Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Forward (+)

39363 .. 45558

Gene Structure 6196 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG000500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2940 bp

ATGGAAACCTGGCTCCTCATCCTCACCACCCTCCTCCTCTCTCTCCTCCTCAAACCCATCCTCTCCCTCCTCCTCACCACCAACAAGCTCCCGCCGGGCCCCATCTCCTTCCCCATAATCAGCAGCTTCCTCTGGCTCCGCAAATCCTTCTCGGAGCTCGAGCCCATCATCCGCAACCTCCAGGCCCGTTACGGCCCAATCGTCACCCTCCGCATCGGCTCCCGCCCCGCCGTCTTCATCTCCAACCGCTCCCTGGCCCACCAAGCCTTAATCCAAAACGGCGCCGTCTTCGCCGACCGCCCCCCGGCCTTGGCCACCAACAGAATCATGAGCAGCAACCAGCACAACATCAGCTCCGCCGTCTACGGCCCCACGTGGCGCCTCCTCCGCCGCAACCTCACCTCCGAAATCCTCCACCCTTCCCGCGTCAAATCCTACTCCGGGGCCCGCAAGTGGGTCCTCGACATCCTCGCCAACCGCCTAACGGAATCCCAATCCCAATCCAACGGAGGGGGAGGAGTCAAAGTCGTTGACCATTTCCAGTACGCCATGTTCTGCTTGCTGGTTCTCATGTGTTTTGGAGACAAACTCGACGAGAACCAGATCAATAAAATCGAAGAGGTCCAGCGGAGGATGCTCCTCAGCTTCAGCCGGTTCAACATCCTCAATTTCTGGCCTTCATTGACGAGAATAGTCCTCAAGAATCGCTGGCAGGAGTTCTTTCGAATCCGAAAAGCCCAAGAAGATGTCCTAATCCTGGGCACCAATGCGTTCAACATCTTTCACCGTTCATCAACCGTCAGTAAGATTGTATTTGTCACTAAGGGGGGACTCCGTATGGTCGATCTCTCTCCGCACCTTCAATACTTCAACTTCAACTTCCAGTTCATAATGTGGAGGTTCAAGCCTTTTATGCACAAGGAGCCAGCTGGCCTCGAAGGCCGCTCCATTGACGTCGGAACTCTCAAGATTCAGGTGAAGAATGTCATTGCCGAAGGAGGGTTCTCTTGCGTTTACTTAGCTCGGGACCTCGTCCATACCTCAAAGCAGTATGCTTTGAAGCACATCATATGTAATGATGAAGAGTTGCTGGAGTTGGTGATGAAGGAAATCTCCGTCATGAAGTTACTCAGAGGGCATCCCAATGTTGTCACTCTCTATGCCCACGCCATCATGGATTTGGGCCGCACAAAGGAGGCACTCCTTGTCATGGAATATTGTGACAAGTCCCTGGTTAACGTACTCGATAGCAGAGGAGCTGGCTTTTTTGATGAGAAACAGGTCCTTGCAATCTTCAGAGATGTGTGTACTGCAGTTTTTGCAATGCACACACTGTCCCCTCCCATTGCTCATAGGGATTTGAAAGCTGAGAATCTTCTGTTGGGGCCGGATGGACTGTGGAAATTGTGTGATTTTGGAAGCACCTCTACCAACCACAAGCGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACATTATCAGAAAGCACACAACACCCGCCTACAGGGCCCCTGAGATGTGGGATCTATTTCGGAGAGAACTTATCAATGAGAAAGTAGACATATGGGCTCTTGGCTGCCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTCGATGGAGAGTCAAAGCTGCAGATCTTGAATGGAAACTATCGCATTCCTGAGTTACCTAAATACGGCTCGTCGATTACAGATCTCATCAGAGACATGCTTCAGGCATCACCAGACGACAGACCAGATATCACGCAGGTGTGGTTTCGTGTTAATGAGCTGTTACCAGATGGTTTACAGAAGTCTTTACCTGATAGGCCACCTGAAATGCACTCTGCTGGAAAACATGAAGGTTTTTCAAGGCCCGCAAACAAGTTGCCTGAAATGCCTCGCAGAAGCCCACCCCCACCACCTTCAGTGGGAGAATCAGCTAGAAATCCATCACAACTGTCAAATATGTCCAAGGCAGGGGGAGGTGGAGGGCCACTTGGTGCATTCTGGTCCACTCAGCATGCTGAGGATTCAGTTGTTGCTGAAGAAAAGACTGTACCTAAGTTTGATGATTCTAATCATCCTTTACCCAAGAACAGTGCCCCTGCAAAAGTGGAAAATACACCAGCTTATGCTGCACGAAGAAACTCACACGTGAAATCGCACAAGCATGAAGATGGATTTCCAAAGGACATTGAAATAAATTTCTTCCAGAAGGATACTGACCATGGTGCTGAGAGGCCAAAGGCATCCAAGCCTGAGAGTGCAACTAGTTTTCACGATGATGCATTTAACTCGTTTGTTGCTGAATTTGATACTAATAAACTCAGCGTGGGAGCTAGTAATAGCAAATCAGGAAAAGAAGGAGCATTAGAGACTGAAGTAGAGAGATTGAAGGAGCAGCTGAACCAAGCCAACATAGAAAAGGCTGAAATAACTTCCAAATTTGAAAAGCTATCAGCCATCTGCCGATCTCAAAGGCAAGAGTTGCAGGAGCTTAAGCAGACGCTTGCCGCTAGAACACCTTCACCGAATAAAGATGCTTTGAGAAATCAAATGTCACCTGGCATTCAGTCATCTGCAACCCCACCGCAGAGGGAGAAGATAGAAGGAGCCATTTGGGAACTCCAGCAGGATAAATCTGACCGGAAAACTCCGAGTCCAGAGACAAAGTCATGGCAGCCATTTGCAGAACCGCAGCCTTCTTCAACGGACAACACTGTCAAATCTGTCAGGACAAGAAATGGTCACCAGAACAAGCAAGCTACGACTCAAGTAAATACTGGTTTTGACTCGTGGGGTTTTGGAACAGAGAGCTTTTCTGCTGCGCCCACTGGAAGCACCCAAATATCAAGACCTATGGGTGAAGGAAATATTTCTCAGCGTTTTGGTGACACAAAGGCTATGGAGAGCAAGCCAGCTTCTCAACCTGCTGGATGGGCTGGTTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

979

Amino Acids

110.02

Weight (kDa)

9.09

Isoelectric Point (pI)

52.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
p450	PF00067	31 - 251	2.1e-27	Cytochrome P450
PK_Tyr_Ser-Thr	PF07714	324 - 586	4e-24	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	325 - 586	3.1e-40	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1744
AasI	GACNNNNNNGTC	1 cut(s)	2708
AatII	GACGTC	1 cut(s)	957
Acc36I	ACCTGC	2 cut(s)	1744, 2926
AccB1I	GGYRCC	3 cut(s)	281, 378, 761
AccBSI	CCGCTC	2 cut(s)	249, 945
AccI	GTMKAC	2 cut(s)	363, 1563
AccII	CGCG	1 cut(s)	426
AclWI	GGATC	1 cut(s)	1536
AcoI	YGGCCR	1 cut(s)	312
AcsI	RAATTY	3 cut(s)	2191, 2297, 2432
AcuI	CTGAAG	7 cut(s)	631, 1279, 1476, 1703, 1896, 2052, 2388
AcvI	CACGTG	2 cut(s)	375, 2143
AcyI	GRCGYC	3 cut(s)	282, 379, 954
AdeI	CACNNNGTG	1 cut(s)	1988
AfaI	GTAC	4 cut(s)	545, 1242, 1309, 2046
AfeI	AGCGCT	1 cut(s)	1442
AflII	CTTAAG	1 cut(s)	2486
AflIII	ACRYGT	1 cut(s)	2140
AhlI	ACTAGT	1 cut(s)	2258
AjnI	CCWGG	6 cut(s)	8, 180, 252, 756, 1230, 2551
AjuI	GAANNNNNNNTTGG	2 cut(s)	1364, 1396
AleI	CACNNNNGTG	1 cut(s)	1754
Alw21I	GWGCWC	1 cut(s)	159
Alw26I	GTCTC	4 cut(s)	576, 1704, 2357, 2648
