Rh1DG003700

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0001175
Physical Location & Seq
Reverse (-)
532451 .. 547060
14610 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG003700.1

Sequence Viewer

Length: 1197 bp
ATGGACTTCTCGGTTCTCCACTTACTTGGCCTATTCCTTGTCATTGAACCATTTTTTGTAGCTGCTGCTCAAACTGCAAATATTAGCTTGGGGTCGTCTCTCACTGCATCAGACAACTCTCTTTCGTGGCAATCTCCCTCCGGGGCATTTGCTTTTGGATTTCGCCGCATTGGTGATCAAGAACTCTTCTTGCTTGCCATATGGTATGACAAGATACCAGAAAAGACTCTTGTGTGGTATGCAAATGGAGACAATCCAGCACCAAAAGGATCCAAAGTGGAGCTCACAAAGGACGGTCTCTTCAGACTCACTGGCCCTCGGAGAGAAGAAATCTGGCCCCAGCCTGTTATTAATGGAGTTGCTTATGCTGCCATGCTTGACAAAGGTAACTTTGTTCTTGCAAACCAGAATTCAGTACCTTTATGGCAAAGCTTCAAAAACCCTACAGACACCATTTTACCAACCCAAGTGTTGGAAATTGGCGAAAAGCTATCTTCTCGGCAGACTGCTAGCAACTACTCAAAGGGGAAGTTTCAACTCCAATTTAAACCAGCAGGTACGCTTGAGCTGTATCTCATAGCGTTGCCTACAGAGCAAGCATATTCAGCATACTACAAAAGCAATACATCTGATGCAGCTGATAAAATGAACTCCGGCAATCAGCTAGTCTTCAATGAGCCAGCTGTTATCAAAGCTGGGACCTGCTGGAAGAAGAAATTGCCACTCTCCAATGGAAGGCAGGACTGGAATGAGTATGGCAAGGCTCTCATCAAATTACCAAAATCTGATGCTTTTGAGAATCCTGCATCTCGAGATTCAAACACAGAAAAGAAAGATCAGAAAACTGTCATCTTATTCAAGTTTGCCTCCGGACAAATTCAAGTTCGCCACATGTGTCGTGACCCGCGTTCCGGATCGCACGTACCAAAACGCGGTACATCCACGATCGAGATCGTTAAACCCAGCGATCCAAACATCTCTGCCTTCTACTTCATATCAGCAACTCAACATCTTCTTTTCTTCGTCCTCTTCAAGGCGATGGGAAGCCTCTGTTCTTCTACAACCCAACATTTCCACTTCATTCACCTTCGCAGTTCATTCCTTTCTTTGGTATGTTCGGCGGAATTTTTATATTTTTTTGTTTTACTGGTGTTCTGCAGCGGTGAAGTTTTAGATGAAGACCACATATTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

398

Amino Acids

44.44

Weight (kDa)

8.63

Isoelectric Point (pI)

