Rmu_sc0015122.1_g000001

G-type lectin S-receptor-like serine threonine-protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0015122.1
OG0001175
Physical Location & Seq
Forward (+)
279 .. 1278
1000 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0015122.1_g000001.1.cds

Sequence Viewer

Length: 825 bp
atggcattctcggttctccacttgcttggcctttaccttgtcgtccaaccattttgtgtagctgctgctgctgatcaaactgcaaatataagcttggggtcgtccctaactgcatcagacaactctaaaccgtggcattctccctccggggaatttgcgtatggatttcgccggattggtgatcaggacctcttcttgcttgccatatggtatgacaagataccagaaaagactattgtttggtacgcaaatggagacaatccagcaccaaaaggatccaaagtggagctcacgaaggatggtcatttcaggctcactagccctcggaaagaagatctctggccccagcctgttattagtggagttgcttatgctgccctgcttgactcaggcaactttgttcttgcaaaccagaattcatcagctcctttatggcagagcttcaaagaccccagagacaccattttaccaaccctagtgttggaaattggagaaaagctatcttccaggcagactgccaccaactactcaaagggccagtttcaactccaatttaaaccatccggtacgcttgagctgtatctcatagccttgcctacagagcaagcatattcatcatactacgtaagcaaaacatcggatgcagctgatgcaatgaactctggttatcagctagccttcaatgagtcaggtcaagtcaataaaatatttgcttggattcaactggaaatgagggcggcgggccatgtggatataacagttactgcagacttgatgcaaacacaaggccaatttgtgaatgcgttcctggcttttctcctttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
B_lectin PAN_2 Pkinase S_locus_glycop

Protein Analysis

274

Amino Acids

30.19

Weight (kDa)

5.36

Isoelectric Point (pI)