AlwI	GGATC	1 cut(s)	1536
Ama87I	CYCGRG	2 cut(s)	158, 1023
Aor51HI	AGCGCT	1 cut(s)	1442
ApaI	GGGCCC	3 cut(s)	101, 448, 1516
ApeKI	GCWGC	9 cut(s)	123, 333, 1581, 1636, 2123, 2389, 2668, 2686, 2813
ApoI	RAATTY	3 cut(s)	2191, 2297, 2432
Asp700I	GAANNNNTTC	2 cut(s)	2512, 2863
AspLEI	GCGC	4 cut(s)	284, 381, 1443, 2818
AsuC2I	CCSGG	3 cut(s)	96, 305, 442
AsuII	TTCGAA	1 cut(s)	724
AvaI	CYCGRG	2 cut(s)	158, 1023
AvaII	GGWCC	5 cut(s)	457, 622, 1027, 1282, 1998
BaeGI	GKGCMC	5 cut(s)	101, 448, 764, 1516, 2092
BalI	TGGCCA	1 cut(s)	314
BanI	GGYRCC	3 cut(s)	281, 378, 761
BanII	GRGCYC	6 cut(s)	101, 159, 165, 448, 1516, 1576
BarI	GAAGNNNNNNTAC	2 cut(s)	1411, 1443
BauI	CACGAG	1 cut(s)	2782
BbrPI	CACGTG	2 cut(s)	375, 2143
BbsI	GAAGAC	3 cut(s)	226, 280, 1482
Bbv12I	GWGCWC	1 cut(s)	159
BbvCI	CCTCAGC	2 cut(s)	641, 2013
BbvI	GCAGC	9 cut(s)	135, 345, 1568, 1623, 2110, 2401, 2680, 2698, 2800
BceAI	ACGGC	7 cut(s)	208, 215, 269, 295, 344, 382, 1699
BcgI	CGANNNNNNTGC	2 cut(s)	2265, 2299
BciT130I	CCWGG	6 cut(s)	10, 182, 254, 758, 1232, 2553
BciVI	GTATCC	1 cut(s)	2200
BcnI	CCSGG	3 cut(s)	96, 305, 442
BcoDI	GTCTC	4 cut(s)	576, 1704, 2357, 2648
BcuI	ACTAGT	1 cut(s)	2258
BfaI	CTAG	4 cut(s)	1929, 2259, 2328, 2505
BfmI	CTRYAG	3 cut(s)	1311, 1507, 1637
BfoI	RGCGCY	3 cut(s)	285, 382, 1444
BfrI	CTTAAG	1 cut(s)	2486
BfuAI	ACCTGC	2 cut(s)	1744, 2926
BfuI	GTATCC	1 cut(s)	2200
BglI	GCCNNNNNGGC	2 cut(s)	939, 1511
BglII	AGATCT	2 cut(s)	1641, 1699
Bme1390I	CCNGG	9 cut(s)	10, 96, 182, 254, 305, 442, 758, 1232, 2553
Bme18I	GGWCC	5 cut(s)	457, 622, 1027, 1282, 1998
BmeT110I	CYCGRG	2 cut(s)	158, 1023
BmrFI	CCNGG	9 cut(s)	10, 96, 182, 254, 305, 442, 758, 1232, 2553
BmsI	GCATC	7 cut(s)	222, 624, 1147, 1733, 2246, 2263, 2518
BpiI	GAAGAC	3 cut(s)	226, 280, 1482
BplI	GAGNNNNNCTC	2 cut(s)	573, 605
BpmI	CTGGAG	3 cut(s)	164, 1112, 2600
Bpu10I	CCTNAGC	2 cut(s)	641, 2013
Bpu14I	TTCGAA	1 cut(s)	724
BpuEI	CTTGAG	3 cut(s)	683, 950, 2745
BpuMI	CCSGG	3 cut(s)	96, 305, 442
BsaAI	YACGTR	2 cut(s)	375, 2143
BsaBI	GATNNNNATC	1 cut(s)	2064
BsaHI	GRCGYC	3 cut(s)	282, 379, 954
BsaJI	CCNNGG	8 cut(s)	252, 303, 309, 441, 757, 1230, 1959, 2215
BsaWI	WCCGGW	1 cut(s)	2634
BsaXI	ACNNNNNCTCC	6 cut(s)	338, 368, 386, 416, 510, 540
