Rorug01G0374800

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001175
Physical Location & Seq
Reverse (-)
48886859 .. 48887809
951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0374800.1

Sequence Viewer

Length: 741 bp
ATGCCAATCTCACAAGTCCTCTGTTTCCTCTGCTTCCTCATCTCCCTCTCCTTCACTGATGGGACTCAACTCATCATAGTGAACAACTGCAAGGAGAGCATATGGCCGGGGATCCTCGGCACTGCAGGCCACCTGACTCCTCAAGACGGCGGCTTCCATCTCCCCAGCGGCCAGCAACTCCTCCTTGACGTCCCTGAGAACTGGTCCGGAAGAATTTGGGGGAGGCAAGGCTGCTGCTTTGATCCAAGCACTGGCAAGGGCTCGTGCCTAACCGGTGGTTGCGCCGGGCTCTTACAATGTAGGGGACTCGGTGGAGTCCCCCCTGCCACACTCGTCGAAATGACACTCGGAACTCCTAAATCCGCCTTGCATTTCTACGATGTGAGCTTGGTTGATGGTTTCAACGTTCCCATTTCCATGGTGCCGATTGGTGGTGGTGTTGGATGTGGTGTTGCTGCTTGTGAGACTGACTTGAATGTATGCTGTCCCCTTGCCTTGGTGGTCAAGAAACAAGGTCGGGTTGTGGGTTGTAAGAGTGCTTGTTTGGCTGCAAAGACAGATAGGTATTGCTGTACTGGGGAGTTTGCAGATCCAAAGAGTTGTAAGCCTAGTGTTTTTGGGCATCTTTTTAAGGCTATTTGTCCCAAGGCTTATAGTTATGCCTTTGATGACTCTACAGGGCTCAAGACCTGTGTGGCTCCTAGGTATGTCATCACATTTTGTCCCCCTAACTTGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

246

Amino Acids

25.82

Weight (kDa)

7.77

Isoelectric Point (pI)

