RchiOBHm_Chr1g0313501

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001175
Physical Location & Seq
Reverse (-)
550927 .. 551715
789 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ54431

Sequence Viewer

Length: 789 bp
ATGCACAGTTGTGAACTAGGTGATTCAAAGCCACAAGATGTATATGTGATGCATGAGCTACCAAATACTTTCTGGCCCTCTTCTTCAAACTTTGAAGTATTGCAGCAACTCAATGAAGATGATTGTAGGAGGTCTTGCCTCGATGATTGTAACTGTGTGGTAGCAACTATCAGAGCTGGGAGGTGCTGGAAGAAGAAACTGCCACTCTCCAATGGAAGGCAGGACTGGAATGAGTATGGCAAGGCTCTCATCAAATTACCAAAATCTGATGCTCTAGAGAATCCTGCATCTCGAGATTCAAACACAGAAAAGAAAGATCAGAAAACTGTCATCTTAGTAGGAGCACTCCTTCTAGGTAGCTCTGTGTTTATCAACTTCCTATTGGTTGCAGCAATTGCTTTTCTTGTTTTCTATACATACCGAAAAACACATAGGGTTATCACTAGCACATCCAGTATCATGGAAGCAAATCTACTCGCTTTTACTTACAAAGAGCTCGAAGAAGCCACAGATGGTTTCAGAGAAGAACTTGGAAGAGGGGCTTTCGGCACTGTGTATAAGGGAGTCATATCATCTCCAAGCTCAACAAACTATGTGGCGATCAAGAAGTTGGACAAGGTGGAACAACAAGGTGAAAAGGAATTCAAAACGGAAGTGAGTGCAATAGCCAAGACCCATCACAAAAACCTCGTCAGACTGCTCGGCTTGTGTGATGAAGGGGCAAATAGACTCCTAGTCTATGAGTTTATGAGCAATGGAACACTAGCTAGCTTTCTGTTTGGGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

262

Amino Acids

29.34

Weight (kDa)

6.95

Isoelectric Point (pI)

