GCAATG	2 cut(s)	96, 453
BseNI	ACTGG	3 cut(s)	893, 1885, 1936
BseRI	GAGGAG	1 cut(s)	378
BseSI	GKGCMC	2 cut(s)	625, 1201
BseXI	GCAGC	7 cut(s)	677, 732, 1219, 1510, 1789, 1807, 1909
BsgI	GTGCAG	2 cut(s)	1137, 1218
BshFI	GGCC	9 cut(s)	42, 51, 294, 496, 623, 925, 970, 1090, 1339
BsiHKCI	CYCGRG	1 cut(s)	132
BsiSI	CCGG	1 cut(s)	1744
BslFI	GGGAC	2 cut(s)	149, 430
BslI	CCNNNNNNNGG	6 cut(s)	108, 301, 319, 791, 1025, 1074
BsmAI	GTCTC	4 cut(s)	342, 813, 1466, 1757
BsmFI	GGGAC	2 cut(s)	149, 430
BsmI	GAATGC	3 cut(s)	725, 771, 1665
BsnI	GGCC	9 cut(s)	42, 51, 294, 496, 623, 925, 970, 1090, 1339
BsoBI	CYCGRG	1 cut(s)	132
Bsp120I	GGGCCC	1 cut(s)	621
Bsp1286I	GDGCHC	3 cut(s)	625, 685, 1201
Bsp143I	GATC	4 cut(s)	637, 750, 808, 1568
Bsp19I	CCATGG	1 cut(s)	1324
BspACI	CCGC	7 cut(s)	52, 295, 972, 1611, 1677, 1688, 1793
BspANI	GGCC	9 cut(s)	42, 51, 294, 496, 623, 925, 970, 1090, 1339
BspHI	TCATGA	1 cut(s)	228
BspLI	GGNNCC	6 cut(s)	33, 137, 495, 623, 624, 1711
BspMAI	CTGCAG	2 cut(s)	424, 750
BspMI	ACCTGC	4 cut(s)	379, 619, 853, 2035
BspPI	GGATC	1 cut(s)	645
BspTI	CTTAAG	1 cut(s)	1595
BsrBI	CCGCTC	1 cut(s)	54
BsrDI	GCAATG	2 cut(s)	96, 453
BsrI	ACTGG	3 cut(s)	893, 1885, 1936
BssECI	CCNNGG	2 cut(s)	1068, 1324
BssMI	GATC	4 cut(s)	637, 750, 808, 1568
BssNI	GRCGYC	1 cut(s)	63
BssSI	CACGAG	1 cut(s)	1891
BssT1I	CCWWGG	2 cut(s)	1068, 1324
Bst2BI	CACGAG	1 cut(s)	1891
Bst2UI	CCWGG	1 cut(s)	1662
Bst4CI	ACNGT	5 cut(s)	349, 444, 507, 1196, 1819
Bst6I	CTCTTC	1 cut(s)	186
BstACI	GRCGYC	1 cut(s)	63
BstAFI	CTTAAG	1 cut(s)	1595
BstAPI	GCANNNNNTGC	2 cut(s)	428, 1585
BstBAI	YACGTR	1 cut(s)	1252
BstC8I	GCNNGC	9 cut(s)	36, 40, 370, 972, 1119, 1608, 1860, 2012, 2016
BstDSI	CCRYGG	1 cut(s)	1324
BstEII	GGTNACC	2 cut(s)	343, 1844
BstF5I	GGATG	5 cut(s)	247, 1177, 1346, 1673, 2039
BstH2I	RGCGCY	1 cut(s)	553
BstHHI	GCGC	2 cut(s)	552, 1927
BstKTI	GATC	4 cut(s)	640, 753, 811, 1571
BstMAI	GTCTC	4 cut(s)	342, 813, 1466, 1757
BstMBI	GATC	4 cut(s)	637, 750, 808, 1568
BstMWI	GCNNNNNNNGC	8 cut(s)	22, 31, 48, 428, 620, 991, 1585, 2036
BstNI	CCWGG	1 cut(s)	1662
BstNSI	RCATGY	2 cut(s)	826, 1121
BstPI	GGTNACC	2 cut(s)	343, 1844
BstSCI	CCNGG	1 cut(s)	1660
BstSFI	CTRYAG	3 cut(s)	420, 616, 746
BstSLI	GKGCMC	2 cut(s)	625, 1201
BstV1I	GCAGC	7 cut(s)	677, 732, 1219, 1510, 1789, 1807, 1909
BstV2I	GAAGAC	1 cut(s)	591
BstX2I	RGATCY	3 cut(s)	637, 750, 808
BstYI	RGATCY	3 cut(s)	637, 750, 808