Bse118I	RCCGGY	1 cut(s)	651
Bse1I	ACTGG	4 cut(s)	541, 883, 2776, 2827
Bse3DI	GCAATG	3 cut(s)	987, 1329, 1344
Bse8I	GATNNNNATC	1 cut(s)	2064
BseBI	CCWGG	6 cut(s)	10, 182, 254, 758, 1232, 2553
BseDI	CCNNGG	8 cut(s)	252, 303, 309, 441, 757, 1230, 1959, 2215
BseJI	GATNNNNATC	1 cut(s)	2064
BseMI	GCAATG	3 cut(s)	987, 1329, 1344
BseNI	ACTGG	4 cut(s)	541, 883, 2776, 2827
BseSI	GKGCMC	5 cut(s)	101, 448, 764, 1516, 2092
BseXI	GCAGC	9 cut(s)	135, 345, 1568, 1623, 2110, 2401, 2680, 2698, 2800
BsgI	GTGCAG	1 cut(s)	2109
Bsh1236I	CGCG	1 cut(s)	426
Bsh1285I	CGRYCG	1 cut(s)	298
BshNI	GGYRCC	3 cut(s)	281, 378, 761
BsiEI	CGRYCG	1 cut(s)	298
BsiHKAI	GWGCWC	1 cut(s)	159
BsiHKCI	CYCGRG	2 cut(s)	158, 1023
BsiSI	CCGG	6 cut(s)	95, 305, 441, 652, 1388, 2635
BslFI	GGGAC	4 cut(s)	843, 1040, 1213, 1321
BsmAI	GTCTC	4 cut(s)	576, 1704, 2357, 2648
BsmFI	GGGAC	4 cut(s)	843, 1040, 1213, 1321
BsmI	GAATGC	4 cut(s)	1616, 1662, 1991, 2556
BsoBI	CYCGRG	2 cut(s)	158, 1023
Bsp119I	TTCGAA	1 cut(s)	724
Bsp120I	GGGCCC	3 cut(s)	97, 444, 1512
Bsp1286I	GDGCHC	8 cut(s)	101, 159, 165, 448, 764, 1516, 1576, 2092
Bsp143I	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
Bsp19I	CCATGG	1 cut(s)	2215
BspFNI	CGCG	1 cut(s)	426
BspHI	TCATGA	2 cut(s)	327, 1119
BspMAI	CTGCAG	2 cut(s)	1315, 1641
BspMI	ACCTGC	2 cut(s)	1744, 2926
BspPI	GGATC	1 cut(s)	1536
BspT104I	TTCGAA	1 cut(s)	724
BspT107I	GGYRCC	3 cut(s)	281, 378, 761
BspTI	CTTAAG	1 cut(s)	2486
BsrBI	CCGCTC	2 cut(s)	249, 945
BsrDI	GCAATG	3 cut(s)	987, 1329, 1344
BsrFI	RCCGGY	1 cut(s)	651
BsrI	ACTGG	4 cut(s)	541, 883, 2776, 2827
BssAI	RCCGGY	1 cut(s)	651
BssECI	CCNNGG	8 cut(s)	252, 303, 309, 441, 757, 1230, 1959, 2215
BssMI	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
BssNI	GRCGYC	3 cut(s)	282, 379, 954
BssSI	CACGAG	1 cut(s)	2782
BssT1I	CCWWGG	3 cut(s)	309, 1959, 2215
Bst2BI	CACGAG	1 cut(s)	2782
Bst2UI	CCWGG	6 cut(s)	10, 182, 254, 758, 1232, 2553
Bst4CI	ACNGT	8 cut(s)	788, 799, 1335, 1398, 1947, 2044, 2087, 2710
Bst6I	CTCTTC	2 cut(s)	612, 1077
BstACI	GRCGYC	3 cut(s)	282, 379, 954
BstAFI	CTTAAG	1 cut(s)	2486
BstAPI	GCANNNNNTGC	2 cut(s)	1319, 2476
BstBAI	YACGTR	2 cut(s)	375, 2143
BstBI	TTCGAA	1 cut(s)	724
BstDSI	CCRYGG	1 cut(s)	2215
BstEII	GGTNACC	1 cut(s)	2735
