RchiOBHm_Chr1g0313531

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001175
Physical Location & Seq
Reverse (-)
562413 .. 564227
1815 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54434

Sequence Viewer

Length: 1815 bp
ATGGCCTTCTCTGTTCTCCACTTGCTTGCGCTTTACCTTATCGTCCAACCATTTTGTGTACATGCTGCTCAAACTGCAAATATAAGCTTGGGGTTGTCCCTAACTGCATCAGACAACTCTCTTTCGTGGCAATCTCCCTCCGGGGAATTTGCGTTTGGGTTTCGCCGTATTGGTGATCAGGACCTCTTCTTGCTTGCCATTTGGTATGACAAGATTCCAGAAAAGACTCTTGTTTGGTATGCAAATGGAGACAATCCAACACCAAAAGGATCCAAAGTGGAGCTCACAAAAGATGGTAATTTCAGGCTCACTGGCCCTCGGAAAGAGGAAATCTGGCCGCAGCCTGTTATTAGTGGAGTTGCTTATGCTGCCATGCTTGACTCAGGTAACTTTGTTCTTGCAGACCAGAATTCAGCTCTTTTATGGCAGAGCTTCAAAGACCCCAAAGACACCATTTTACCAACCCAAGTGTTGGAAATTGGAGAAAAGCTATCTTCTAGGCAGACTGCAAGCAACTACTCAAAGGGGAAGTTTCAACTCCAATTTAAACCAGACGGTACGCTTGAGTTGTACCCCATAGCCTTGCCTACGGAGTTTGAATATGATGCTTACTACAAAAGCAATACATCTGATGCAGCTGATAAATTGAATTCTGGCTATCAGCTAGTCTTCAATGAGTCGGGTCATATCAACATTGTTCTGCGGAATGGAAATATAGTAACCCTCACAAACAAAACCGTATCGCCATCAAGAGATTACTATTACAGAGCAACACTAGATTTTGATGGGCTTTTTACCCTATATGCTTATCCAAAAAAAGGGAGCGGGACATCCTGGTCCTCTTTGTGGTCTATCCCAGAAAACATTTGCTTCGCCTTCGATTCAACTGGAGAGGAGGGCGGCGGGCCATGTGGATATAACAGTTACTGCAGACTTGATGCAAACACAAGGCCAATTTGTGATTGCGTTCCTGGCTTTTCTGCTTTAGATCCCCAATATAAGTTGCGCGGCTGCAAACAAGACAGGATGCACAGTTGTGAACTAGGTGATTCAAAGCCACAAGATGTATATGTGATGCATGAGCTACCAAATACTTTCTGGCCCTCTTCTTCAAACTTTGAAGTATTGCAGCAACTCAATGAAGATGATTGTAGGAGGTCTTGCCTCGATGATTGTAACTGTGTGGTAGCAACTATCAGAGCTGGGAGGTGCTGGAAGAAGAAACTGCCACTCTCCAATGGAAGGCAGGACTGGAATGAGTATGGCAAGGCTCTCATCAAATTACCAAAATCTGATGCTCTAGAGAATCCTGCATCTCGAGATTCAAACACAGAAAAGAAAGATCAGAAAACTGTCATCTTAGTAGGAGCACTCCTTCTAGGTAGCTCTGTGTTTATCAACTTCCTATTGGTTGCAGCAATTGCTTTTCTTGTTTTCTATACATACCGAAAAACACATAGGGTTATCACTAGCACATCCAGTATCATGGAAGCAAATCTACTCGCTTTTACTTACAAAGAGCTCGAAGAAGCCACAGATGGTTTCAGAGAAGAACTTGGAAGAGGGGCTTTCGGCACTGTGTATAAGGGAGTCATATCATCTCCAAGCTCAACAAACTATGTGGCGATCAAGAAGTTGGACAAGGTGGAACAACAAGGTGAAAAGGAATTCAAAACGGAAGTGAGTGCAATAGCCAAGACCCATCACAAAAACCTCGTCAGACTGCTCGGCTTGTGTGATGAAGGGGCAAATAGACTCCTAGTCTATGAGTTTATGAGCAATGGAACACTAGCTAGCTTTCTGTTTGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

604

Amino Acids

67.36

Weight (kDa)

6.01

Isoelectric Point (pI)