39.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 165 2.4e-14 D-mannose binding lectin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 545, 710
AccB7I CCANNNNNTGG 1 cut(s) 472
AccII CGCG 2 cut(s) 907, 933
AccIII TCCGGA 2 cut(s) 869, 911
AciI CCGC 5 cut(s) 166, 905, 933, 1121, 1161
AclWI GGATC 4 cut(s) 264, 277, 922, 962
AcsI RAATTY 3 cut(s) 409, 876, 1124
AcuI CTGAAG 1 cut(s) 286
AfaI GTAC 4 cut(s) 417, 559, 924, 937
AfiI CCNNNNNNNGG 6 cut(s) 472, 735, 911, 932, 1033, 1108
AflIII ACRYGT 1 cut(s) 891
AgsI TTSAA 8 cut(s) 47, 436, 536, 673, 819, 859, 881, 1033
Alw21I GWGCWC 1 cut(s) 285
Alw26I GTCTC 3 cut(s) 102, 243, 302
AlwI GGATC 4 cut(s) 264, 277, 922, 962
Ama87I CYCGRG 1 cut(s) 810
Aor13HI TCCGGA 2 cut(s) 869, 911
AoxI GGCC 3 cut(s) 28, 313, 335
ApeKI GCWGC 5 cut(s) 62, 65, 368, 635, 1158
ApoI RAATTY 3 cut(s) 409, 876, 1124
ArsI GACNNNNNNTTYG 1 cut(s) 1172
AseI ATTAAT 1 cut(s) 351
AspS9I GGNCC 3 cut(s) 314, 336, 699
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 185, 1076, 1175
AsuNHI GCTAGC 1 cut(s) 509
AvaI CYCGRG 1 cut(s) 810
AvaII GGWCC 1 cut(s) 699
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 1 cut(s) 285
BbsI GAAGAC 2 cut(s) 661, 1185
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 5 cut(s) 49, 52, 355, 647, 1170
BccI CCATC 1 cut(s) 1033
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 3 cut(s) 102, 243, 302
BfaI CTAG 2 cut(s) 510, 665
BfmI CTRYAG 3 cut(s) 444, 588, 1156
BfuAI ACCTGC 2 cut(s) 545, 710
BisI GCNGC 6 cut(s) 63, 66, 166, 369, 636, 1159
BlsI GCNGC 6 cut(s) 64, 67, 167, 370, 637, 1160
Bme1390I CCNGG 1 cut(s) 142
Bme18I GGWCC 1 cut(s) 699
BmeT110I CYCGRG 1 cut(s) 810
BmgT120I GGNCC 3 cut(s) 314, 336, 699
BmiI GGNNCC 3 cut(s) 271, 338, 700
BmrFI CCNGG 1 cut(s) 142
BmsI GCATC 4 cut(s) 116, 622, 778, 815
BmtI GCTAGC 1 cut(s) 513
BpiI GAAGAC 2 cut(s) 661, 1185
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 142
BsaAI YACGTR 1 cut(s) 922
BsaBI GATNNNNATC 1 cut(s) 950
BsaI GGTCTC 1 cut(s) 302
BsaJI CCNNGG 2 cut(s) 141, 317
BsaWI WCCGGW 2 cut(s) 869, 911
Bsc4I CCNNNNNNNGG 6 cut(s) 472, 735, 911, 932, 1033, 1108
Bse1I ACTGG 3 cut(s) 316, 749, 1152
Bse8I GATNNNNATC 1 cut(s) 950
BseAI TCCGGA 2 cut(s) 869, 911
BseDI CCNNGG 2 cut(s) 141, 317
BseGI GGATG 1 cut(s) 938
BseJI GATNNNNATC 1 cut(s) 950
BseLI CCNNNNNNNGG 6 cut(s) 472, 735, 911, 932, 1033, 1108
BseNI ACTGG 3 cut(s) 316, 749, 1152