31.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 737, 740
AclWI GGATC 2 cut(s) 270, 283
AcsI RAATTY 2 cut(s) 152, 415
AfaI GTAC 2 cut(s) 245, 568
AfiI CCNNNNNNNGG 1 cut(s) 481
AgsI TTSAA 4 cut(s) 445, 545, 682, 722
AjnI CCWGG 2 cut(s) 506, 807
AluBI AGCT 9 cut(s) 62, 93, 289, 425, 441, 499, 577, 647, 673
AluI AGCT 9 cut(s) 62, 93, 289, 425, 441, 499, 577, 647, 673
Alw21I GWGCWC 1 cut(s) 291
Alw26I GTCTC 2 cut(s) 249, 450
AlwI GGATC 2 cut(s) 270, 283
AlwNI CAGNNNCTG 1 cut(s) 764
AoxI GGCC 5 cut(s) 28, 341, 535, 742, 787
ApeKI GCWGC 5 cut(s) 62, 65, 68, 374, 644
ApoI RAATTY 2 cut(s) 152, 415
Asp700I GAANNNNTTC 1 cut(s) 803
AspS9I GGNCC 4 cut(s) 187, 342, 535, 742
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 191
AsuNHI GCTAGC 1 cut(s) 673
AvaII GGWCC 1 cut(s) 187
BamHI GGATCC 1 cut(s) 275
BanII GRGCYC 1 cut(s) 291
Bbv12I GWGCWC 1 cut(s) 291
BbvI GCAGC 5 cut(s) 49, 52, 55, 361, 656
BccI CCATC 2 cut(s) 293, 568
BciT130I CCWGG 2 cut(s) 508, 809
BclI TGATCA 2 cut(s) 73, 181
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 2 cut(s) 249, 450
BfaI CTAG 3 cut(s) 318, 476, 674
BfmI CTRYAG 2 cut(s) 597, 765
BglII AGATCT 1 cut(s) 334
BisI GCNGC 6 cut(s) 63, 66, 69, 375, 645, 738
BlsI GCNGC 6 cut(s) 64, 67, 70, 376, 646, 739
Bme1390I CCNGG 3 cut(s) 148, 508, 809
Bme18I GGWCC 1 cut(s) 187
BmgT120I GGNCC 4 cut(s) 187, 342, 535, 742
BmiI GGNNCC 2 cut(s) 277, 344
BmrFI CCNGG 3 cut(s) 148, 508, 809
BmsI GCATC 4 cut(s) 122, 631, 640, 765
BmtI GCTAGC 1 cut(s) 677
BpuEI CTTGAG 1 cut(s) 593
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 625
BsaJI CCNNGG 3 cut(s) 131, 147, 323
BsaWI WCCGGW 1 cut(s) 563
Bsc4I CCNNNNNNNGG 1 cut(s) 481
Bse1I ACTGG 2 cut(s) 538, 729
Bse3DI GCAATG 1 cut(s) 660
BseBI CCWGG 2 cut(s) 508, 809
BseDI CCNNGG 3 cut(s) 131, 147, 323
BseGI GGATG 3 cut(s) 304, 560, 646
BseLI CCNNNNNNNGG 1 cut(s) 481
BseMI GCAATG 1 cut(s) 660
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 2 cut(s) 538, 729
BseXI GCAGC 5 cut(s) 49, 52, 55, 361, 656
BseYI CCCAGC 1 cut(s) 345
BshFI GGCC 5 cut(s) 30, 343, 537, 744, 789
BsiHKAI GWGCWC 1 cut(s) 291
BsiSI CCGG 3 cut(s) 147, 172, 564
BslFI GGGAC 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 481
BsmAI GTCTC 2 cut(s) 249, 450
BsmFI GGGAC 1 cut(s) 88
BsmI GAATGC 3 cut(s) 5, 136, 805
BsnI GGCC 5 cut(s) 30, 343, 537, 744, 789
Bsp1286I GDGCHC 1 cut(s) 291
Bsp143I GATC 4 cut(s) 73, 181, 275, 334
BspACI CCGC 2 cut(s) 737, 740
BspANI GGCC 5 cut(s) 30, 343, 537, 744, 789
BspCNI CTCAG 1 cut(s) 401
BspLI GGNNCC 2 cut(s) 277, 344
BspMAI CTGCAG 1 cut(s) 769
BspOI GCTAGC 1 cut(s) 677
BspPI GGATC 2 cut(s) 270, 283
BsrDI GCAATG 1 cut(s) 660