39.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
B_lectin PF01453 76 - 165 3.8e-15 D-mannose binding lectin
PK_Tyr_Ser-Thr PF07714 515 - 601 5.9e-18 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 517 - 600 4.6e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 835
AccB7I CCANNNNNTGG 1 cut(s) 472
AccBSI CCGCTC 1 cut(s) 825
AccII CGCG 1 cut(s) 1008
AciI CCGC 6 cut(s) 338, 703, 825, 900, 903, 1008
AclWI GGATC 3 cut(s) 264, 277, 983
AcoI YGGCCR 1 cut(s) 335
AcsI RAATTY 4 cut(s) 146, 409, 649, 1667
AfaI GTAC 3 cut(s) 60, 559, 572
AfiI CCNNNNNNNGG 4 cut(s) 472, 818, 846, 1242
AhdI GACNNNNNGTC 1 cut(s) 1760
AjnI CCWGG 2 cut(s) 833, 970
AjuI GAANNNNNNNTTGG 2 cut(s) 138, 170
AleI CACNNNNGTG 1 cut(s) 1035
Alw21I GWGCWC 3 cut(s) 285, 1372, 1524
Alw26I GTCTC 1 cut(s) 243
AlwI GGATC 3 cut(s) 264, 277, 983
AlwNI CAGNNNCTG 1 cut(s) 927
Ama87I CYCGRG 1 cut(s) 1317
AoxI GGCC 6 cut(s) 3, 313, 335, 905, 950, 1100
ApeKI GCWGC 7 cut(s) 65, 340, 368, 635, 1011, 1129, 1415
ApoI RAATTY 4 cut(s) 146, 409, 649, 1667
ArsI GACNNNNNNTTYG 2 cut(s) 1701, 1733
AspLEI GCGC 2 cut(s) 31, 1008
AspS9I GGNCC 5 cut(s) 181, 314, 837, 905, 1101
AsuC2I CCSGG 1 cut(s) 142
AsuHPI GGTGA 3 cut(s) 185, 1058, 1670
AsuNHI GCTAGC 1 cut(s) 1793
AvaI CYCGRG 1 cut(s) 1317
AvaII GGWCC 2 cut(s) 181, 837
BamHI GGATCC 1 cut(s) 269
BanII GRGCYC 2 cut(s) 285, 1524
BarI GAAGNNNNNNTAC 2 cut(s) 1482, 1514
BbsI GAAGAC 1 cut(s) 661
Bbv12I GWGCWC 3 cut(s) 285, 1372, 1524
BbvI GCAGC 7 cut(s) 52, 352, 355, 647, 998, 1141, 1427
BccI CCATC 5 cut(s) 287, 754, 779, 1532, 1710
BceAI ACGGC 1 cut(s) 150
BciT130I CCWGG 2 cut(s) 835, 972
BclI TGATCA 1 cut(s) 175
BcnI CCSGG 1 cut(s) 142
BcoDI GTCTC 1 cut(s) 243
BfmI CTRYAG 1 cut(s) 928
Bme1390I CCNGG 3 cut(s) 142, 835, 972
Bme18I GGWCC 2 cut(s) 181, 837
BmeRI GACNNNNNGTC 1 cut(s) 1760
BmeT110I CYCGRG 1 cut(s) 1317
BmgT120I GGNCC 5 cut(s) 181, 314, 837, 905, 1101
BmiI GGNNCC 1 cut(s) 271
BmrFI CCNGG 3 cut(s) 142, 835, 972
BmsI GCATC 8 cut(s) 116, 595, 622, 928, 1017, 1065, 1285, 1322
BmtI GCTAGC 1 cut(s) 1797
BpiI GAAGAC 1 cut(s) 661
BpmI CTGGAG 1 cut(s) 909
BpuEI CTTGAG 1 cut(s) 584
BpuMI CCSGG 1 cut(s) 142
BsaJI CCNNGG 2 cut(s) 141, 317
Bsc4I CCNNNNNNNGG 4 cut(s) 472, 818, 846, 1242
Bse1I ACTGG 4 cut(s) 316, 892, 1256, 1479
Bse3DI GCAATG 1 cut(s) 1786
BseBI CCWGG 2 cut(s) 835, 972
BseDI CCNNGG 2 cut(s) 141, 317
BseGI GGATG 3 cut(s) 830, 1032, 1475
BseLI CCNNNNNNNGG 4 cut(s) 472, 818, 846, 1242
BseMI GCAATG 1 cut(s) 1786
BseMII CTCAG 1 cut(s) 396