BsuRI	GGCC	9 cut(s)	42, 51, 294, 496, 623, 925, 970, 1090, 1339
BtgI	CCRYGG	1 cut(s)	1324
BtgZI	GCGATG	1 cut(s)	446
BtsCI	GGATG	5 cut(s)	247, 1177, 1346, 1673, 2039
BtsIMutI	CAGTG	5 cut(s)	440, 1029, 1201, 1815, 1929
BveI	ACCTGC	4 cut(s)	379, 619, 853, 2035
Cac8I	GCNNGC	9 cut(s)	36, 40, 370, 972, 1119, 1608, 1860, 2012, 2016
CciI	TCATGA	1 cut(s)	228
CfoI	GCGC	2 cut(s)	552, 1927
Cfr13I	GGNCC	9 cut(s)	136, 292, 391, 494, 621, 622, 969, 1088, 1107
CseI	GACGC	1 cut(s)	1612
Csp6I	GTAC	2 cut(s)	350, 417
CviAII	CATG	8 cut(s)	229, 283, 823, 953, 1118, 1268, 1325, 1773
CviQI	GTAC	2 cut(s)	350, 417
DpnI	GATC	4 cut(s)	639, 752, 810, 1570
DpnII	GATC	4 cut(s)	637, 750, 808, 1568
DraIII	CACNNNGTG	1 cut(s)	1097
DrdI	GACNNNNNNGTC	1 cut(s)	1817
DseDI	GACNNNNNNGTC	1 cut(s)	1817
Eam1104I	CTCTTC	1 cut(s)	186
EarI	CTCTTC	1 cut(s)	186
Eco130I	CCWWGG	2 cut(s)	1068, 1324
Eco24I	GRGCYC	2 cut(s)	625, 685
Eco32I	GATATC	1 cut(s)	856
Eco47I	GGWCC	3 cut(s)	136, 391, 1107
Eco47III	AGCGCT	1 cut(s)	551
Eco57I	CTGAAG	5 cut(s)	388, 585, 812, 1005, 1497
Eco72I	CACGTG	1 cut(s)	1252
Eco88I	CYCGRG	1 cut(s)	132
Eco91I	GGTNACC	2 cut(s)	343, 1844
EcoO109I	RGGNCCY	4 cut(s)	136, 391, 621, 622
EcoO65I	GGTNACC	2 cut(s)	343, 1844
EcoRI	GAATTC	1 cut(s)	1278
EcoRII	CCWGG	1 cut(s)	1660
EcoRV	GATATC	1 cut(s)	856
EcoT14I	CCWWGG	2 cut(s)	1068, 1324
EcoT22I	ATGCAT	1 cut(s)	1387
EcoT38I	GRGCYC	2 cut(s)	625, 685
ErhI	CCWWGG	2 cut(s)	1068, 1324
FaeI	CATG	8 cut(s)	232, 286, 826, 956, 1121, 1271, 1328, 1776
FaqI	GGGAC	2 cut(s)	149, 430
FatI	CATG	8 cut(s)	228, 282, 822, 952, 1117, 1267, 1324, 1772
FauI	CCCGC	1 cut(s)	979
FauNDI	CATATG	1 cut(s)	677
FblI	GTMKAC	1 cut(s)	672
FokI	GGATG	4 cut(s)	234, 1164, 1333, 1660
FriOI	GRGCYC	2 cut(s)	625, 685
FspBI	CTAG	4 cut(s)	1038, 1368, 1437, 1614
GlaI	GCGC	2 cut(s)	551, 1926
GsuI	CTGGAG	2 cut(s)	221, 1709
HaeII	RGCGCY	1 cut(s)	553
HaeIII	GGCC	9 cut(s)	42, 51, 294, 496, 623, 925, 970, 1090, 1339
HapII	CCGG	1 cut(s)	1744
HgaI	GACGC	1 cut(s)	1612
HhaI	GCGC	2 cut(s)	552, 1927
Hin1I	GRCGYC	1 cut(s)	63
Hin1II	CATG	8 cut(s)	232, 286, 826, 956, 1121, 1271, 1328, 1776
Hin6I	GCGC	2 cut(s)	550, 1925
HinP1I	GCGC	2 cut(s)	550, 1925
HinfI	GANTC	9 cut(s)	79, 481, 737, 1031, 1127, 1169, 1756, 1867, 1889
HpaII	CCGG	1 cut(s)	1744
HphI	GGTGA	8 cut(s)	97, 220, 828, 1617, 1650, 1838, 1973, 2000
Hpy166II	GTNNAC	5 cut(s)	124, 417, 673, 902, 1110