BstFNI	CGCG	1 cut(s)	426
BstH2I	RGCGCY	3 cut(s)	285, 382, 1444
BstHHI	GCGC	4 cut(s)	284, 381, 1443, 2818
BstKTI	GATC	6 cut(s)	606, 847, 1531, 1644, 1702, 2462
BstMAI	GTCTC	4 cut(s)	576, 1704, 2357, 2648
BstMBI	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
BstMCI	CGRYCG	1 cut(s)	298
BstNI	CCWGG	6 cut(s)	10, 182, 254, 758, 1232, 2553
BstNSI	RCATGY	2 cut(s)	1717, 2012
BstPI	GGTNACC	1 cut(s)	2735
BstSCI	CCNGG	9 cut(s)	8, 94, 180, 252, 303, 440, 756, 1230, 2551
BstSFI	CTRYAG	3 cut(s)	1311, 1507, 1637
BstSLI	GKGCMC	5 cut(s)	101, 448, 764, 1516, 2092
BstUI	CGCG	1 cut(s)	426
BstV1I	GCAGC	9 cut(s)	135, 345, 1568, 1623, 2110, 2401, 2680, 2698, 2800
BstV2I	GAAGAC	3 cut(s)	226, 280, 1482
BstX2I	RGATCY	3 cut(s)	1528, 1641, 1699
BstYI	RGATCY	3 cut(s)	1528, 1641, 1699
BsuI	GTATCC	1 cut(s)	2200
BtgI	CCRYGG	1 cut(s)	2215
BtsIMutI	CAGTG	5 cut(s)	1331, 1920, 2092, 2706, 2820
BveI	ACCTGC	2 cut(s)	1744, 2926
CciI	TCATGA	2 cut(s)	327, 1119
CfoI	GCGC	4 cut(s)	284, 381, 1443, 2818
Cfr10I	RCCGGY	1 cut(s)	651
CseI	GACGC	2 cut(s)	415, 2503
Csp6I	GTAC	4 cut(s)	544, 1241, 1308, 2045
CviQI	GTAC	4 cut(s)	544, 1241, 1308, 2045
DinI	GGCGCC	2 cut(s)	283, 380
DpnI	GATC	6 cut(s)	605, 846, 1530, 1643, 1701, 2461
DpnII	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
DraIII	CACNNNGTG	1 cut(s)	1988
DrdI	GACNNNNNNGTC	1 cut(s)	2708
DseDI	GACNNNNNNGTC	1 cut(s)	2708
EaeI	YGGCCR	1 cut(s)	312
Eam1104I	CTCTTC	2 cut(s)	612, 1077
EarI	CTCTTC	2 cut(s)	612, 1077
EciI	GGCGGA	2 cut(s)	346, 377
Ecl136II	GAGCTC	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	309, 1959, 2215
Eco24I	GRGCYC	6 cut(s)	101, 159, 165, 448, 1516, 1576
Eco32I	GATATC	1 cut(s)	1747
Eco47I	GGWCC	5 cut(s)	457, 622, 1027, 1282, 1998
Eco47III	AGCGCT	1 cut(s)	1442
Eco53kI	GAGCTC	1 cut(s)	157
Eco57I	CTGAAG	7 cut(s)	631, 1279, 1476, 1703, 1896, 2052, 2388
Eco72I	CACGTG	2 cut(s)	375, 2143
Eco88I	CYCGRG	2 cut(s)	158, 1023
Eco91I	GGTNACC	1 cut(s)	2735
EcoICRI	GAGCTC	1 cut(s)	157
EcoO109I	RGGNCCY	7 cut(s)	98, 444, 457, 1027, 1282, 1512, 1513
EcoO65I	GGTNACC	1 cut(s)	2735
EcoRII	CCWGG	6 cut(s)	8, 180, 252, 756, 1230, 2551
EcoRV	GATATC	1 cut(s)	1747
EcoT14I	CCWWGG	3 cut(s)	309, 1959, 2215
EcoT22I	ATGCAT	1 cut(s)	2278