BseNI ACTGG 4 cut(s) 316, 892, 1256, 1479
BseRI GAGGAG 1 cut(s) 908
BseXI GCAGC 7 cut(s) 52, 352, 355, 647, 998, 1141, 1427
BseYI CCCAGC 1 cut(s) 1202
Bsh1236I CGCG 1 cut(s) 1008
BshFI GGCC 6 cut(s) 5, 315, 337, 907, 952, 1102
BsiHKAI GWGCWC 3 cut(s) 285, 1372, 1524
BsiHKCI CYCGRG 1 cut(s) 1317
BsiSI CCGG 1 cut(s) 141
BslFI GGGAC 2 cut(s) 82, 841
BslI CCNNNNNNNGG 4 cut(s) 472, 818, 846, 1242
BsmAI GTCTC 1 cut(s) 243
BsmFI GGGAC 2 cut(s) 82, 841
BsnI GGCC 6 cut(s) 5, 315, 337, 907, 952, 1102
BsoBI CYCGRG 1 cut(s) 1317
Bsp1286I GDGCHC 3 cut(s) 285, 1372, 1524
Bsp1407I TGTACA 1 cut(s) 58
Bsp143I GATC 5 cut(s) 175, 269, 988, 1342, 1626
BspACI CCGC 6 cut(s) 338, 703, 825, 900, 903, 1008
BspANI GGCC 6 cut(s) 5, 315, 337, 907, 952, 1102
BspCNI CTCAG 1 cut(s) 395
BspFNI CGCG 1 cut(s) 1008
BspLI GGNNCC 1 cut(s) 271
BspMAI CTGCAG 1 cut(s) 932
BspOI GCTAGC 1 cut(s) 1797
BspPI GGATC 3 cut(s) 264, 277, 983
BsrBI CCGCTC 1 cut(s) 825
BsrDI GCAATG 1 cut(s) 1786
BsrGI TGTACA 1 cut(s) 58
BsrI ACTGG 4 cut(s) 316, 892, 1256, 1479
BssECI CCNNGG 2 cut(s) 141, 317
BssMI GATC 5 cut(s) 175, 269, 988, 1342, 1626
Bst2UI CCWGG 2 cut(s) 835, 972
Bst4CI ACNGT 7 cut(s) 557, 739, 923, 1034, 1181, 1354, 1579
Bst6I CTCTTC 3 cut(s) 191, 1111, 1555
BstAPI GCANNNNNTGC 1 cut(s) 1421
BstAUI TGTACA 1 cut(s) 58
BstC8I GCNNGC 5 cut(s) 27, 195, 511, 905, 1795
BstDEI CTNAG 2 cut(s) 382, 1360
BstF5I GGATG 3 cut(s) 830, 1032, 1475
BstFNI CGCG 1 cut(s) 1008
BstHHI GCGC 2 cut(s) 31, 1008
BstKTI GATC 5 cut(s) 178, 272, 991, 1345, 1629
BstMAI GTCTC 1 cut(s) 243
BstMBI GATC 5 cut(s) 175, 269, 988, 1342, 1626
BstMWI GCNNNNNNNGC 4 cut(s) 74, 368, 972, 1421
BstNI CCWGG 2 cut(s) 835, 972
BstNSI RCATGY 1 cut(s) 65
BstSCI CCNGG 3 cut(s) 140, 833, 970
BstSFI CTRYAG 1 cut(s) 928
BstUI CGCG 1 cut(s) 1008
BstV1I GCAGC 7 cut(s) 52, 352, 355, 647, 998, 1141, 1427
BstV2I GAAGAC 1 cut(s) 661
BstX2I RGATCY 2 cut(s) 269, 988
BstXI CCANNNNNNTGG 1 cut(s) 1486
BstYI RGATCY 2 cut(s) 269, 988
BsuRI GGCC 6 cut(s) 5, 315, 337, 907, 952, 1102
BtsCI GGATG 3 cut(s) 830, 1032, 1475
BtsIMutI CAGTG 2 cut(s) 309, 1575
Cac8I GCNNGC 5 cut(s) 27, 195, 511, 905, 1795
CaiI CAGNNNCTG 1 cut(s) 927
CfoI GCGC 2 cut(s) 31, 1008
Cfr13I GGNCC 5 cut(s) 181, 314, 837, 905, 1101
Csp6I GTAC 3 cut(s) 59, 558, 571
CspCI CAANNNNNGTGG 2 cut(s) 1602, 1637
CviAII CATG 5 cut(s) 62, 373, 909, 1079, 1486
CviQI GTAC 3 cut(s) 59, 558, 571
DdeI CTNAG 2 cut(s) 382, 1360
DpnI GATC 5 cut(s) 177, 271, 990, 1344, 1628