37.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Thaumatin PF00314 28 - 242 2.2e-78 Thaumatin family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 192
AccB1I GGYRCC 1 cut(s) 421
AccB7I CCANNNNNTGG 1 cut(s) 251
AccIII TCCGGA 1 cut(s) 206
AciI CCGC 3 cut(s) 150, 168, 363
AclI AACGTT 1 cut(s) 405
AclWI GGATC 4 cut(s) 106, 119, 236, 584
AcoI YGGCCR 2 cut(s) 104, 169
AcsI RAATTY 1 cut(s) 213
AcyI GRCGYC 1 cut(s) 189
AfaI GTAC 1 cut(s) 574
AfiI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
AgeI ACCGGT 1 cut(s) 272
AgsI TTSAA 2 cut(s) 403, 475
AluBI AGCT 1 cut(s) 387
AluI AGCT 1 cut(s) 387
Alw26I GTCTC 1 cut(s) 458
AlwI GGATC 4 cut(s) 106, 119, 236, 584
Aor13HI TCCGGA 1 cut(s) 206
AoxI GGCC 3 cut(s) 104, 127, 169
ApeKI GCWGC 4 cut(s) 231, 234, 455, 548
ApoI RAATTY 1 cut(s) 213
AsiGI ACCGGT 1 cut(s) 272
AspA2I CCTAGG 1 cut(s) 701
AspLEI GCGC 1 cut(s) 284
AspS9I GGNCC 1 cut(s) 204
AsuC2I CCSGG 2 cut(s) 108, 286
AvaII GGWCC 1 cut(s) 204
AvrII CCTAGG 1 cut(s) 701
BamHI GGATCC 1 cut(s) 111
BanI GGYRCC 1 cut(s) 421
BanII GRGCYC 3 cut(s) 263, 291, 684
BauI CACGAG 1 cut(s) 262
BbvI GCAGC 4 cut(s) 218, 221, 442, 535
BccI CCATC 3 cut(s) 53, 165, 389
BceAI ACGGC 1 cut(s) 163
BcnI CCSGG 2 cut(s) 108, 286
BcoDI GTCTC 1 cut(s) 458
BfaI CTAG 2 cut(s) 609, 702
BfmI CTRYAG 2 cut(s) 123, 675
BisI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
BlnI CCTAGG 1 cut(s) 701
BlsI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
Bme1390I CCNGG 2 cut(s) 108, 286
Bme18I GGWCC 1 cut(s) 204
BmgT120I GGNCC 1 cut(s) 204
BmiI GGNNCC 3 cut(s) 113, 423, 699
BmrFI CCNGG 2 cut(s) 108, 286
BmrI ACTGGG 1 cut(s) 585
BmsI GCATC 1 cut(s) 631
BmuI ACTGGG 1 cut(s) 585
BpuEI CTTGAG 2 cut(s) 126, 668
BpuMI CCSGG 2 cut(s) 108, 286
BsaHI GRCGYC 1 cut(s) 189
BsaJI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BsaWI WCCGGW 2 cut(s) 206, 272
Bsc4I CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
Bse118I RCCGGY 1 cut(s) 272
Bse1I ACTGG 3 cut(s) 206, 256, 580
BseAI TCCGGA 1 cut(s) 206
BseDI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BseMII CTCAG 1 cut(s) 186
BseNI ACTGG 3 cut(s) 206, 256, 580
BseRI GAGGAG 2 cut(s) 129, 170
BseXI GCAGC 4 cut(s) 218, 221, 442, 535
BseYI CCCAGC 1 cut(s) 164
BshFI GGCC 3 cut(s) 106, 129, 171
BshNI GGYRCC 1 cut(s) 421
BshTI ACCGGT 1 cut(s) 272
BsiSI CCGG 4 cut(s) 107, 207, 273, 285
BslFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BslI CCNNNNNNNGG 6 cut(s) 146, 251, 431, 496, 733, 734
BsmAI GTCTC 1 cut(s) 458
BsmFI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
BsnI GGCC 3 cut(s) 106, 129, 171
Bsp1286I GDGCHC 3 cut(s) 263, 291, 684
Bsp13I TCCGGA 1 cut(s) 206
Bsp143I GATC 3 cut(s) 111, 241, 589
Bsp19I CCATGG 1 cut(s) 417
BspACI CCGC 3 cut(s) 150, 168, 363
