Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8009002.1

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Forward (+)

143 .. 531

Gene Structure 389 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8009002.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 389 bp

atggcattctcggttctccacttgcttggcctttaccttgtcgtccaaccattttgtgtagctgctgctgctgatcaaactgcaaatataagcttggggtcgtccctaactgcatcagacaactctaaaccgtggcattctccctccggggaatttgcgtatggatttcgccggattggtgatcaggacctcttcttgcttgccatatggtatgacaagataccagaaaagactattgtttggtacgcaaatggagacaatccagcaccaaaaggatccaaagtggagctcacgaaggatggtcatttcaggctcactagccctcggaaagaagatctctggccccagcctgttattagtggagttgcttatgctgccctgcttgactc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

130

Amino Acids

14.25

Weight (kDa)

5.83

Isoelectric Point (pI)

44.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	270, 283
AcsI	RAATTY	1 cut(s)	152
AfaI	GTAC	1 cut(s)	245
AluBI	AGCT	3 cut(s)	62, 93, 289
AluI	AGCT	3 cut(s)	62, 93, 289
Alw21I	GWGCWC	1 cut(s)	291
Alw26I	GTCTC	1 cut(s)	249
AlwI	GGATC	2 cut(s)	270, 283
AoxI	GGCC	2 cut(s)	28, 341
ApeKI	GCWGC	4 cut(s)	62, 65, 68, 374
ApoI	RAATTY	1 cut(s)	152
AspS9I	GGNCC	2 cut(s)	187, 342
AsuC2I	CCSGG	1 cut(s)	148
AsuHPI	GGTGA	1 cut(s)	191
AvaII	GGWCC	1 cut(s)	187
BamHI	GGATCC	1 cut(s)	275
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	4 cut(s)	49, 52, 55, 361
BccI	CCATC	1 cut(s)	293
BclI	TGATCA	2 cut(s)	73, 181
BcnI	CCSGG	1 cut(s)	148
BcoDI	GTCTC	1 cut(s)	249
BfaI	CTAG	1 cut(s)	318
BglII	AGATCT	1 cut(s)	334
BisI	GCNGC	4 cut(s)	63, 66, 69, 375
BlsI	GCNGC	4 cut(s)	64, 67, 70, 376
Bme1390I	CCNGG	1 cut(s)	148
Bme18I	GGWCC	1 cut(s)	187
BmgT120I	GGNCC	2 cut(s)	187, 342
BmiI	GGNNCC	2 cut(s)	277, 344
BmrFI	CCNGG	1 cut(s)	148
BmsI	GCATC	1 cut(s)	122
BpuMI	CCSGG	1 cut(s)	148
BsaJI	CCNNGG	3 cut(s)	131, 147, 323
BseDI	CCNNGG	3 cut(s)	131, 147, 323
BseGI	GGATG	1 cut(s)	304
BseXI	GCAGC	4 cut(s)	49, 52, 55, 361
BseYI	CCCAGC	1 cut(s)	345
BshFI	GGCC	2 cut(s)	30, 343
BsiHKAI	GWGCWC	1 cut(s)	291
BsiSI	CCGG	2 cut(s)	147, 172
BslFI	GGGAC	1 cut(s)	88
BsmAI	GTCTC	1 cut(s)	249
BsmFI	GGGAC	1 cut(s)	88
BsmI	GAATGC	2 cut(s)	5, 136
BsnI	GGCC	2 cut(s)	30, 343
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	4 cut(s)	73, 181, 275, 334
BspANI	GGCC	2 cut(s)	30, 343
BspLI	GGNNCC	2 cut(s)	277, 344
BspPI	GGATC	2 cut(s)	270, 283
BssECI	CCNNGG	3 cut(s)	131, 147, 323
BssMI	GATC	4 cut(s)	73, 181, 275, 334
Bst4CI	ACNGT	1 cut(s)	132
Bst6I	CTCTTC	1 cut(s)	197
BstC8I	GCNNGC	1 cut(s)	201
BstDSI	CCRYGG	1 cut(s)	131
BstF5I	GGATG	1 cut(s)	304
BstKTI	GATC	4 cut(s)	76, 184, 278, 337
BstMAI	GTCTC	1 cut(s)	249
BstMBI	GATC	4 cut(s)	73, 181, 275, 334
BstMWI	GCNNNNNNNGC	2 cut(s)	68, 374
BstSCI	CCNGG	1 cut(s)	146
BstV1I	GCAGC	4 cut(s)	49, 52, 55, 361
BstX2I	RGATCY	2 cut(s)	275, 334
BstXI	CCANNNNNNTGG	1 cut(s)	26
BstYI	RGATCY	2 cut(s)	275, 334
BsuRI	GGCC	2 cut(s)	30, 343
BtgI	CCRYGG	1 cut(s)	131
BtsCI	GGATG	1 cut(s)	304
Cac8I	GCNNGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	187, 342
