Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0001175

Physical Location & Seq

Genomic Coordinates Reverse (-)

644253 .. 646312

Gene Structure 2060 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG003900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGAAGTTACTCAGAGGGCATCCCAATGTTGTCACTCTCTATGCCCACGCCATCATGGATTTGGGCCGCACAAAGGAGGCACTCCTTGTCATGGAATATTGTGACAAGTCTCTGGTTACCGTACTCGATAGCAGAGGAGCTGGCTTTTTTGATGAGAAACAGGTCCTTGCAATCTTCAGAGATGTGTGTACTGCAGTTTTTGCGATGCACACACTGTCCCCTCCCATTGCTCATAGGGATTTGAAAGCTGAGAATCTTCTGTTGGGGCCGGATGGACTGTGGAAATTGTGTGATTTTGGAAGCACCTCTACCAACCACAAGCGCTTTGAGAAGCCTGAAGAAATGGGTATTGAAGAAGACATTATCAGAAAGCACACAACACCTGCCTACAGGGCCCCTGAGATGTGGGATCTATTTCGGAGAGAACTTATCAATGAGAAAGTAGACATATGGGCTCTTGGCTGCCTTCTCTTTCGCATTTGCTACTTCAAAAGTGCATTCGATGGAGAGTCAAAGCTGCAGATCTTGAATGGAAACTATCGCATTCCTGAGTTACCTAACTATGGCTCGTCGATTACCGATCTCATCAGAGACATGCTTCAGGCATCACCAGACGACAGACCAGATATCACGCAGGTGTGGTTTCGTGTTAATGAGCTGTTACCAGTTGGTTTACAGAAGTCTTTACCTGATAGGCCACCCGAAATGCACTCTGCTGGAAAACATGAAGGTTTTTCAAGGCCCGCAAACAAGTCGCCTGAAATGCCTCGTAGAAGCCCACCCCCACCACCTTCAGTGGGAGAATCAGCTAGAAATCCATCACAAACGTCAAATATGTCCAAGGCAGGGGGAGGTGGAGGGCCACTTGGTGCATTTTGGTCCACTCAGCATGCTGAGGATTCAGTTGTTGTTGAAGAAAAGACTGCACCTAAGTTTGATGATTCTAATCATCCTTTACCCAAGAACAGTGCCCCTGCAAAAGTGGAAAATACACCAACCTATGCTGCATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0030100 GO:0032879 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0050789 GO:0050794 GO:0051049 GO:0051128 GO:0060627 GO:0065007 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase

Protein Analysis

336

Amino Acids

37.46

Weight (kDa)

6.22

Isoelectric Point (pI)

53.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Pkinase	PF00069	2 - 213	6.7e-32	Protein kinase domain
PK_Tyr_Ser-Thr	PF07714	2 - 213	4.7e-19	Protein tyrosine and serine/threonine kinase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001175)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G32850 AT2G32850
fragaria_vesca	FvH4_7g00200 FvH4_7g00210 FvH4_7g00210
malus_domestica	MD02G1318100.v1.1 MD14G1085700.v1.1 MD14G1085800.v1.1
prunus_persica	Prupe.2G004700_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1 Prupe.2G004800_v2.0.a1
pyrus_communis	pycom02g26640 pycom14g07560
rosa_chinensis	RchiOBHm_Chr1g0313461 RchiOBHm_Chr1g0313481 RchiOBHm_Chr1g0313501 RchiOBHm_Chr1g0313511 RchiOBHm_Chr1g0313531 RchiOBHm_Chr1g0313561 RchiOBHm_Chr1g0313571 RchiOBHm_Chr1g0313591 RchiOBHm_Chr1g0313601 RchiOBHm_Chr1g0313611 RchiOBHm_Chr1g0313621 RchiOBHm_Chr1g0313631 RchiOBHm_Chr1g0372901
rosa_laevigata	RLG00000026867 RLG00000030789 RLG00000030790 RLG00000030791
rosa_multiflora	Rmu_co8009002.1_g000001 Rmu_sc0000931.1_g000014 Rmu_sc0000931.1_g000018 Rmu_sc0015122.1_g000001
rosa_roxburghii	Rroxscaffold_4G00284640 Rroxscaffold_4G00332160
rosa_rugosa	Rorug01G0374800 RorugPtG0005200.1 RorugPtG0005300.1 RorugPtG0005400.1
rosa_samantha	Rh1AG003900 Rh1AG005500 Rh1BG000900 Rh1CG000500 Rh1CG000700 Rh1CG008400 Rh1DG003600 Rh1DG003700 Rh1DG003800 Rh1DG378100
rosa_wichuraiana	Rw1G000310 Rw1G000320 Rw1G000330 Rw1G033770