BsrI ACTGG 2 cut(s) 538, 729
BssECI CCNNGG 3 cut(s) 131, 147, 323
BssMI GATC 4 cut(s) 73, 181, 275, 334
Bst2UI CCWGG 2 cut(s) 508, 809
Bst4CI ACNGT 2 cut(s) 132, 760
Bst6I CTCTTC 1 cut(s) 197
BstAPI GCANNNNNTGC 1 cut(s) 650
BstBAI YACGTR 1 cut(s) 625
BstC8I GCNNGC 4 cut(s) 201, 606, 675, 742
BstDEI CTNAG 1 cut(s) 388
BstDSI CCRYGG 1 cut(s) 131
BstF5I GGATG 3 cut(s) 304, 560, 646
BstKTI GATC 4 cut(s) 76, 184, 278, 337
BstMAI GTCTC 2 cut(s) 249, 450
BstMBI GATC 4 cut(s) 73, 181, 275, 334
BstMWI GCNNNNNNNGC 5 cut(s) 68, 374, 601, 650, 809
BstNI CCWGG 2 cut(s) 508, 809
BstSCI CCNGG 3 cut(s) 146, 506, 807
BstSFI CTRYAG 2 cut(s) 597, 765
BstSNI TACGTA 1 cut(s) 625
BstV1I GCAGC 5 cut(s) 49, 52, 55, 361, 656
BstX2I RGATCY 2 cut(s) 275, 334
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 2 cut(s) 275, 334
BsuRI GGCC 5 cut(s) 30, 343, 537, 744, 789
BtgI CCRYGG 1 cut(s) 131
BtsCI GGATG 3 cut(s) 304, 560, 646
Cac8I GCNNGC 4 cut(s) 201, 606, 675, 742
CaiI CAGNNNCTG 1 cut(s) 764
Cfr13I GGNCC 4 cut(s) 187, 342, 535, 742
Csp6I GTAC 2 cut(s) 244, 567
CviAII CATG 1 cut(s) 746
CviQI GTAC 2 cut(s) 244, 567
DdeI CTNAG 1 cut(s) 388
DpnI GATC 4 cut(s) 75, 183, 277, 336
DpnII GATC 4 cut(s) 73, 181, 275, 334
DraI TTTAAA 1 cut(s) 556
Eam1104I CTCTTC 1 cut(s) 197
EarI CTCTTC 1 cut(s) 197
Ecl136II GAGCTC 1 cut(s) 289
Eco105I TACGTA 1 cut(s) 625
Eco24I GRGCYC 1 cut(s) 291
Eco47I GGWCC 1 cut(s) 187
Eco53kI GAGCTC 1 cut(s) 289
EcoICRI GAGCTC 1 cut(s) 289
EcoO109I RGGNCCY 1 cut(s) 187
EcoRI GAATTC 1 cut(s) 415
EcoRII CCWGG 2 cut(s) 506, 807
EcoT38I GRGCYC 1 cut(s) 291
FaeI CATG 1 cut(s) 749
FaqI GGGAC 1 cut(s) 88
FatI CATG 1 cut(s) 745
FauI CCCGC 1 cut(s) 733
FauNDI CATATG 1 cut(s) 206
FbaI TGATCA 2 cut(s) 73, 181
Fnu4HI GCNGC 6 cut(s) 63, 66, 69, 375, 645, 738
FokI GGATG 3 cut(s) 311, 547, 653
FriOI GRGCYC 1 cut(s) 291
Fsp4HI GCNGC 6 cut(s) 63, 66, 69, 375, 645, 738
FspBI CTAG 3 cut(s) 318, 476, 674
GluI GCNGC 6 cut(s) 63, 66, 69, 375, 645, 738
GsaI CCCAGC 1 cut(s) 349
HaeIII GGCC 5 cut(s) 30, 343, 537, 744, 789
HapII CCGG 3 cut(s) 147, 172, 564
Hin1II CATG 1 cut(s) 749
HindIII AAGCTT 1 cut(s) 91
HinfI GANTC 3 cut(s) 386, 686, 718
HpaII CCGG 3 cut(s) 147, 172, 564
HphI GGTGA 1 cut(s) 191
Hpy188I TCNGA 3 cut(s) 118, 327, 640
Hpy188III TCNNGA 2 cut(s) 185, 292
HpyAV CCTTC 2 cut(s) 289, 688
HpyCH4III ACNGT 2 cut(s) 132, 760
HpyCH4IV ACGT 1 cut(s) 624
HpyCH4V TGCA 7 cut(s) 83, 113, 407, 644, 653, 767, 778
HpyF10VI GCNNNNNNNGC 5 cut(s) 68, 374, 601, 650, 809
HpyF3I CTNAG 1 cut(s) 388
HpySE526I ACGT 1 cut(s) 624
Hsp92II CATG 1 cut(s) 749
Ksp22I TGATCA 2 cut(s) 73, 181
Kzo9I GATC 4 cut(s) 73, 181, 275, 334
LmnI GCTCC 2 cut(s) 286, 430
