RchiOBHm_Chr1g0372901

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001175
Physical Location & Seq
Forward (+)
61417454 .. 61418831
1378 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ59686

Sequence Viewer

Length: 1314 bp
ATGCACAGTTGTGAACCACAAGATGTATATGTGATGCATGATCTACCAAGTACTTTCTGGCCCACTTCTGTAAACTATGAAGTGTTGCAGGGACTCAGTGAAGATAATTGTAGCAGAAACTGCCTCGACGATTGTAACTGTGTCGTGGCTATGATATACAATGGGGGCTGCATTAAGAAGAAACTGCCACTCTCGAATGGAAGGCAAGACTGGAATATGTACGGCAAGGCGCTCATCATAGTACCAAAATCTGCTGACGCTTCTGAGAATCCTGCAGCTCGAGATTCAAACGCAGAGAAGAAAGATCAGAAAACTCTCGTCTTAGTAGGAGCACTCCTTCTAGGTAGCTCTGTGTTTCTCAACTTCCTATTTGTTGCAGCAATTGCTTTGCTTATTTTCTACACATACCGAAAAACACATGGGGTTATCACTAGCACATCAAGTATTATGGATGGAAATCTACGCGCTTTTACTTACAAAGAGCTCGAAGAAGCCACAGATGGTTTCAGAGAAGAACTTGGAAGAGGGGCTTTTGGCACTGTGTACAAGGGAATCATATCATCTCTAAGCTCAACAAACTATGTGGCAATCAAGAAGTTGGACAAGGTGGCACAACAAGGTGAAAAGGAATTCAAAGCAGAAGCGAGTGCAATAGCCAAGACCCATCACAAAAACCTCGTCAGATTGCTCGGCTTTTGTGATGAAGGGGAAAATAAACTCCTAGTCTATGAGTTTATGAGCAATGGAACACTGGCTAGCTTTCTGTTTGGGATTTCAAGGCCTGATTGGAACAAACGGATCCAAATTGCGTTTGGTATTGCCAGAGGGCTAATGTACTTACACGACGAGTGTAGCACCCAGATCATCCACTGTGATATCAAACCCCCCAACATACTTCTCGATGATTCATTTACAGCAAGGATTTCGGATTTCGGATTGGCAAAGCTTCTGCTAAGTGATCAAACTCTGACTCATACAGTCATTAGAGGGACCAGAGGTTATGGGGTGATGCTGTTGGAGATTATCTGTTGCAGAAGGAGCCTCGAAATGGAAAGGGAAAATGAAGAAGAGGTGATACTAACTGACTGGGTTTACGATTGCTACGCGCAAAGGAGATTAAACAAGATGATCGAGGACGATGAGGAGGCCAGAAATGACATGAAAAGGTTGGAGAGGCTAGTAATGGTGGCAATTTGGTGCATACAAGAGGATCCATCTTTGAGACCCACCATGAAGAAGGTTACACAAATGCTCGAAGGAGTGGTTGATGTATCTGTACCTCCAAGTCCTTCTCCTTTTAGTTCAATATGCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

437

Amino Acids

49.13

Weight (kDa)

5.63

Isoelectric Point (pI)

