Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

646768 .. 647493

Gene Structure 726 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ54437

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGCACTCTGCTGGAAAACATGAAGGTTTTTCAAGGCCCGCAAACAAGTCGCCTGAAATGCCTCGTAGAAGCCCACCCCCACCACCTTCAGTGGGAGAATCAGCTAGAAATCCATCACAAACGTCAAATATGTCCAAGGCAGGGGGAGGTGGAGGGCCACTTGGTGCATTTTGGTCCACTCAGCATGCTGAGGATTCAGTTGTTGTTGAAGAAAAGACTGCACCTAAGTTTGATGATTCTAATCATCCTTTACCCAAGAACAGTGCCCCTGCAAAAGTGGAAAATACACCAACCTATGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

101

Amino Acids

10.57

Weight (kDa)

8.11

Isoelectric Point (pI)

87.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	39
AcuI	CTGAAG	1 cut(s)	72
AdeI	CACNNNGTG	1 cut(s)	164
AfiI	CCNNNNNNNGG	2 cut(s)	92, 141
AgsI	TTSAA	2 cut(s)	33, 209
AluBI	AGCT	1 cut(s)	104
AluI	AGCT	1 cut(s)	104
AoxI	GGCC	2 cut(s)	35, 155
ApeKI	GCWGC	1 cut(s)	299
AspS9I	GGNCC	3 cut(s)	36, 155, 174
AvaII	GGWCC	1 cut(s)	174
BaeGI	GKGCMC	1 cut(s)	268
BbvCI	CCTCAGC	1 cut(s)	189
BbvI	GCAGC	1 cut(s)	286
BccI	CCATC	1 cut(s)	121
BcgI	CGANNNNNNTGC	2 cut(s)	30, 64
BfaI	CTAG	1 cut(s)	105
BisI	GCNGC	1 cut(s)	300
BlsI	GCNGC	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	174
BmgT120I	GGNCC	3 cut(s)	36, 155, 174
Bpu10I	CCTNAGC	1 cut(s)	189
BsaBI	GATNNNNATC	1 cut(s)	240
BsaJI	CCNNGG	1 cut(s)	135
Bsc4I	CCNNNNNNNGG	2 cut(s)	92, 141
Bse8I	GATNNNNATC	1 cut(s)	240
BseDI	CCNNGG	1 cut(s)	135
BseGI	GGATG	1 cut(s)	244
BseJI	GATNNNNATC	1 cut(s)	240
BseLI	CCNNNNNNNGG	2 cut(s)	92, 141
BseMII	CTCAG	2 cut(s)	180, 194
BseSI	GKGCMC	1 cut(s)	268
BseXI	GCAGC	1 cut(s)	286
BsgI	GTGCAG	1 cut(s)	204
BshFI	GGCC	2 cut(s)	37, 157
BslI	CCNNNNNNNGG	2 cut(s)	92, 141
BsnI	GGCC	2 cut(s)	37, 157
Bsp1286I	GDGCHC	1 cut(s)	268
BspACI	CCGC	1 cut(s)	39
BspANI	GGCC	2 cut(s)	37, 157
BspCNI	CTCAG	2 cut(s)	181, 193
BssECI	CCNNGG	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	135
Bst4CI	ACNGT	1 cut(s)	263
BstC8I	GCNNGC	2 cut(s)	39, 186
BstDEI	CTNAG	3 cut(s)	180, 189, 225
BstF5I	GGATG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	1 cut(s)	58
BstNSI	RCATGY	1 cut(s)	188
BstSLI	GKGCMC	1 cut(s)	268
BstV1I	GCAGC	1 cut(s)	286
BsuRI	GGCC	2 cut(s)	37, 157
BtsCI	GGATG	1 cut(s)	244
BtsIMutI	CAGTG	2 cut(s)	96, 268
Cac8I	GCNNGC	2 cut(s)	39, 186
Cfr13I	GGNCC	3 cut(s)	36, 155, 174
CviAII	CATG	3 cut(s)	20, 185, 303
CviJI	RGCY	4 cut(s)	37, 72, 104, 157
CviKI_1	RGCY	4 cut(s)	37, 72, 104, 157
DdeI	CTNAG	3 cut(s)	180, 189, 225
DraIII	CACNNNGTG	1 cut(s)	164
Eco130I	CCWWGG	1 cut(s)	135
Eco47I	GGWCC	1 cut(s)	174
Eco57I	CTGAAG	1 cut(s)	72
EcoT14I	CCWWGG	1 cut(s)	135
ErhI	CCWWGG	1 cut(s)	135
FaeI	CATG	3 cut(s)	23, 188, 306
FaiI	YATR	5 cut(s)	21, 131, 186, 297, 304
FatI	CATG	3 cut(s)	19, 184, 302
FauI	CCCGC	1 cut(s)	46
Fnu4HI	GCNGC	1 cut(s)	300
FokI	GGATG	1 cut(s)	231
Fsp4HI	GCNGC	1 cut(s)	300
FspBI	CTAG	1 cut(s)	105
GluI	GCNGC	1 cut(s)	300
HaeIII	GGCC	2 cut(s)	37, 157
Hin1II	CATG	3 cut(s)	23, 188, 306
HinfI	GANTC	3 cut(s)	98, 194, 236
Hpy166II	GTNNAC	1 cut(s)	177
Hpy8I	GTNNAC	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	17, 96
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	1 cut(s)	122
HpyCH4V	TGCA	5 cut(s)	4, 167, 221, 272, 302
HpyF10VI	GCNNNNNNNGC	1 cut(s)	58
HpyF3I	CTNAG	3 cut(s)	180, 189, 225
HpySE526I	ACGT	1 cut(s)	122
Hsp92II	CATG	3 cut(s)	23, 188, 306
LpnPI	CCDG	3 cut(s)	66, 126, 282
Lsp1109I	GCAGC	1 cut(s)	286
MaeI	CTAG	1 cut(s)	105
MaeII	ACGT	1 cut(s)	122
MboII	GAAGA	1 cut(s)	221
MhlI	GDGCHC	1 cut(s)	268
MnlI	CCTC	4 cut(s)	72, 140, 146, 184
MwoI	GCNNNNNNNGC	1 cut(s)	58
NlaIII	CATG	3 cut(s)	23, 188, 306
NspI	RCATGY	1 cut(s)	188
PaeI	GCATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	98, 194, 236
PkrI	GCNGC	1 cut(s)	301
PspPI	GGNCC	3 cut(s)	36, 155, 174
SatI	GCNGC	1 cut(s)	300
Sau96I	GGNCC	3 cut(s)	36, 155, 174
SduI	GDGCHC	1 cut(s)	268
SetI	ASST	7 cut(s)	28, 88, 106, 125, 151, 226, 296
SinI	GGWCC	1 cut(s)	174
SphI	GCATGC	1 cut(s)	188
SsiI	CCGC	1 cut(s)	39
SspMI	CTAG	1 cut(s)	105
StyI	CCWWGG	1 cut(s)	135
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	1 cut(s)	125
TfiI	GAWTC	3 cut(s)	98, 194, 236
TscAI	CASTG	2 cut(s)	96, 268
TseI	GCWGC	1 cut(s)	299
TspDTI	ATGAA	1 cut(s)	36
TspRI	CASTG	2 cut(s)	96, 268
VpaK11BI	GGWCC	1 cut(s)	174
XceI	RCATGY	1 cut(s)	188
XspI	CTAG	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.