Lsp1109I GCAGC 5 cut(s) 49, 52, 55, 361, 656
LweI GCATC 4 cut(s) 122, 631, 640, 765
MaeI CTAG 3 cut(s) 318, 476, 674
MaeII ACGT 1 cut(s) 624
MaeIII GTNAC 1 cut(s) 760
MalI GATC 4 cut(s) 75, 183, 277, 336
MboI GATC 4 cut(s) 73, 181, 275, 334
MboII GAAGA 3 cut(s) 184, 344, 495
MflI RGATCY 2 cut(s) 275, 334
MhlI GDGCHC 1 cut(s) 291
MluCI AATT 5 cut(s) 152, 415, 486, 551, 791
MlyI GAGTC 2 cut(s) 380, 695
MmeI TCCRAC 2 cut(s) 70, 462
MnlI CCTC 4 cut(s) 154, 200, 333, 726
MroXI GAANNNNTTC 1 cut(s) 803
MseI TTAA 1 cut(s) 555
MspA1I CMGCKG 1 cut(s) 647
MspI CCGG 3 cut(s) 147, 172, 564
MspR9I CCNGG 3 cut(s) 148, 508, 809
Mva1269I GAATGC 3 cut(s) 5, 136, 805
MvaI CCWGG 2 cut(s) 508, 809
MwoI GCNNNNNNNGC 5 cut(s) 68, 374, 601, 650, 809
NciI CCSGG 1 cut(s) 148
NdeI CATATG 1 cut(s) 206
NdeII GATC 4 cut(s) 73, 181, 275, 334
NheI GCTAGC 1 cut(s) 673
NlaIII CATG 1 cut(s) 749
NlaIV GGNNCC 2 cut(s) 277, 344
PctI GAATGC 3 cut(s) 5, 136, 805
PdmI GAANNNNTTC 1 cut(s) 803
PfeI GAWTC 1 cut(s) 718
PkrI GCNGC 6 cut(s) 64, 67, 70, 376, 646, 739
PleI GAGTC 2 cut(s) 380, 694
PpsI GAGTC 2 cut(s) 380, 694
Ppu21I YACGTR 1 cut(s) 625
PpuMI RGGWCCY 1 cut(s) 187
Psp124BI GAGCTC 1 cut(s) 291
Psp5II RGGWCCY 1 cut(s) 187
Psp6I CCWGG 2 cut(s) 506, 807
PspFI CCCAGC 1 cut(s) 345
PspGI CCWGG 2 cut(s) 506, 807
PspN4I GGNNCC 2 cut(s) 277, 344
PspPI GGNCC 4 cut(s) 187, 342, 535, 742
PspPPI RGGWCCY 1 cut(s) 187
PstI CTGCAG 1 cut(s) 769
PstNI CAGNNNCTG 1 cut(s) 764
PsuI RGATCY 2 cut(s) 275, 334
PvuII CAGCTG 1 cut(s) 647
RsaI GTAC 2 cut(s) 245, 568
RsaNI GTAC 2 cut(s) 244, 567
SacI GAGCTC 1 cut(s) 291
SaqAI TTAA 1 cut(s) 555
SatI GCNGC 6 cut(s) 63, 66, 69, 375, 645, 738
Sau3AI GATC 4 cut(s) 73, 181, 275, 334
Sau96I GGNCC 4 cut(s) 187, 342, 535, 742
SchI GAGTC 2 cut(s) 380, 695
ScrFI CCNGG 3 cut(s) 148, 508, 809
SduI GDGCHC 1 cut(s) 291
SfaNI GCATC 4 cut(s) 122, 631, 640, 765
SfcI CTRYAG 2 cut(s) 597, 765
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 572
SmoI CTYRAG 1 cut(s) 572
SnaBI TACGTA 1 cut(s) 625
Sse9I AATT 5 cut(s) 152, 415, 486, 551, 791
SsiI CCGC 2 cut(s) 737, 740
SspI AATATT 1 cut(s) 708
SspMI CTAG 3 cut(s) 318, 476, 674
SstI GAGCTC 1 cut(s) 291
StyD4I CCNGG 3 cut(s) 146, 506, 807
TaaI ACNGT 2 cut(s) 132, 760
TaiI ACGT 1 cut(s) 627
TasI AATT 5 cut(s) 152, 415, 486, 551, 791
TauI GCSGC 1 cut(s) 740
TfiI GAWTC 1 cut(s) 718
Tru1I TTAA 1 cut(s) 555
Tru9I TTAA 1 cut(s) 555
TseI GCWGC 5 cut(s) 62, 65, 68, 374, 644
TspDTI ATGAA 3 cut(s) 408, 603, 671
VpaK11BI GGWCC 1 cut(s) 187
XapI RAATTY 2 cut(s) 152, 415
XmnI GAANNNNTTC 1 cut(s) 803
XspI CTAG 3 cut(s) 318, 476, 674
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.