BseXI GCAGC 5 cut(s) 49, 52, 355, 647, 1170
BseYI CCCAGC 3 cut(s) 339, 695, 962
Bsh1236I CGCG 2 cut(s) 907, 933
Bsh1285I CGRYCG 1 cut(s) 948
BshFI GGCC 3 cut(s) 30, 315, 337
BsiEI CGRYCG 1 cut(s) 948
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 810
BsiSI CCGG 4 cut(s) 141, 654, 870, 912
BslFI GGGAC 1 cut(s) 712
BslI CCNNNNNNNGG 6 cut(s) 472, 735, 911, 932, 1033, 1108
BsmAI GTCTC 3 cut(s) 102, 243, 302
BsmBI CGTCTC 1 cut(s) 102
BsmFI GGGAC 1 cut(s) 712
BsnI GGCC 3 cut(s) 30, 315, 337
Bso31I GGTCTC 1 cut(s) 302
BsoBI CYCGRG 1 cut(s) 810
Bsp1286I GDGCHC 1 cut(s) 285
Bsp13I TCCGGA 2 cut(s) 869, 911
Bsp143I GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
BspACI CCGC 5 cut(s) 166, 905, 933, 1121, 1161
BspANI GGCC 3 cut(s) 30, 315, 337
BspEI TCCGGA 2 cut(s) 869, 911
BspFNI CGCG 2 cut(s) 907, 933
BspLI GGNNCC 3 cut(s) 271, 338, 700
BspMAI CTGCAG 1 cut(s) 1160
BspMI ACCTGC 2 cut(s) 545, 710
BspOI GCTAGC 1 cut(s) 513
BspPI GGATC 4 cut(s) 264, 277, 922, 962
BspTNI GGTCTC 1 cut(s) 302
BsrI ACTGG 3 cut(s) 316, 749, 1152
BssECI CCNNGG 2 cut(s) 141, 317
BssMI GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
Bst4CI ACNGT 2 cut(s) 296, 847
Bst6I CTCTTC 3 cut(s) 191, 305, 1034
BstBAI YACGTR 1 cut(s) 922
BstC8I GCNNGC 4 cut(s) 195, 511, 597, 681
BstENI CCTNNNNNAGG 1 cut(s) 1031
BstF5I GGATG 1 cut(s) 938
BstFNI CGCG 2 cut(s) 907, 933
BstKTI GATC 7 cut(s) 178, 272, 838, 917, 948, 954, 970
BstMAI GTCTC 3 cut(s) 102, 243, 302
BstMBI GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
BstMCI CGRYCG 1 cut(s) 948
BstMWI GCNNNNNNNGC 4 cut(s) 74, 368, 592, 605
BstNSI RCATGY 1 cut(s) 895
BstSCI CCNGG 1 cut(s) 140
BstSFI CTRYAG 3 cut(s) 444, 588, 1156
BstUI CGCG 2 cut(s) 907, 933
BstV1I GCAGC 5 cut(s) 49, 52, 355, 647, 1170
BstV2I GAAGAC 2 cut(s) 661, 1185
BstX2I RGATCY 1 cut(s) 269
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 1 cut(s) 269
BsuRI GGCC 3 cut(s) 30, 315, 337
BtgZI GCGATG 1 cut(s) 1052
BtsCI GGATG 1 cut(s) 938
BtsI GCAGTG 1 cut(s) 102
BtsIMutI CAGTG 2 cut(s) 102, 309
BveI ACCTGC 2 cut(s) 545, 710
Cac8I GCNNGC 4 cut(s) 195, 511, 597, 681
Cfr13I GGNCC 3 cut(s) 314, 336, 699
Csp6I GTAC 4 cut(s) 416, 558, 923, 936
CviAII CATG 2 cut(s) 373, 892
CviQI GTAC 4 cut(s) 416, 558, 923, 936
DpnI GATC 7 cut(s) 177, 271, 837, 916, 947, 953, 969
DpnII GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
DraI TTTAAA 1 cut(s) 547
Eam1104I CTCTTC 3 cut(s) 191, 305, 1034