BspANI GGCC 3 cut(s) 106, 129, 171
BspCNI CTCAG 1 cut(s) 187
BspEI TCCGGA 1 cut(s) 206
BspLI GGNNCC 3 cut(s) 113, 423, 699
BspMAI CTGCAG 1 cut(s) 127
BspPI GGATC 4 cut(s) 106, 119, 236, 584
BspT107I GGYRCC 1 cut(s) 421
BsrFI RCCGGY 1 cut(s) 272
BsrI ACTGG 3 cut(s) 206, 256, 580
BssAI RCCGGY 1 cut(s) 272
BssECI CCNNGG 6 cut(s) 107, 115, 417, 495, 645, 701
BssMI GATC 3 cut(s) 111, 241, 589
BssNI GRCGYC 1 cut(s) 189
BssSI CACGAG 1 cut(s) 262
BssT1I CCWWGG 4 cut(s) 417, 495, 645, 701
Bst2BI CACGAG 1 cut(s) 262
BstACI GRCGYC 1 cut(s) 189
BstC8I GCNNGC 2 cut(s) 127, 173
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 417
BstF5I GGATG 1 cut(s) 449
BstHHI GCGC 1 cut(s) 284
BstKTI GATC 3 cut(s) 114, 244, 592
BstMAI GTCTC 1 cut(s) 458
BstMBI GATC 3 cut(s) 111, 241, 589
BstMWI GCNNNNNNNGC 3 cut(s) 96, 126, 545
BstSCI CCNGG 2 cut(s) 106, 284
BstSFI CTRYAG 2 cut(s) 123, 675
BstV1I GCAGC 4 cut(s) 218, 221, 442, 535
BstX2I RGATCY 2 cut(s) 111, 589
BstXI CCANNNNNNTGG 1 cut(s) 418
BstYI RGATCY 2 cut(s) 111, 589
BsuRI GGCC 3 cut(s) 106, 129, 171
BtgI CCRYGG 1 cut(s) 417
BtsCI GGATG 1 cut(s) 449
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 3 cut(s) 54, 120, 249
Cac8I GCNNGC 2 cut(s) 127, 173
CfoI GCGC 1 cut(s) 284
Cfr10I RCCGGY 1 cut(s) 272
Cfr13I GGNCC 1 cut(s) 204
Csp6I GTAC 1 cut(s) 573
CspAI ACCGGT 1 cut(s) 272
CviAII CATG 1 cut(s) 418
CviQI GTAC 1 cut(s) 573
DdeI CTNAG 1 cut(s) 195
DpnI GATC 3 cut(s) 113, 243, 591
DpnII GATC 3 cut(s) 111, 241, 589
EaeI YGGCCR 2 cut(s) 104, 169
EciI GGCGGA 1 cut(s) 352
Eco130I CCWWGG 4 cut(s) 417, 495, 645, 701
Eco24I GRGCYC 3 cut(s) 263, 291, 684
Eco47I GGWCC 1 cut(s) 204
EcoT14I CCWWGG 4 cut(s) 417, 495, 645, 701
EcoT38I GRGCYC 3 cut(s) 263, 291, 684
ErhI CCWWGG 4 cut(s) 417, 495, 645, 701
FaeI CATG 1 cut(s) 421
FaiI YATR 8 cut(s) 77, 101, 103, 419, 481, 654, 660, 708
FaqI GGGAC 7 cut(s) 76, 176, 302, 318, 471, 627, 708
FatI CATG 1 cut(s) 417
FauNDI CATATG 1 cut(s) 101
Fnu4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FokI GGATG 1 cut(s) 456
FriOI GRGCYC 3 cut(s) 263, 291, 684
Fsp4HI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
FspBI CTAG 2 cut(s) 609, 702
GlaI GCGC 1 cut(s) 283
GluI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
GsaI CCCAGC 1 cut(s) 168
HaeIII GGCC 3 cut(s) 106, 129, 171
HapII CCGG 4 cut(s) 107, 207, 273, 285
HhaI GCGC 1 cut(s) 284
Hin1I GRCGYC 1 cut(s) 189
Hin1II CATG 1 cut(s) 421
Hin6I GCGC 1 cut(s) 282
HinP1I GCGC 1 cut(s) 282
HinfI GANTC 5 cut(s) 64, 136, 306, 315, 671
HpaII CCGG 4 cut(s) 107, 207, 273, 285
Hpy166II GTNNAC 1 cut(s) 82
Hpy188I TCNGA 1 cut(s) 350
Hpy188III TCNNGA 4 cut(s) 143, 207, 505, 685
Hpy8I GTNNAC 1 cut(s) 82
Hpy99I CGWCG 1 cut(s) 338
HpyAV CCTTC 1 cut(s) 61
HpyCH4IV ACGT 2 cut(s) 189, 405