EcoT38I	GRGCYC	6 cut(s)	101, 159, 165, 448, 1516, 1576
EgeI	GGCGCC	2 cut(s)	283, 380
EheI	GGCGCC	2 cut(s)	283, 380
ErhI	CCWWGG	3 cut(s)	309, 1959, 2215
FaqI	GGGAC	4 cut(s)	843, 1040, 1213, 1321
FauI	CCCGC	7 cut(s)	99, 230, 235, 431, 455, 1510, 1870
FauNDI	CATATG	2 cut(s)	1070, 1568
FblI	GTMKAC	2 cut(s)	363, 1563
FriOI	GRGCYC	6 cut(s)	101, 159, 165, 448, 1516, 1576
FspBI	CTAG	4 cut(s)	1929, 2259, 2328, 2505
GlaI	GCGC	4 cut(s)	283, 380, 1442, 2817
GsuI	CTGGAG	3 cut(s)	164, 1112, 2600
HaeII	RGCGCY	3 cut(s)	285, 382, 1444
HapII	CCGG	6 cut(s)	95, 305, 441, 652, 1388, 2635
HgaI	GACGC	2 cut(s)	415, 2503
HhaI	GCGC	4 cut(s)	284, 381, 1443, 2818
Hin1I	GRCGYC	3 cut(s)	282, 379, 954
Hin6I	GCGC	4 cut(s)	282, 379, 1441, 2816
HinP1I	GCGC	4 cut(s)	282, 379, 1441, 2816
HincII	GTYRAC	2 cut(s)	532, 1237
HindII	GTYRAC	2 cut(s)	532, 1237
HpaI	GTTAAC	1 cut(s)	1237
HpaII	CCGG	6 cut(s)	95, 305, 441, 652, 1388, 2635
Hpy166II	GTNNAC	8 cut(s)	364, 532, 1015, 1237, 1308, 1564, 1793, 2001
Hpy8I	GTNNAC	8 cut(s)	364, 532, 1015, 1237, 1308, 1564, 1793, 2001
Hpy99I	CGWCG	3 cut(s)	596, 959, 1693
HpyCH4III	ACNGT	8 cut(s)	788, 799, 1335, 1398, 1947, 2044, 2087, 2710
HpyCH4IV	ACGT	4 cut(s)	374, 954, 1239, 2142
HpySE526I	ACGT	4 cut(s)	374, 954, 1239, 2142
Hsp92I	GRCGYC	3 cut(s)	282, 379, 954
HspAI	GCGC	4 cut(s)	282, 379, 1441, 2816
KasI	GGCGCC	2 cut(s)	281, 378
KspAI	GTTAAC	1 cut(s)	1237
Kzo9I	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
Lsp1109I	GCAGC	9 cut(s)	135, 345, 1568, 1623, 2110, 2401, 2680, 2698, 2800
LweI	GCATC	7 cut(s)	222, 624, 1147, 1733, 2246, 2263, 2518
MaeI	CTAG	4 cut(s)	1929, 2259, 2328, 2505
MaeII	ACGT	4 cut(s)	374, 954, 1239, 2142
MalI	GATC	6 cut(s)	605, 846, 1530, 1643, 1701, 2461
MbiI	CCGCTC	2 cut(s)	249, 945
MboI	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
MflI	RGATCY	3 cut(s)	1528, 1641, 1699
MhlI	GDGCHC	8 cut(s)	101, 159, 165, 448, 764, 1516, 1576, 2092
MlsI	TGGCCA	1 cut(s)	314
MluCI	AATT	5 cut(s)	667, 1403, 2191, 2297, 2432
MluNI	TGGCCA	1 cut(s)	314
Mly113I	GGCGCC	2 cut(s)	282, 379
MlyI	GAGTC	6 cut(s)	528, 825, 1637, 2656, 2752, 2774
MmeI	TCCRAC	3 cut(s)	267, 528, 937
Mox20I	TGGCCA	1 cut(s)	314
Mph1103I	ATGCAT	1 cut(s)	2278
MroXI	GAANNNNTTC	2 cut(s)	2512, 2863
MscI	TGGCCA	1 cut(s)	314