DpnII GATC 5 cut(s) 175, 269, 988, 1342, 1626
DraI TTTAAA 1 cut(s) 547
DrdI GACNNNNNNGTC 1 cut(s) 835
DriI GACNNNNNGTC 1 cut(s) 1760
DseDI GACNNNNNNGTC 1 cut(s) 835
EaeI YGGCCR 1 cut(s) 335
Eam1104I CTCTTC 3 cut(s) 191, 1111, 1555
Eam1105I GACNNNNNGTC 1 cut(s) 1760
EarI CTCTTC 3 cut(s) 191, 1111, 1555
Ecl136II GAGCTC 2 cut(s) 283, 1522
Eco24I GRGCYC 2 cut(s) 285, 1524
Eco47I GGWCC 2 cut(s) 181, 837
Eco53kI GAGCTC 2 cut(s) 283, 1522
Eco88I CYCGRG 1 cut(s) 1317
EcoICRI GAGCTC 2 cut(s) 283, 1522
EcoO109I RGGNCCY 1 cut(s) 181
EcoRI GAATTC 3 cut(s) 409, 649, 1667
EcoRII CCWGG 2 cut(s) 833, 970
EcoT22I ATGCAT 1 cut(s) 1080
EcoT38I GRGCYC 2 cut(s) 285, 1524
FaeI CATG 5 cut(s) 65, 376, 912, 1082, 1489
FalI AAGNNNNNCTT 2 cut(s) 1552, 1584
FaqI GGGAC 2 cut(s) 82, 841
FatI CATG 5 cut(s) 61, 372, 908, 1078, 1485
FauI CCCGC 2 cut(s) 818, 896
FbaI TGATCA 1 cut(s) 175
FokI GGATG 3 cut(s) 817, 1039, 1462
FriOI GRGCYC 2 cut(s) 285, 1524
GlaI GCGC 2 cut(s) 30, 1007
GsaI CCCAGC 1 cut(s) 1206
GsuI CTGGAG 1 cut(s) 909
HaeIII GGCC 6 cut(s) 5, 315, 337, 907, 952, 1102
HapII CCGG 1 cut(s) 141
HhaI GCGC 2 cut(s) 31, 1008
Hin1II CATG 5 cut(s) 65, 376, 912, 1082, 1489
Hin6I GCGC 2 cut(s) 29, 1006
HinP1I GCGC 2 cut(s) 29, 1006
HindIII AAGCTT 1 cut(s) 85
HpaII CCGG 1 cut(s) 141
HphI GGTGA 3 cut(s) 185, 1058, 1670
Hpy166II GTNNAC 2 cut(s) 59, 1040
Hpy188I TCNGA 8 cut(s) 112, 321, 631, 1199, 1294, 1347, 1547, 1721
Hpy188III TCNNGA 7 cut(s) 179, 218, 750, 1301, 1317, 1319, 1630
Hpy8I GTNNAC 2 cut(s) 59, 1040
HpyAV CCTTC 5 cut(s) 16, 886, 1236, 1385, 1736
HpyCH4III ACNGT 7 cut(s) 557, 739, 923, 1034, 1181, 1354, 1579
HpyF10VI GCNNNNNNNGC 4 cut(s) 74, 368, 972, 1421
HpyF3I CTNAG 2 cut(s) 382, 1360
Hsp92II CATG 5 cut(s) 65, 376, 912, 1082, 1489
HspAI GCGC 2 cut(s) 29, 1006
Ksp22I TGATCA 1 cut(s) 175
Kzo9I GATC 5 cut(s) 175, 269, 988, 1342, 1626
LmnI GCTCC 3 cut(s) 280, 822, 1367
Lsp1109I GCAGC 7 cut(s) 52, 352, 355, 647, 998, 1141, 1427
LweI GCATC 8 cut(s) 116, 595, 622, 928, 1017, 1065, 1285, 1322
MaeIII GTNAC 4 cut(s) 386, 718, 923, 1175
MalI GATC 5 cut(s) 177, 271, 990, 1344, 1628
MbiI CCGCTC 1 cut(s) 825
MboI GATC 5 cut(s) 175, 269, 988, 1342, 1626
MfeI CAATTG 1 cut(s) 1419
MflI RGATCY 2 cut(s) 269, 988
MhlI GDGCHC 3 cut(s) 285, 1372, 1524
MlyI GAGTC 5 cut(s) 220, 374, 686, 1599, 1749
MmeI TCCRAC 4 cut(s) 70, 281, 453, 1617
Mph1103I ATGCAT 1 cut(s) 1080
MseI TTAA 1 cut(s) 546
MslI CAYNNNNRTG 1 cut(s) 1035
MspA1I CMGCKG 1 cut(s) 638
MspI CCGG 1 cut(s) 141
MspR9I CCNGG 3 cut(s) 142, 835, 972