HpyCH4V TGCA 5 cut(s) 90, 125, 370, 551, 587
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 126, 545
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 2 cut(s) 189, 405
Hsp92I GRCGYC 1 cut(s) 189
Hsp92II CATG 1 cut(s) 421
HspAI GCGC 1 cut(s) 282
Kpn2I TCCGGA 1 cut(s) 206
Kzo9I GATC 3 cut(s) 111, 241, 589
LmnI GCTCC 1 cut(s) 703
Lsp1109I GCAGC 4 cut(s) 218, 221, 442, 535
LweI GCATC 1 cut(s) 631
MaeI CTAG 2 cut(s) 609, 702
MaeII ACGT 2 cut(s) 189, 405
MalI GATC 3 cut(s) 113, 243, 591
MboI GATC 3 cut(s) 111, 241, 589
MboII GAAGA 1 cut(s) 222
MflI RGATCY 2 cut(s) 111, 589
MhlI GDGCHC 3 cut(s) 263, 291, 684
MluCI AATT 1 cut(s) 213
MlyI GAGTC 5 cut(s) 58, 130, 300, 324, 665
MmeI TCCRAC 1 cut(s) 421
MnlI CCTC 8 cut(s) 29, 38, 47, 56, 125, 150, 191, 216
MroI TCCGGA 1 cut(s) 206
MseI TTAA 1 cut(s) 630
MslI CAYNNNNRTG 2 cut(s) 77, 416
MspA1I CMGCKG 1 cut(s) 168
MspI CCGG 4 cut(s) 107, 207, 273, 285
MspR9I CCNGG 2 cut(s) 108, 286
MwoI GCNNNNNNNGC 3 cut(s) 96, 126, 545
NciI CCSGG 2 cut(s) 108, 286
NcoI CCATGG 1 cut(s) 417
NdeI CATATG 1 cut(s) 101
NdeII GATC 3 cut(s) 111, 241, 589
NlaIII CATG 1 cut(s) 421
NlaIV GGNNCC 3 cut(s) 113, 423, 699
NmeAIII GCCGAG 1 cut(s) 96
PflMI CCANNNNNTGG 1 cut(s) 251
PinAI ACCGGT 1 cut(s) 272
PkrI GCNGC 6 cut(s) 152, 170, 233, 236, 457, 550
PleI GAGTC 5 cut(s) 58, 130, 300, 323, 665
PpsI GAGTC 5 cut(s) 58, 130, 300, 323, 665
Psp1406I AACGTT 1 cut(s) 405
PspFI CCCAGC 1 cut(s) 164
PspN4I GGNNCC 3 cut(s) 113, 423, 699
PspPI GGNCC 1 cut(s) 204
PstI CTGCAG 1 cut(s) 127
PsuI RGATCY 2 cut(s) 111, 589
RsaI GTAC 1 cut(s) 574
RsaNI GTAC 1 cut(s) 573
RseI CAYNNNNRTG 2 cut(s) 77, 416
SaqAI TTAA 1 cut(s) 630
SatI GCNGC 6 cut(s) 151, 169, 232, 235, 456, 549
Sau3AI GATC 3 cut(s) 111, 241, 589
Sau96I GGNCC 1 cut(s) 204
SchI GAGTC 5 cut(s) 58, 130, 300, 324, 665
ScrFI CCNGG 2 cut(s) 108, 286
SduI GDGCHC 3 cut(s) 263, 291, 684
SetI ASST 8 cut(s) 135, 192, 389, 408, 517, 566, 692, 707
SfaNI GCATC 1 cut(s) 631
SfcI CTRYAG 2 cut(s) 123, 675
SinI GGWCC 1 cut(s) 204
SmiMI CAYNNNNRTG 2 cut(s) 77, 416
SmlI CTYRAG 2 cut(s) 141, 683
SmoI CTYRAG 2 cut(s) 141, 683
Sse9I AATT 1 cut(s) 213
SsiI CCGC 3 cut(s) 150, 168, 363
SspMI CTAG 2 cut(s) 609, 702
StyD4I CCNGG 2 cut(s) 106, 284
StyI CCWWGG 4 cut(s) 417, 495, 645, 701
TaiI ACGT 2 cut(s) 192, 408
TaqI TCGA 1 cut(s) 336
TasI AATT 1 cut(s) 213
TatI WGTACW 1 cut(s) 572
TauI GCSGC 2 cut(s) 153, 171
Tru1I TTAA 1 cut(s) 630
Tru9I TTAA 1 cut(s) 630
TscAI CASTG 3 cut(s) 61, 127, 256
TseI GCWGC 4 cut(s) 231, 234, 455, 548
TspRI CASTG 3 cut(s) 61, 127, 256
Van91I CCANNNNNTGG 1 cut(s) 251
VpaK11BI GGWCC 1 cut(s) 204
XapI RAATTY 1 cut(s) 213
XmaJI CCTAGG 1 cut(s) 701
XspI CTAG 2 cut(s) 609, 702
ZraI GACGTC 1 cut(s) 190
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.