MseI	TTAA	5 cut(s)	269, 1236, 1770, 2280, 2487
MslI	CAYNNNNRTG	5 cut(s)	1143, 1754, 2157, 2163, 2271
Msp20I	TGGCCA	1 cut(s)	314
MspA1I	CMGCKG	3 cut(s)	628, 929, 2392
MspCI	CTTAAG	1 cut(s)	2486
MspI	CCGG	6 cut(s)	95, 305, 441, 652, 1388, 2635
MspR9I	CCNGG	9 cut(s)	10, 96, 182, 254, 305, 442, 758, 1232, 2553
Mva1269I	GAATGC	4 cut(s)	1616, 1662, 1991, 2556
MvaI	CCWGG	6 cut(s)	10, 182, 254, 758, 1232, 2553
MvnI	CGCG	1 cut(s)	426
NarI	GGCGCC	2 cut(s)	282, 379
NciI	CCSGG	3 cut(s)	96, 305, 442
NcoI	CCATGG	1 cut(s)	2215
NdeI	CATATG	2 cut(s)	1070, 1568
NdeII	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
NmuCI	GTSAC	7 cut(s)	202, 817, 1150, 1220, 2547, 2735, 2879
NsiI	ATGCAT	1 cut(s)	2278
NspI	RCATGY	2 cut(s)	1717, 2012
NspV	TTCGAA	1 cut(s)	724
OliI	CACNNNNGTG	1 cut(s)	1754
PaeI	GCATGC	1 cut(s)	2012
PaeR7I	CTCGAG	1 cut(s)	158
PagI	TCATGA	2 cut(s)	327, 1119
PaqCI	CACCTGC	1 cut(s)	1744
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PctI	GAATGC	4 cut(s)	1616, 1662, 1991, 2556
PdmI	GAANNNNTTC	2 cut(s)	2512, 2863
PfeI	GAWTC	9 cut(s)	324, 488, 703, 726, 970, 1372, 1922, 2018, 2060
PflFI	GACNNNGTC	2 cut(s)	1031, 2659
PleI	GAGTC	6 cut(s)	527, 825, 1636, 2655, 2752, 2774
PluTI	GGCGCC	2 cut(s)	285, 382
PmaCI	CACGTG	2 cut(s)	375, 2143
PmlI	CACGTG	2 cut(s)	375, 2143
PpsI	GAGTC	6 cut(s)	527, 825, 1636, 2655, 2752, 2774
Ppu21I	YACGTR	2 cut(s)	375, 2143
PpuMI	RGGWCCY	3 cut(s)	457, 1027, 1282
Psp124BI	GAGCTC	1 cut(s)	159
Psp5II	RGGWCCY	3 cut(s)	457, 1027, 1282
Psp6I	CCWGG	6 cut(s)	8, 180, 252, 756, 1230, 2551
PspCI	CACGTG	2 cut(s)	375, 2143
PspEI	GGTNACC	1 cut(s)	2735
PspGI	CCWGG	6 cut(s)	8, 180, 252, 756, 1230, 2551
PspOMI	GGGCCC	3 cut(s)	97, 444, 1512
PspPPI	RGGWCCY	3 cut(s)	457, 1027, 1282
PspXI	VCTCGAGB	1 cut(s)	158
PsrI	GAACNNNNNNTAC	2 cut(s)	536, 568
PstI	CTGCAG	2 cut(s)	1315, 1641
PsuI	RGATCY	3 cut(s)	1528, 1641, 1699
PsyI	GACNNNGTC	2 cut(s)	1031, 2659
PvuII	CAGCTG	2 cut(s)	929, 2392
RsaI	GTAC	4 cut(s)	545, 1242, 1309, 2046
RsaNI	GTAC	4 cut(s)	544, 1241, 1308, 2045
RseI	CAYNNNNRTG	5 cut(s)	1143, 1754, 2157, 2163, 2271
SacI	GAGCTC	1 cut(s)	159
SaqAI	TTAA	5 cut(s)	269, 1236, 1770, 2280, 2487
Sau3AI	GATC	6 cut(s)	603, 844, 1528, 1641, 1699, 2459