Csp6I	GTAC	1 cut(s)	244
CviJI	RGCY	8 cut(s)	30, 62, 93, 289, 313, 321, 343, 349
CviKI_1	RGCY	8 cut(s)	30, 62, 93, 289, 313, 321, 343, 349
CviQI	GTAC	1 cut(s)	244
DpnI	GATC	4 cut(s)	75, 183, 277, 336
DpnII	GATC	4 cut(s)	73, 181, 275, 334
Eam1104I	CTCTTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	197
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	187
Eco53kI	GAGCTC	1 cut(s)	289
EcoICRI	GAGCTC	1 cut(s)	289
EcoO109I	RGGNCCY	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	6 cut(s)	89, 162, 206, 208, 213, 372
FaqI	GGGAC	1 cut(s)	88
FauNDI	CATATG	1 cut(s)	206
FbaI	TGATCA	2 cut(s)	73, 181
Fnu4HI	GCNGC	4 cut(s)	63, 66, 69, 375
FokI	GGATG	1 cut(s)	311
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	4 cut(s)	63, 66, 69, 375
FspBI	CTAG	1 cut(s)	318
GluI	GCNGC	4 cut(s)	63, 66, 69, 375
GsaI	CCCAGC	1 cut(s)	349
HaeIII	GGCC	2 cut(s)	30, 343
HapII	CCGG	2 cut(s)	147, 172
HindIII	AAGCTT	1 cut(s)	91
HinfI	GANTC	1 cut(s)	386
HpaII	CCGG	2 cut(s)	147, 172
HphI	GGTGA	1 cut(s)	191
Hpy188I	TCNGA	2 cut(s)	118, 327
Hpy188III	TCNNGA	2 cut(s)	185, 292
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	83, 113
HpyF10VI	GCNNNNNNNGC	2 cut(s)	68, 374
Ksp22I	TGATCA	2 cut(s)	73, 181
Kzo9I	GATC	4 cut(s)	73, 181, 275, 334
LmnI	GCTCC	1 cut(s)	286
LpnPI	CCDG	9 cut(s)	160, 170, 185, 237, 276, 295, 325, 359, 363
Lsp1109I	GCAGC	4 cut(s)	49, 52, 55, 361
LweI	GCATC	1 cut(s)	122
MaeI	CTAG	1 cut(s)	318
MalI	GATC	4 cut(s)	75, 183, 277, 336
MboI	GATC	4 cut(s)	73, 181, 275, 334
MboII	GAAGA	2 cut(s)	184, 344
MflI	RGATCY	2 cut(s)	275, 334
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	1 cut(s)	152
MlyI	GAGTC	1 cut(s)	380
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	3 cut(s)	154, 200, 333
MspI	CCGG	2 cut(s)	147, 172
MspR9I	CCNGG	1 cut(s)	148
Mva1269I	GAATGC	2 cut(s)	5, 136
MwoI	GCNNNNNNNGC	2 cut(s)	68, 374
NciI	CCSGG	1 cut(s)	148
NdeI	CATATG	1 cut(s)	206
NdeII	GATC	4 cut(s)	73, 181, 275, 334
NlaIV	GGNNCC	2 cut(s)	277, 344
PctI	GAATGC	2 cut(s)	5, 136
PkrI	GCNGC	4 cut(s)	64, 67, 70, 376
PleI	GAGTC	1 cut(s)	380
PpsI	GAGTC	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	187
Psp124BI	GAGCTC	1 cut(s)	291
Psp5II	RGGWCCY	1 cut(s)	187
PspFI	CCCAGC	1 cut(s)	345
PspN4I	GGNNCC	2 cut(s)	277, 344
PspPI	GGNCC	2 cut(s)	187, 342
PspPPI	RGGWCCY	1 cut(s)	187
PsuI	RGATCY	2 cut(s)	275, 334
RsaI	GTAC	1 cut(s)	245
RsaNI	GTAC	1 cut(s)	244
SacI	GAGCTC	1 cut(s)	291
SatI	GCNGC	4 cut(s)	63, 66, 69, 375
Sau3AI	GATC	4 cut(s)	73, 181, 275, 334
Sau96I	GGNCC	2 cut(s)	187, 342
SchI	GAGTC	1 cut(s)	380
ScrFI	CCNGG	1 cut(s)	148
SduI	GDGCHC	1 cut(s)	291
SetI	ASST	5 cut(s)	39, 64, 95, 192, 291
SfaNI	GCATC	1 cut(s)	122
SinI	GGWCC	1 cut(s)	187
Sse9I	AATT	1 cut(s)	152
SspMI	CTAG	1 cut(s)	318
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	146
TaaI	ACNGT	1 cut(s)	132
TasI	AATT	1 cut(s)	152
TseI	GCWGC	4 cut(s)	62, 65, 68, 374
VpaK11BI	GGWCC	1 cut(s)	187
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	1 cut(s)	318

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.