39.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PAN_2 PF08276 16 - 63 2.4e-06 PAN-like domain
PK_Tyr_Ser-Thr PF07714 173 - 259 1.4e-18 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 175 - 258 1e-13 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 641
AfiI CCNNNNNNNGG 1 cut(s) 216
AgsI TTSAA 5 cut(s) 27, 87, 95, 300, 646
AhdI GACNNNNNGTC 1 cut(s) 734
AleI CACNNNNGTG 1 cut(s) 9
AluBI AGCT 7 cut(s) 58, 176, 360, 496, 582, 767, 771
AluI AGCT 7 cut(s) 58, 176, 360, 496, 582, 767, 771
Alw21I GWGCWC 2 cut(s) 346, 498
Ama87I CYCGRG 1 cut(s) 291
AoxI GGCC 1 cut(s) 74
ApeKI GCWGC 2 cut(s) 103, 389
ApoI RAATTY 1 cut(s) 641
ArsI GACNNNNNNTTYG 2 cut(s) 675, 707
AspS9I GGNCC 1 cut(s) 75
AsuHPI GGTGA 2 cut(s) 32, 644
AsuNHI GCTAGC 1 cut(s) 767
AvaI CYCGRG 1 cut(s) 291
BanII GRGCYC 1 cut(s) 498
BarI GAAGNNNNNNTAC 2 cut(s) 456, 488
Bbv12I GWGCWC 2 cut(s) 346, 498
BbvI GCAGC 2 cut(s) 115, 401
BccI CCATC 2 cut(s) 506, 684
BfaI CTAG 7 cut(s) 17, 275, 353, 444, 734, 764, 768
BisI GCNGC 2 cut(s) 104, 390
BlsI GCNGC 2 cut(s) 105, 391
BmeRI GACNNNNNGTC 1 cut(s) 734
BmeT110I CYCGRG 1 cut(s) 291
BmgT120I GGNCC 1 cut(s) 75
BmsI GCATC 3 cut(s) 39, 259, 296
BmtI GCTAGC 1 cut(s) 771
Bsc4I CCNNNNNNNGG 1 cut(s) 216
Bse1I ACTGG 2 cut(s) 230, 453
Bse3DI GCAATG 1 cut(s) 760
BseGI GGATG 1 cut(s) 449
BseLI CCNNNNNNNGG 1 cut(s) 216
BseMI GCAATG 1 cut(s) 760
BseNI ACTGG 2 cut(s) 230, 453
BseXI GCAGC 2 cut(s) 115, 401
BseYI CCCAGC 1 cut(s) 176
BshFI GGCC 1 cut(s) 76
BsiHKAI GWGCWC 2 cut(s) 346, 498
BsiHKCI CYCGRG 1 cut(s) 291
BslI CCNNNNNNNGG 1 cut(s) 216
BsnI GGCC 1 cut(s) 76
BsoBI CYCGRG 1 cut(s) 291
Bsp1286I GDGCHC 2 cut(s) 346, 498
Bsp143I GATC 2 cut(s) 316, 600
BspANI GGCC 1 cut(s) 76
BspOI GCTAGC 1 cut(s) 771
BsrDI GCAATG 1 cut(s) 760
BsrI ACTGG 2 cut(s) 230, 453
BssMI GATC 2 cut(s) 316, 600
Bst4CI ACNGT 4 cut(s) 8, 155, 328, 553
Bst6I CTCTTC 2 cut(s) 85, 529
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 1 cut(s) 334
BstF5I GGATG 1 cut(s) 449
BstKTI GATC 2 cut(s) 319, 603
BstMBI GATC 2 cut(s) 316, 600
BstMWI GCNNNNNNNGC 1 cut(s) 395
BstV1I GCAGC 2 cut(s) 115, 401
BstXI CCANNNNNNTGG 1 cut(s) 460
BsuRI GGCC 1 cut(s) 76
BtsCI GGATG 1 cut(s) 449
BtsIMutI CAGTG 1 cut(s) 549
Cac8I GCNNGC 1 cut(s) 769
Cfr13I GGNCC 1 cut(s) 75
CspCI CAANNNNNGTGG 2 cut(s) 576, 611
CviAII CATG 2 cut(s) 53, 460
DdeI CTNAG 1 cut(s) 334
DpnI GATC 2 cut(s) 318, 602
DpnII GATC 2 cut(s) 316, 600
DriI GACNNNNNGTC 1 cut(s) 734
Eam1104I CTCTTC 2 cut(s) 85, 529
Eam1105I GACNNNNNGTC 1 cut(s) 734
EarI CTCTTC 2 cut(s) 85, 529
Ecl136II GAGCTC 1 cut(s) 496
Eco24I GRGCYC 1 cut(s) 498
Eco53kI GAGCTC 1 cut(s) 496
Eco88I CYCGRG 1 cut(s) 291
EcoICRI GAGCTC 1 cut(s) 496
EcoRI GAATTC 1 cut(s) 641
EcoT22I ATGCAT 1 cut(s) 54
EcoT38I GRGCYC 1 cut(s) 498
FaeI CATG 2 cut(s) 56, 463
FalI AAGNNNNNCTT 2 cut(s) 526, 558