SchI	GAGTC	6 cut(s)	528, 825, 1637, 2656, 2752, 2774
ScrFI	CCNGG	9 cut(s)	10, 96, 182, 254, 305, 442, 758, 1232, 2553
SduI	GDGCHC	8 cut(s)	101, 159, 165, 448, 764, 1516, 1576, 2092
SfaNI	GCATC	7 cut(s)	222, 624, 1147, 1733, 2246, 2263, 2518
SfcI	CTRYAG	3 cut(s)	1311, 1507, 1637
SfiI	GGCCNNNNNGGCC	1 cut(s)	939
SfoI	GGCGCC	2 cut(s)	283, 380
Sfr274I	CTCGAG	1 cut(s)	158
SfuI	TTCGAA	1 cut(s)	724
SinI	GGWCC	5 cut(s)	457, 622, 1027, 1282, 1998
SlaI	CTCGAG	1 cut(s)	158
SmiMI	CAYNNNNRTG	5 cut(s)	1143, 1754, 2157, 2163, 2271
SmlI	CTYRAG	5 cut(s)	158, 698, 965, 2486, 2760
SmoI	CTYRAG	5 cut(s)	158, 698, 965, 2486, 2760
SpeI	ACTAGT	1 cut(s)	2258
SphI	GCATGC	1 cut(s)	2012
Sse9I	AATT	5 cut(s)	667, 1403, 2191, 2297, 2432
SspDI	GGCGCC	2 cut(s)	281, 378
SspI	AATATT	2 cut(s)	1217, 2863
SspMI	CTAG	4 cut(s)	1929, 2259, 2328, 2505
SstI	GAGCTC	1 cut(s)	159
StyD4I	CCNGG	9 cut(s)	8, 94, 180, 252, 303, 440, 756, 1230, 2551
StyI	CCWWGG	3 cut(s)	309, 1959, 2215
TaaI	ACNGT	8 cut(s)	788, 799, 1335, 1398, 1947, 2044, 2087, 2710
TaiI	ACGT	4 cut(s)	377, 957, 1242, 2145
TasI	AATT	5 cut(s)	667, 1403, 2191, 2297, 2432
TatI	WGTACW	1 cut(s)	1307
TauI	GCSGC	4 cut(s)	393, 945, 1188, 2504
TfiI	GAWTC	9 cut(s)	324, 488, 703, 726, 970, 1372, 1922, 2018, 2060
Tru1I	TTAA	5 cut(s)	269, 1236, 1770, 2280, 2487
Tru9I	TTAA	5 cut(s)	269, 1236, 1770, 2280, 2487
TscAI	CASTG	5 cut(s)	1338, 1920, 2092, 2713, 2827
TseFI	GTSAC	7 cut(s)	202, 817, 1150, 1220, 2547, 2735, 2879
TseI	GCWGC	9 cut(s)	123, 333, 1581, 1636, 2123, 2389, 2668, 2686, 2813
Tsp45I	GTSAC	7 cut(s)	202, 817, 1150, 1220, 2547, 2735, 2879
TspDTI	ATGAA	9 cut(s)	226, 669, 780, 877, 1095, 1118, 1136, 1860, 2175
TspGWI	ACGGA	5 cut(s)	500, 522, 824, 1105, 2714
TspRI	CASTG	5 cut(s)	1338, 1920, 2092, 2713, 2827
Tth111I	GACNNNGTC	2 cut(s)	1031, 2659
Vha464I	CTTAAG	1 cut(s)	2486
VpaK11BI	GGWCC	5 cut(s)	457, 622, 1027, 1282, 1998
XapI	RAATTY	3 cut(s)	2191, 2297, 2432
XceI	RCATGY	2 cut(s)	1717, 2012
XcmI	CCANNNNNNNNNTGG	2 cut(s)	250, 1177
XhoI	CTCGAG	1 cut(s)	158
XmiI	GTMKAC	2 cut(s)	363, 1563
XmnI	GAANNNNTTC	2 cut(s)	2512, 2863
XspI	CTAG	4 cut(s)	1929, 2259, 2328, 2505
ZraI	GACGTC	1 cut(s)	955
Zsp2I	ATGCAT	1 cut(s)	2278

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.