EarI CTCTTC 3 cut(s) 191, 305, 1034
EciI GGCGGA 1 cut(s) 1136
Ecl136II GAGCTC 1 cut(s) 283
Eco24I GRGCYC 1 cut(s) 285
Eco31I GGTCTC 1 cut(s) 302
Eco47I GGWCC 1 cut(s) 699
Eco53kI GAGCTC 1 cut(s) 283
Eco57I CTGAAG 1 cut(s) 286
Eco88I CYCGRG 1 cut(s) 810
EcoICRI GAGCTC 1 cut(s) 283
EcoNI CCTNNNNNAGG 1 cut(s) 1031
EcoO109I RGGNCCY 1 cut(s) 699
EcoRI GAATTC 1 cut(s) 409
EcoT38I GRGCYC 1 cut(s) 285
Esp3I CGTCTC 1 cut(s) 102
FaeI CATG 2 cut(s) 376, 895
FaqI GGGAC 1 cut(s) 712
FatI CATG 2 cut(s) 372, 891
FauI CCCGC 1 cut(s) 912
FauNDI CATATG 1 cut(s) 200
FbaI TGATCA 1 cut(s) 175
Fnu4HI GCNGC 6 cut(s) 63, 66, 166, 369, 636, 1159
FokI GGATG 1 cut(s) 925
FriOI GRGCYC 1 cut(s) 285
Fsp4HI GCNGC 6 cut(s) 63, 66, 166, 369, 636, 1159
FspBI CTAG 2 cut(s) 510, 665
GluI GCNGC 6 cut(s) 63, 66, 166, 369, 636, 1159
GsaI CCCAGC 3 cut(s) 343, 699, 966
HaeIII GGCC 3 cut(s) 30, 315, 337
HapII CCGG 4 cut(s) 141, 654, 870, 912
Hin1II CATG 2 cut(s) 376, 895
HindIII AAGCTT 1 cut(s) 430
HinfI GANTC 4 cut(s) 226, 306, 799, 815
HpaII CCGG 4 cut(s) 141, 654, 870, 912
HphI GGTGA 3 cut(s) 185, 1076, 1175
Hpy188I TCNGA 6 cut(s) 112, 305, 321, 631, 787, 840
Hpy188III TCNNGA 7 cut(s) 179, 810, 812, 870, 899, 912, 949
HpyAV CCTTC 3 cut(s) 729, 994, 1097
HpyCH4III ACNGT 2 cut(s) 296, 847
HpyCH4IV ACGT 1 cut(s) 921
HpyCH4V TGCA 7 cut(s) 77, 107, 242, 401, 635, 806, 1158
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 368, 592, 605
HpySE526I ACGT 1 cut(s) 921
Hsp92II CATG 2 cut(s) 376, 895
Kpn2I TCCGGA 2 cut(s) 869, 911
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
LmnI GCTCC 1 cut(s) 280
Lsp1109I GCAGC 5 cut(s) 49, 52, 355, 647, 1170
LweI GCATC 4 cut(s) 116, 622, 778, 815
MaeI CTAG 2 cut(s) 510, 665
MaeII ACGT 1 cut(s) 921
MaeIII GTNAC 2 cut(s) 386, 899
MalI GATC 7 cut(s) 177, 271, 837, 916, 947, 953, 969
MboI GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
MflI RGATCY 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 7 cut(s) 409, 477, 542, 716, 773, 876, 1124
MlyI GAGTC 2 cut(s) 220, 300
MmeI TCCRAC 1 cut(s) 453
MnlI CCTC 5 cut(s) 148, 327, 877, 1037, 1058
MroI TCCGGA 2 cut(s) 869, 911
MseI TTAA 3 cut(s) 351, 546, 957
MspA1I CMGCKG 3 cut(s) 638, 683, 1161
MspI CCGG 4 cut(s) 141, 654, 870, 912
MspR9I CCNGG 1 cut(s) 142
MvnI CGCG 2 cut(s) 907, 933
MwoI GCNNNNNNNGC 4 cut(s) 74, 368, 592, 605
NciI CCSGG 1 cut(s) 142
NdeI CATATG 1 cut(s) 200
NdeII GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