MunI CAATTG 1 cut(s) 1419
MvaI CCWGG 2 cut(s) 835, 972
MvnI CGCG 1 cut(s) 1008
MwoI GCNNNNNNNGC 4 cut(s) 74, 368, 972, 1421
NciI CCSGG 1 cut(s) 142
NdeII GATC 5 cut(s) 175, 269, 988, 1342, 1626
NheI GCTAGC 1 cut(s) 1793
NlaIII CATG 5 cut(s) 65, 376, 912, 1082, 1489
NlaIV GGNNCC 1 cut(s) 271
NmeAIII GCCGAG 1 cut(s) 1707
NsiI ATGCAT 1 cut(s) 1080
NspI RCATGY 1 cut(s) 65
OliI CACNNNNGTG 1 cut(s) 1035
PaeR7I CTCGAG 1 cut(s) 1317
PfeI GAWTC 5 cut(s) 214, 881, 1049, 1306, 1322
PflMI CCANNNNNTGG 1 cut(s) 472
PleI GAGTC 5 cut(s) 220, 374, 685, 1598, 1749
PpsI GAGTC 5 cut(s) 220, 374, 685, 1598, 1749
PpuMI RGGWCCY 1 cut(s) 181
Psp124BI GAGCTC 2 cut(s) 285, 1524
Psp5II RGGWCCY 1 cut(s) 181
Psp6I CCWGG 2 cut(s) 833, 970
PspFI CCCAGC 1 cut(s) 1202
PspGI CCWGG 2 cut(s) 833, 970
PspN4I GGNNCC 1 cut(s) 271
PspPI GGNCC 5 cut(s) 181, 314, 837, 905, 1101
PspPPI RGGWCCY 1 cut(s) 181
PstI CTGCAG 1 cut(s) 932
PstNI CAGNNNCTG 1 cut(s) 927
PsuI RGATCY 2 cut(s) 269, 988
PvuII CAGCTG 1 cut(s) 638
RsaI GTAC 3 cut(s) 60, 559, 572
RsaNI GTAC 3 cut(s) 59, 558, 571
RseI CAYNNNNRTG 1 cut(s) 1035
SacI GAGCTC 2 cut(s) 285, 1524
SaqAI TTAA 1 cut(s) 546
Sau3AI GATC 5 cut(s) 175, 269, 988, 1342, 1626
Sau96I GGNCC 5 cut(s) 181, 314, 837, 905, 1101
SchI GAGTC 5 cut(s) 220, 374, 686, 1599, 1749
ScrFI CCNGG 3 cut(s) 142, 835, 972
SduI GDGCHC 3 cut(s) 285, 1372, 1524
SfaNI GCATC 8 cut(s) 116, 595, 622, 928, 1017, 1065, 1285, 1322
SfcI CTRYAG 1 cut(s) 928
Sfr274I CTCGAG 1 cut(s) 1317
SinI GGWCC 2 cut(s) 181, 837
SlaI CTCGAG 1 cut(s) 1317
SmiMI CAYNNNNRTG 1 cut(s) 1035
SmlI CTYRAG 2 cut(s) 563, 1317
SmoI CTYRAG 2 cut(s) 563, 1317
SsiI CCGC 6 cut(s) 338, 703, 825, 900, 903, 1008
SstI GAGCTC 2 cut(s) 285, 1524
StyD4I CCNGG 3 cut(s) 140, 833, 970
TaaI ACNGT 7 cut(s) 557, 739, 923, 1034, 1181, 1354, 1579
TaqI TCGA 4 cut(s) 879, 1167, 1318, 1524
TatI WGTACW 1 cut(s) 58
TauI GCSGC 3 cut(s) 340, 903, 1011
TfiI GAWTC 5 cut(s) 214, 881, 1049, 1306, 1322
Tru1I TTAA 1 cut(s) 546
Tru9I TTAA 1 cut(s) 546
TscAI CASTG 2 cut(s) 316, 1582
TseI GCWGC 7 cut(s) 65, 340, 368, 635, 1011, 1129, 1415
TspDTI ATGAA 2 cut(s) 1155, 1755
TspGWI ACGGA 2 cut(s) 605, 1691
TspRI CASTG 2 cut(s) 316, 1582
Van91I CCANNNNNTGG 1 cut(s) 472
VpaK11BI GGWCC 2 cut(s) 181, 837
XapI RAATTY 4 cut(s) 146, 409, 649, 1667
XbaI TCTAGA 1 cut(s) 1300
XceI RCATGY 1 cut(s) 65
XcmI CCANNNNNNNNNTGG 1 cut(s) 1095
XhoI CTCGAG 1 cut(s) 1317
Zsp2I ATGCAT 1 cut(s) 1080
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.