Hpy188I	TCNGA	8 cut(s)	68, 242, 407, 596, 648, 818, 1741, 1755
Hpy8I	GTNNAC	5 cut(s)	124, 417, 673, 902, 1110
Hpy99I	CGWCG	1 cut(s)	68
HpyCH4III	ACNGT	5 cut(s)	349, 444, 507, 1196, 1819
HpyCH4IV	ACGT	3 cut(s)	63, 1055, 1251
HpyF10VI	GCNNNNNNNGC	8 cut(s)	22, 31, 48, 428, 620, 991, 1585, 2036
HpySE526I	ACGT	3 cut(s)	63, 1055, 1251
Hsp92I	GRCGYC	1 cut(s)	63
Hsp92II	CATG	8 cut(s)	232, 286, 826, 956, 1121, 1271, 1328, 1776
HspAI	GCGC	2 cut(s)	550, 1925
Kzo9I	GATC	4 cut(s)	637, 750, 808, 1568
LmnI	GCTCC	7 cut(s)	31, 59, 365, 1433, 1495, 1591, 1709
Lsp1109I	GCAGC	7 cut(s)	677, 732, 1219, 1510, 1789, 1807, 1909
LweI	GCATC	6 cut(s)	256, 423, 842, 1355, 1372, 1627
MaeI	CTAG	4 cut(s)	1038, 1368, 1437, 1614
MaeII	ACGT	3 cut(s)	63, 1055, 1251
MaeIII	GTNAC	9 cut(s)	234, 259, 329, 343, 780, 888, 1656, 1844, 1988
MalI	GATC	4 cut(s)	639, 752, 810, 1570
MbiI	CCGCTC	1 cut(s)	54
MboI	GATC	4 cut(s)	637, 750, 808, 1568
MflI	RGATCY	3 cut(s)	637, 750, 808
MhlI	GDGCHC	3 cut(s)	625, 685, 1201
MluCI	AATT	6 cut(s)	512, 801, 1278, 1300, 1406, 1541
MlyI	GAGTC	4 cut(s)	746, 1765, 1861, 1883
MmeI	TCCRAC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	1387
MroXI	GAANNNNTTC	2 cut(s)	1621, 1972
MseI	TTAA	3 cut(s)	879, 1389, 1596
MslI	CAYNNNNRTG	5 cut(s)	252, 863, 1266, 1272, 1380
MspA1I	CMGCKG	2 cut(s)	38, 1501
MspCI	CTTAAG	1 cut(s)	1595
MspI	CCGG	1 cut(s)	1744
MspR9I	CCNGG	1 cut(s)	1662
Mva1269I	GAATGC	3 cut(s)	725, 771, 1665
MvaI	CCWGG	1 cut(s)	1662
MwoI	GCNNNNNNNGC	8 cut(s)	22, 31, 48, 428, 620, 991, 1585, 2036
NcoI	CCATGG	1 cut(s)	1324
NdeI	CATATG	1 cut(s)	677
NdeII	GATC	4 cut(s)	637, 750, 808, 1568
NlaIII	CATG	8 cut(s)	232, 286, 826, 956, 1121, 1271, 1328, 1776
NlaIV	GGNNCC	6 cut(s)	33, 137, 495, 623, 624, 1711
NmuCI	GTSAC	5 cut(s)	259, 329, 1656, 1844, 1988
NsiI	ATGCAT	1 cut(s)	1387
NspI	RCATGY	2 cut(s)	826, 1121
OliI	CACNNNNGTG	1 cut(s)	863
PaeI	GCATGC	1 cut(s)	1121
PagI	TCATGA	1 cut(s)	228
PaqCI	CACCTGC	2 cut(s)	619, 853
PctI	GAATGC	3 cut(s)	725, 771, 1665
PdmI	GAANNNNTTC	2 cut(s)	1621, 1972
PfeI	GAWTC	5 cut(s)	79, 481, 1031, 1127, 1169
PflFI	GACNNNGTC	2 cut(s)	140, 1768
PleI	GAGTC	4 cut(s)	745, 1764, 1861, 1883
PmaCI	CACGTG	1 cut(s)	1252
PmlI	CACGTG	1 cut(s)	1252
PpsI	GAGTC	4 cut(s)	745, 1764, 1861, 1883
Ppu21I	YACGTR	1 cut(s)	1252
PpuMI	RGGWCCY	2 cut(s)	136, 391
Psp5II	RGGWCCY	2 cut(s)	136, 391
Psp6I	CCWGG	1 cut(s)	1660
PspCI	CACGTG	1 cut(s)	1252
PspEI	GGTNACC	2 cut(s)	343, 1844