43.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 169 - 323 2.1e-33 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 171 - 334 2.4e-31 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 465, 1106
AclWI GGATC 4 cut(s) 793, 806, 1205, 1218
AcsI RAATTY 1 cut(s) 629
AfaI GTAC 6 cut(s) 52, 221, 243, 545, 836, 1278
AfiI CCNNNNNNNGG 1 cut(s) 1048
AgsI TTSAA 4 cut(s) 288, 634, 777, 1305
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 6 cut(s) 278, 348, 484, 570, 759, 946
AluI AGCT 6 cut(s) 278, 348, 484, 570, 759, 946
Alw21I GWGCWC 2 cut(s) 334, 486
Alw26I GTCTC 1 cut(s) 1216
AlwI GGATC 4 cut(s) 793, 806, 1205, 1218
AlwNI CAGNNNCTG 1 cut(s) 120
Ama87I CYCGRG 1 cut(s) 279
AoxI GGCC 3 cut(s) 59, 779, 1146
ApeKI GCWGC 3 cut(s) 168, 275, 377
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 663, 695
AspLEI GCGC 3 cut(s) 232, 467, 1108
AspS9I GGNCC 2 cut(s) 60, 990
AsuHPI GGTGA 3 cut(s) 632, 1018, 1084
AsuNHI GCTAGC 1 cut(s) 755
AvaI CYCGRG 1 cut(s) 279
AvaII GGWCC 1 cut(s) 990
BamHI GGATCC 2 cut(s) 798, 1210
BanII GRGCYC 1 cut(s) 486
BarI GAAGNNNNNNTAC 2 cut(s) 1059, 1091
Bbv12I GWGCWC 2 cut(s) 334, 486
BbvI GCAGC 3 cut(s) 155, 287, 389
BccI CCATC 4 cut(s) 446, 494, 672, 1222
BceAI ACGGC 1 cut(s) 238
BcgI CGANNNNNNTGC 2 cut(s) 906, 940
BclI TGATCA 1 cut(s) 958
BcoDI GTCTC 1 cut(s) 1216
BfaI CTAG 5 cut(s) 341, 432, 722, 756, 1178
BfmI CTRYAG 1 cut(s) 273
BfoI RGCGCY 1 cut(s) 233
BisI GCNGC 3 cut(s) 169, 276, 378
BlsI GCNGC 3 cut(s) 170, 277, 379
BmcAI AGTACT 1 cut(s) 52
Bme18I GGWCC 1 cut(s) 990
BmeT110I CYCGRG 1 cut(s) 279
BmgT120I GGNCC 2 cut(s) 60, 990
BmiI GGNNCC 4 cut(s) 800, 991, 1040, 1212
BmrI ACTGGG 1 cut(s) 1096
BmsI GCATC 2 cut(s) 24, 999
BmtI GCTAGC 1 cut(s) 759
BmuI ACTGGG 1 cut(s) 1096
BsaBI GATNNNNATC 1 cut(s) 456
BsaI GGTCTC 1 cut(s) 1216
Bsc4I CCNNNNNNNGG 1 cut(s) 1048
Bse1I ACTGG 3 cut(s) 215, 756, 1091
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 456
BseGI GGATG 2 cut(s) 457, 864
BseJI GATNNNNATC 1 cut(s) 456
BseLI CCNNNNNNNGG 1 cut(s) 1048
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 2 cut(s) 109, 255
BseNI ACTGG 3 cut(s) 215, 756, 1091
BseRI GAGGAG 1 cut(s) 1157
BseXI GCAGC 3 cut(s) 155, 287, 389
Bsh1236I CGCG 2 cut(s) 465, 1106
BshFI GGCC 3 cut(s) 61, 781, 1148
BsiHKAI GWGCWC 2 cut(s) 334, 486
BsiHKCI CYCGRG 1 cut(s) 279
BslFI GGGAC 2 cut(s) 105, 1003
BslI CCNNNNNNNGG 1 cut(s) 1048
BsmAI GTCTC 1 cut(s) 1216
BsmFI GGGAC 2 cut(s) 105, 1003
BsnI GGCC 3 cut(s) 61, 781, 1148
Bso31I GGTCTC 1 cut(s) 1216
BsoBI CYCGRG 1 cut(s) 279
Bsp1286I GDGCHC 2 cut(s) 334, 486
Bsp1407I TGTACA 1 cut(s) 543
Bsp143I GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
BspANI GGCC 3 cut(s) 61, 781, 1148
BspCNI CTCAG 2 cut(s) 108, 256
BspFNI CGCG 2 cut(s) 465, 1106
BspLI GGNNCC 4 cut(s) 800, 991, 1040, 1212
BspMAI CTGCAG 1 cut(s) 277
BspOI GCTAGC 1 cut(s) 759
BspPI GGATC 4 cut(s) 793, 806, 1205, 1218
BspTNI GGTCTC 1 cut(s) 1216
BsrDI GCAATG 1 cut(s) 748
BsrGI TGTACA 1 cut(s) 543
BsrI ACTGG 3 cut(s) 215, 756, 1091