FatI CATG 2 cut(s) 52, 459
Fnu4HI GCNGC 2 cut(s) 104, 390
FokI GGATG 1 cut(s) 436
FriOI GRGCYC 1 cut(s) 498
Fsp4HI GCNGC 2 cut(s) 104, 390
FspBI CTAG 7 cut(s) 17, 275, 353, 444, 734, 764, 768
GluI GCNGC 2 cut(s) 104, 390
GsaI CCCAGC 1 cut(s) 180
HaeIII GGCC 1 cut(s) 76
Hin1II CATG 2 cut(s) 56, 463
HinfI GANTC 5 cut(s) 23, 280, 296, 564, 729
HphI GGTGA 2 cut(s) 32, 644
Hpy166II GTNNAC 1 cut(s) 14
Hpy188I TCNGA 5 cut(s) 173, 268, 321, 521, 695
Hpy188III TCNNGA 4 cut(s) 275, 291, 293, 604
Hpy8I GTNNAC 1 cut(s) 14
HpyAV CCTTC 3 cut(s) 210, 359, 710
HpyCH4III ACNGT 4 cut(s) 8, 155, 328, 553
HpyCH4V TGCA 6 cut(s) 4, 52, 103, 287, 389, 662
HpyF10VI GCNNNNNNNGC 1 cut(s) 395
HpyF3I CTNAG 1 cut(s) 334
Hsp92II CATG 2 cut(s) 56, 463
Kzo9I GATC 2 cut(s) 316, 600
LmnI GCTCC 1 cut(s) 341
LpnPI CCDG 7 cut(s) 58, 162, 172, 206, 211, 297, 466
Lsp1109I GCAGC 2 cut(s) 115, 401
LweI GCATC 3 cut(s) 39, 259, 296
MaeI CTAG 7 cut(s) 17, 275, 353, 444, 734, 764, 768
MaeIII GTNAC 1 cut(s) 149
MalI GATC 2 cut(s) 318, 602
MboI GATC 2 cut(s) 316, 600
MboII GAAGA 8 cut(s) 72, 75, 128, 202, 205, 512, 536, 546
MfeI CAATTG 1 cut(s) 393
MhlI GDGCHC 2 cut(s) 346, 498
MluCI AATT 3 cut(s) 254, 393, 641
MlyI GAGTC 2 cut(s) 573, 723
MmeI TCCRAC 1 cut(s) 591
MnlI CCTC 6 cut(s) 88, 123, 149, 174, 530, 698
Mph1103I ATGCAT 1 cut(s) 54
MslI CAYNNNNRTG 1 cut(s) 9
MunI CAATTG 1 cut(s) 393
MwoI GCNNNNNNNGC 1 cut(s) 395
NdeII GATC 2 cut(s) 316, 600
NheI GCTAGC 1 cut(s) 767
NlaIII CATG 2 cut(s) 56, 463
NmeAIII GCCGAG 1 cut(s) 681
NsiI ATGCAT 1 cut(s) 54
OliI CACNNNNGTG 1 cut(s) 9
PaeR7I CTCGAG 1 cut(s) 291
PfeI GAWTC 3 cut(s) 23, 280, 296
PkrI GCNGC 2 cut(s) 105, 391
PleI GAGTC 2 cut(s) 572, 723
PpsI GAGTC 2 cut(s) 572, 723
Psp124BI GAGCTC 1 cut(s) 498
PspFI CCCAGC 1 cut(s) 176
PspPI GGNCC 1 cut(s) 75
RseI CAYNNNNRTG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 498
SatI GCNGC 2 cut(s) 104, 390
Sau3AI GATC 2 cut(s) 316, 600
Sau96I GGNCC 1 cut(s) 75
SchI GAGTC 2 cut(s) 573, 723
SduI GDGCHC 2 cut(s) 346, 498
SfaNI GCATC 3 cut(s) 39, 259, 296
Sfr274I CTCGAG 1 cut(s) 291
SlaI CTCGAG 1 cut(s) 291
SmiMI CAYNNNNRTG 1 cut(s) 9
SmlI CTYRAG 1 cut(s) 291
SmoI CTYRAG 1 cut(s) 291
Sse9I AATT 3 cut(s) 254, 393, 641
SspMI CTAG 7 cut(s) 17, 275, 353, 444, 734, 764, 768
SstI GAGCTC 1 cut(s) 498
TaaI ACNGT 4 cut(s) 8, 155, 328, 553
TaqI TCGA 3 cut(s) 141, 292, 498
TasI AATT 3 cut(s) 254, 393, 641
TfiI GAWTC 3 cut(s) 23, 280, 296
TscAI CASTG 1 cut(s) 556
TseI GCWGC 2 cut(s) 103, 389
TspDTI ATGAA 2 cut(s) 129, 729
TspGWI ACGGA 1 cut(s) 665
TspRI CASTG 1 cut(s) 556
XapI RAATTY 1 cut(s) 641
XbaI TCTAGA 1 cut(s) 274
XcmI CCANNNNNNNNNTGG 1 cut(s) 69
XhoI CTCGAG 1 cut(s) 291
XspI CTAG 7 cut(s) 17, 275, 353, 444, 734, 764, 768
Zsp2I ATGCAT 1 cut(s) 54
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.