NheI GCTAGC 1 cut(s) 509
NlaIII CATG 2 cut(s) 376, 895
NlaIV GGNNCC 3 cut(s) 271, 338, 700
NmeAIII GCCGAG 1 cut(s) 478
NmuCI GTSAC 1 cut(s) 899
NspI RCATGY 1 cut(s) 895
PaeR7I CTCGAG 1 cut(s) 810
PciI ACATGT 1 cut(s) 891
PcsI WCGNNNNNNNCGW 1 cut(s) 904
PfeI GAWTC 2 cut(s) 799, 815
PflMI CCANNNNNTGG 1 cut(s) 472
PkrI GCNGC 6 cut(s) 64, 67, 167, 370, 637, 1160
Ple19I CGATCG 1 cut(s) 948
PleI GAGTC 2 cut(s) 220, 300
PpsI GAGTC 2 cut(s) 220, 300
Ppu21I YACGTR 1 cut(s) 922
PpuMI RGGWCCY 1 cut(s) 699
PscI ACATGT 1 cut(s) 891
PshBI ATTAAT 1 cut(s) 351
Psp124BI GAGCTC 1 cut(s) 285
Psp5II RGGWCCY 1 cut(s) 699
PspFI CCCAGC 3 cut(s) 339, 695, 962
PspN4I GGNNCC 3 cut(s) 271, 338, 700
PspPI GGNCC 3 cut(s) 314, 336, 699
PspPPI RGGWCCY 1 cut(s) 699
PstI CTGCAG 1 cut(s) 1160
PsuI RGATCY 1 cut(s) 269
PvuI CGATCG 1 cut(s) 948
PvuII CAGCTG 2 cut(s) 638, 683
RsaI GTAC 4 cut(s) 417, 559, 924, 937
RsaNI GTAC 4 cut(s) 416, 558, 923, 936
SacI GAGCTC 1 cut(s) 285
SaqAI TTAA 3 cut(s) 351, 546, 957
SatI GCNGC 6 cut(s) 63, 66, 166, 369, 636, 1159
Sau3AI GATC 7 cut(s) 175, 269, 835, 914, 945, 951, 967
Sau96I GGNCC 3 cut(s) 314, 336, 699
SchI GAGTC 2 cut(s) 220, 300
ScrFI CCNGG 1 cut(s) 142
SduI GDGCHC 1 cut(s) 285
SfaNI GCATC 4 cut(s) 116, 622, 778, 815
SfcI CTRYAG 3 cut(s) 444, 588, 1156
Sfr274I CTCGAG 1 cut(s) 810
SinI GGWCC 1 cut(s) 699
SlaI CTCGAG 1 cut(s) 810
SmlI CTYRAG 2 cut(s) 563, 810
SmoI CTYRAG 2 cut(s) 563, 810
Sse9I AATT 7 cut(s) 409, 477, 542, 716, 773, 876, 1124
SsiI CCGC 5 cut(s) 166, 905, 933, 1121, 1161
SspI AATATT 1 cut(s) 82
SspMI CTAG 2 cut(s) 510, 665
SstI GAGCTC 1 cut(s) 285
StyD4I CCNGG 1 cut(s) 140
TaaI ACNGT 2 cut(s) 296, 847
TaiI ACGT 1 cut(s) 924
TaqI TCGA 2 cut(s) 811, 948
TasI AATT 7 cut(s) 409, 477, 542, 716, 773, 876, 1124
TauI GCSGC 1 cut(s) 168
TfiI GAWTC 2 cut(s) 799, 815
Tru1I TTAA 3 cut(s) 351, 546, 957
Tru9I TTAA 3 cut(s) 351, 546, 957
TscAI CASTG 2 cut(s) 109, 316
TseFI GTSAC 1 cut(s) 899
TseI GCWGC 5 cut(s) 62, 65, 368, 635, 1158
Tsp45I GTSAC 1 cut(s) 899
TspDTI ATGAA 5 cut(s) 662, 982, 1069, 1086, 1191
TspRI CASTG 2 cut(s) 109, 316
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 1 cut(s) 699
VspI ATTAAT 1 cut(s) 351
XagI CCTNNNNNAGG 1 cut(s) 1031
XapI RAATTY 3 cut(s) 409, 876, 1124
XceI RCATGY 1 cut(s) 895
XhoI CTCGAG 1 cut(s) 810
XspI CTAG 2 cut(s) 510, 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.