BssMI GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
Bst4CI ACNGT 5 cut(s) 8, 140, 541, 872, 979
Bst6I CTCTTC 2 cut(s) 517, 1062
BstAPI GCANNNNNTGC 2 cut(s) 120, 383
BstAUI TGTACA 1 cut(s) 543
BstC8I GCNNGC 1 cut(s) 757
BstDEI CTNAG 5 cut(s) 95, 264, 322, 566, 953
BstF5I GGATG 2 cut(s) 457, 864
BstFNI CGCG 2 cut(s) 465, 1106
BstH2I RGCGCY 1 cut(s) 233
BstHHI GCGC 3 cut(s) 232, 467, 1108
BstKTI GATC 7 cut(s) 43, 307, 801, 864, 961, 1131, 1213
BstMAI GTCTC 1 cut(s) 1216
BstMBI GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
BstMWI GCNNNNNNNGC 3 cut(s) 120, 383, 1038
BstSFI CTRYAG 1 cut(s) 273
BstUI CGCG 2 cut(s) 465, 1106
BstV1I GCAGC 3 cut(s) 155, 287, 389
BstX2I RGATCY 2 cut(s) 798, 1210
BstYI RGATCY 2 cut(s) 798, 1210
BsuRI GGCC 3 cut(s) 61, 781, 1148
BtsCI GGATG 2 cut(s) 457, 864
BtsIMutI CAGTG 4 cut(s) 103, 537, 749, 868
Cac8I GCNNGC 1 cut(s) 757
CaiI CAGNNNCTG 1 cut(s) 120
CfoI GCGC 3 cut(s) 232, 467, 1108
Cfr13I GGNCC 2 cut(s) 60, 990
CseI GACGC 1 cut(s) 266
Csp6I GTAC 6 cut(s) 51, 220, 242, 544, 835, 1277
CspCI CAANNNNNGTGG 2 cut(s) 564, 599
CviAII CATG 4 cut(s) 38, 419, 1159, 1231
CviQI GTAC 6 cut(s) 51, 220, 242, 544, 835, 1277
DdeI CTNAG 5 cut(s) 95, 264, 322, 566, 953
DpnI GATC 7 cut(s) 42, 306, 800, 863, 960, 1130, 1212
DpnII GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
Eam1104I CTCTTC 2 cut(s) 517, 1062
EarI CTCTTC 2 cut(s) 517, 1062
Ecl136II GAGCTC 1 cut(s) 484
Eco147I AGGCCT 1 cut(s) 781
Eco24I GRGCYC 1 cut(s) 486
Eco31I GGTCTC 1 cut(s) 1216
Eco32I GATATC 1 cut(s) 877
Eco47I GGWCC 1 cut(s) 990
Eco53kI GAGCTC 1 cut(s) 484
Eco88I CYCGRG 1 cut(s) 279
EcoICRI GAGCTC 1 cut(s) 484
EcoRI GAATTC 1 cut(s) 629
EcoRV GATATC 1 cut(s) 877
EcoT22I ATGCAT 1 cut(s) 39
EcoT38I GRGCYC 1 cut(s) 486
FaeI CATG 4 cut(s) 41, 422, 1162, 1234
FalI AAGNNNNNCTT 2 cut(s) 514, 546
FaqI GGGAC 2 cut(s) 105, 1003
FatI CATG 4 cut(s) 37, 418, 1158, 1230
FbaI TGATCA 1 cut(s) 958
Fnu4HI GCNGC 3 cut(s) 169, 276, 378
FokI GGATG 2 cut(s) 464, 851
FriOI GRGCYC 1 cut(s) 486
Fsp4HI GCNGC 3 cut(s) 169, 276, 378
FspBI CTAG 5 cut(s) 341, 432, 722, 756, 1178
GlaI GCGC 3 cut(s) 231, 466, 1107
GluI GCNGC 3 cut(s) 169, 276, 378
HaeII RGCGCY 1 cut(s) 233
HaeIII GGCC 3 cut(s) 61, 781, 1148
HgaI GACGC 1 cut(s) 266
HhaI GCGC 3 cut(s) 232, 467, 1108
Hin1II CATG 4 cut(s) 41, 422, 1162, 1234
Hin6I GCGC 3 cut(s) 230, 465, 1106
HinP1I GCGC 3 cut(s) 230, 465, 1106
HindIII AAGCTT 1 cut(s) 944
HinfI GANTC 6 cut(s) 93, 268, 284, 552, 905, 970
HphI GGTGA 3 cut(s) 632, 1018, 1084
Hpy166II GTNNAC 4 cut(s) 14, 73, 544, 1093
Hpy188I TCNGA 7 cut(s) 265, 309, 509, 683, 928, 935, 969
Hpy188III TCNNGA 4 cut(s) 193, 281, 592, 899
Hpy8I GTNNAC 4 cut(s) 14, 73, 544, 1093
Hpy99I CGWCG 2 cut(s) 131, 848
HpyAV CCTTC 7 cut(s) 195, 347, 698, 1029, 1231, 1250, 1299
HpyCH4III ACNGT 5 cut(s) 8, 140, 541, 872, 979
HpyCH4V TGCA 9 cut(s) 4, 37, 88, 171, 275, 377, 650, 1032, 1200
HpyF10VI GCNNNNNNNGC 3 cut(s) 120, 383, 1038
HpyF3I CTNAG 5 cut(s) 95, 264, 322, 566, 953
Hsp92II CATG 4 cut(s) 41, 422, 1162, 1234