PspGI	CCWGG	1 cut(s)	1660
PspN4I	GGNNCC	6 cut(s)	33, 137, 495, 623, 624, 1711
PspOMI	GGGCCC	1 cut(s)	621
PspPI	GGNCC	9 cut(s)	136, 292, 391, 494, 621, 622, 969, 1088, 1107
PspPPI	RGGWCCY	2 cut(s)	136, 391
PstI	CTGCAG	2 cut(s)	424, 750
PsuI	RGATCY	3 cut(s)	637, 750, 808
PsyI	GACNNNGTC	2 cut(s)	140, 1768
PvuII	CAGCTG	2 cut(s)	38, 1501
RsaI	GTAC	2 cut(s)	351, 418
RsaNI	GTAC	2 cut(s)	350, 417
RseI	CAYNNNNRTG	5 cut(s)	252, 863, 1266, 1272, 1380
SaqAI	TTAA	3 cut(s)	879, 1389, 1596
Sau3AI	GATC	4 cut(s)	637, 750, 808, 1568
Sau96I	GGNCC	9 cut(s)	136, 292, 391, 494, 621, 622, 969, 1088, 1107
SchI	GAGTC	4 cut(s)	746, 1765, 1861, 1883
ScrFI	CCNGG	1 cut(s)	1662
SduI	GDGCHC	3 cut(s)	625, 685, 1201
SfaNI	GCATC	6 cut(s)	256, 423, 842, 1355, 1372, 1627
SfcI	CTRYAG	3 cut(s)	420, 616, 746
SfiI	GGCCNNNNNGGCC	1 cut(s)	48
SinI	GGWCC	3 cut(s)	136, 391, 1107
SmiMI	CAYNNNNRTG	5 cut(s)	252, 863, 1266, 1272, 1380
SmlI	CTYRAG	3 cut(s)	74, 1595, 1869
SmoI	CTYRAG	3 cut(s)	74, 1595, 1869
SpeI	ACTAGT	1 cut(s)	1367
SphI	GCATGC	1 cut(s)	1121
Sse9I	AATT	6 cut(s)	512, 801, 1278, 1300, 1406, 1541
SsiI	CCGC	7 cut(s)	52, 295, 972, 1611, 1677, 1688, 1793
SspI	AATATT	2 cut(s)	326, 1972
SspMI	CTAG	4 cut(s)	1038, 1368, 1437, 1614
StyD4I	CCNGG	1 cut(s)	1660
StyI	CCWWGG	2 cut(s)	1068, 1324
TaaI	ACNGT	5 cut(s)	349, 444, 507, 1196, 1819
TaiI	ACGT	3 cut(s)	66, 1058, 1254
TaqI	TCGA	3 cut(s)	45, 354, 729
TasI	AATT	6 cut(s)	512, 801, 1278, 1300, 1406, 1541
TatI	WGTACW	1 cut(s)	416
TauI	GCSGC	3 cut(s)	54, 297, 1613
TfiI	GAWTC	5 cut(s)	79, 481, 1031, 1127, 1169
Tru1I	TTAA	3 cut(s)	879, 1389, 1596
Tru9I	TTAA	3 cut(s)	879, 1389, 1596
TscAI	CASTG	5 cut(s)	447, 1029, 1201, 1822, 1936
TseFI	GTSAC	5 cut(s)	259, 329, 1656, 1844, 1988
TseI	GCWGC	7 cut(s)	690, 745, 1232, 1498, 1777, 1795, 1922
Tsp45I	GTSAC	5 cut(s)	259, 329, 1656, 1844, 1988
TspDTI	ATGAA	5 cut(s)	204, 227, 245, 969, 1284
TspGWI	ACGGA	2 cut(s)	214, 1823
TspRI	CASTG	5 cut(s)	447, 1029, 1201, 1822, 1936
Tth111I	GACNNNGTC	2 cut(s)	140, 1768
Vha464I	CTTAAG	1 cut(s)	1595
VpaK11BI	GGWCC	3 cut(s)	136, 391, 1107
XapI	RAATTY	4 cut(s)	1278, 1300, 1406, 1541
XceI	RCATGY	2 cut(s)	826, 1121
XcmI	CCANNNNNNNNNTGG	1 cut(s)	504
XmiI	GTMKAC	1 cut(s)	672
XmnI	GAANNNNTTC	2 cut(s)	1621, 1972
XspI	CTAG	4 cut(s)	1038, 1368, 1437, 1614
ZraI	GACGTC	1 cut(s)	64
Zsp2I	ATGCAT	1 cut(s)	1387

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.