HspAI GCGC 3 cut(s) 230, 465, 1106
Ksp22I TGATCA 1 cut(s) 958
Kzo9I GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
LmnI GCTCC 2 cut(s) 329, 1038
Lsp1109I GCAGC 3 cut(s) 155, 287, 389
LweI GCATC 2 cut(s) 24, 999
MaeI CTAG 5 cut(s) 341, 432, 722, 756, 1178
MaeIII GTNAC 2 cut(s) 134, 1240
MalI GATC 7 cut(s) 42, 306, 800, 863, 960, 1130, 1212
MboI GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
MboII GAAGA 9 cut(s) 113, 190, 310, 500, 524, 534, 1076, 1079, 1246
MfeI CAATTG 1 cut(s) 381
MflI RGATCY 2 cut(s) 798, 1210
MhlI GDGCHC 2 cut(s) 334, 486
MluCI AATT 5 cut(s) 106, 381, 629, 804, 1191
MlyI GAGTC 2 cut(s) 87, 964
MmeI TCCRAC 3 cut(s) 579, 996, 1149
Mph1103I ATGCAT 1 cut(s) 39
MseI TTAA 2 cut(s) 174, 1118
MslI CAYNNNNRTG 1 cut(s) 9
MunI CAATTG 1 cut(s) 381
MvnI CGCG 2 cut(s) 465, 1106
MwoI GCNNNNNNNGC 3 cut(s) 120, 383, 1038
NdeII GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
NheI GCTAGC 1 cut(s) 755
NlaIII CATG 4 cut(s) 41, 422, 1162, 1234
NlaIV GGNNCC 4 cut(s) 800, 991, 1040, 1212
NmeAIII GCCGAG 1 cut(s) 669
NsiI ATGCAT 1 cut(s) 39
OliI CACNNNNGTG 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 279
PceI AGGCCT 1 cut(s) 781
PfeI GAWTC 4 cut(s) 268, 284, 552, 905
PkrI GCNGC 3 cut(s) 170, 277, 379
PleI GAGTC 2 cut(s) 87, 964
PpsI GAGTC 2 cut(s) 87, 964
Psp124BI GAGCTC 1 cut(s) 486
PspN4I GGNNCC 4 cut(s) 800, 991, 1040, 1212
PspPI GGNCC 2 cut(s) 60, 990
PstI CTGCAG 1 cut(s) 277
PstNI CAGNNNCTG 1 cut(s) 120
PsuI RGATCY 2 cut(s) 798, 1210
RsaI GTAC 6 cut(s) 52, 221, 243, 545, 836, 1278
RsaNI GTAC 6 cut(s) 51, 220, 242, 544, 835, 1277
RseI CAYNNNNRTG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 486
SaqAI TTAA 2 cut(s) 174, 1118
SatI GCNGC 3 cut(s) 169, 276, 378
Sau3AI GATC 7 cut(s) 40, 304, 798, 861, 958, 1128, 1210
Sau96I GGNCC 2 cut(s) 60, 990
ScaI AGTACT 1 cut(s) 52
SchI GAGTC 2 cut(s) 87, 964
SduI GDGCHC 2 cut(s) 334, 486
SfaNI GCATC 2 cut(s) 24, 999
SfcI CTRYAG 1 cut(s) 273
Sfr274I CTCGAG 1 cut(s) 279
SinI GGWCC 1 cut(s) 990
SlaI CTCGAG 1 cut(s) 279
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 279
SmoI CTYRAG 1 cut(s) 279
Sse9I AATT 5 cut(s) 106, 381, 629, 804, 1191
SseBI AGGCCT 1 cut(s) 781
SspMI CTAG 5 cut(s) 341, 432, 722, 756, 1178
SstI GAGCTC 1 cut(s) 486
StuI AGGCCT 1 cut(s) 781
TaaI ACNGT 5 cut(s) 8, 140, 541, 872, 979
TaqI TCGA 8 cut(s) 126, 194, 280, 486, 900, 1044, 1131, 1254
TasI AATT 5 cut(s) 106, 381, 629, 804, 1191
TatI WGTACW 3 cut(s) 50, 543, 834
TfiI GAWTC 4 cut(s) 268, 284, 552, 905
Tru1I TTAA 2 cut(s) 174, 1118
Tru9I TTAA 2 cut(s) 174, 1118
TscAI CASTG 4 cut(s) 103, 544, 756, 875
TseI GCWGC 3 cut(s) 168, 275, 377
TspDTI ATGAA 6 cut(s) 93, 717, 897, 1077, 1175, 1247
TspGWI ACGGA 1 cut(s) 811
TspRI CASTG 4 cut(s) 103, 544, 756, 875
VpaK11BI GGWCC 1 cut(s) 990
XapI RAATTY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 2 cut(s) 54, 809
XhoI CTCGAG 1 cut(s) 279
XspI CTAG 5 cut(s) 341, 432, 722, 756, 1178
ZrmI AGTACT 1 cut(s) 52
Zsp2I ATGCAT 1 cut(s) 39
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.