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	391, 625
Acc36I	ACCTGC	2 cut(s)	391, 625
AccI	GTMKAC	1 cut(s)	444
AciI	CCGC	2 cut(s)	67, 744
AclWI	GGATC	1 cut(s)	417
AcuI	CTGAAG	4 cut(s)	160, 357, 584, 777
AdeI	CACNNNGTG	1 cut(s)	869
AfaI	GTAC	2 cut(s)	123, 190
AfeI	AGCGCT	1 cut(s)	323
AfiI	CCNNNNNNNGG	5 cut(s)	73, 91, 563, 797, 846
AgsI	TTSAA	6 cut(s)	244, 353, 490, 529, 738, 914
AjuI	GAANNNNNNNTTGG	2 cut(s)	245, 277
AleI	CACNNNNGTG	1 cut(s)	635
AluBI	AGCT	5 cut(s)	140, 248, 517, 658, 809
AluI	AGCT	5 cut(s)	140, 248, 517, 658, 809
Alw26I	GTCTC	2 cut(s)	114, 585
AlwI	GGATC	1 cut(s)	417
Aor51HI	AGCGCT	1 cut(s)	323
AoxI	GGCC	6 cut(s)	64, 266, 393, 695, 740, 860
ApaI	GGGCCC	1 cut(s)	397
ApeKI	GCWGC	3 cut(s)	462, 517, 1004
AspLEI	GCGC	1 cut(s)	324
AspS9I	GGNCC	8 cut(s)	64, 163, 266, 393, 394, 741, 860, 879
AsuHPI	GGTGA	1 cut(s)	600
AvaII	GGWCC	2 cut(s)	163, 879
BaeGI	GKGCMC	2 cut(s)	397, 973
BanII	GRGCYC	2 cut(s)	397, 457
BarI	GAAGNNNNNNTAC	2 cut(s)	292, 324
BbsI	GAAGAC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	894
BbvI	GCAGC	3 cut(s)	449, 504, 991
BccI	CCATC	4 cut(s)	59, 266, 497, 826
BcgI	CGANNNNNNTGC	2 cut(s)	735, 769
BcoDI	GTCTC	2 cut(s)	114, 585
BfaI	CTAG	1 cut(s)	810
BfmI	CTRYAG	3 cut(s)	192, 388, 518
BfoI	RGCGCY	1 cut(s)	325
BfuAI	ACCTGC	2 cut(s)	391, 625
BglI	GCCNNNNNGGC	1 cut(s)	392
BglII	AGATCT	1 cut(s)	522
BisI	GCNGC	4 cut(s)	67, 463, 518, 1005
BlsI	GCNGC	4 cut(s)	68, 464, 519, 1006
Bme18I	GGWCC	2 cut(s)	163, 879
BmgT120I	GGNCC	8 cut(s)	64, 163, 266, 393, 394, 741, 860, 879
BmiI	GGNNCC	3 cut(s)	267, 395, 396
BmsI	GCATC	3 cut(s)	28, 195, 614
BpiI	GAAGAC	1 cut(s)	363
Bpu10I	CCTNAGC	1 cut(s)	894
BsaBI	GATNNNNATC	1 cut(s)	945
BsaJI	CCNNGG	1 cut(s)	840
Bsc4I	CCNNNNNNNGG	5 cut(s)	73, 91, 563, 797, 846
Bse1I	ACTGG	1 cut(s)	665
Bse3DI	GCAATG	1 cut(s)	225
Bse8I	GATNNNNATC	1 cut(s)	945
BseDI	CCNNGG	1 cut(s)	840
BseGI	GGATG	3 cut(s)	19, 277, 949
BseJI	GATNNNNATC	1 cut(s)	945
BseLI	CCNNNNNNNGG	5 cut(s)	73, 91, 563, 797, 846
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	6 cut(s)	25, 240, 390, 540, 885, 899
BseNI	ACTGG	1 cut(s)	665
BseRI	GAGGAG	1 cut(s)	150
BseSI	GKGCMC	2 cut(s)	397, 973
BseXI	GCAGC	3 cut(s)	449, 504, 991
BsgI	GTGCAG	1 cut(s)	909
BshFI	GGCC	6 cut(s)	66, 268, 395, 697, 742, 862
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	5 cut(s)	73, 91, 563, 797, 846
BsmAI	GTCTC	2 cut(s)	114, 585
BsmFI	GGGAC	1 cut(s)	202
BsmI	GAATGC	2 cut(s)	497, 543
BsnI	GGCC	6 cut(s)	66, 268, 395, 697, 742, 862
Bsp120I	GGGCCC	1 cut(s)	393
Bsp1286I	GDGCHC	3 cut(s)	397, 457, 973
Bsp143I	GATC	3 cut(s)	409, 522, 580
BspACI	CCGC	2 cut(s)	67, 744
BspANI	GGCC	6 cut(s)	66, 268, 395, 697, 742, 862
BspCNI	CTCAG	6 cut(s)	24, 241, 391, 541, 886, 898
BspLI	GGNNCC	3 cut(s)	267, 395, 396
BspMAI	CTGCAG	2 cut(s)	196, 522
BspMI	ACCTGC	2 cut(s)	391, 625
BspPI	GGATC	1 cut(s)	417
BsrDI	GCAATG	1 cut(s)	225
BsrI	ACTGG	1 cut(s)	665
BssECI	CCNNGG	1 cut(s)	840
BssMI	GATC	3 cut(s)	409, 522, 580
BssT1I	CCWWGG	1 cut(s)	840
Bst4CI	ACNGT	4 cut(s)	121, 216, 279, 968
BstAPI	GCANNNNNTGC	1 cut(s)	200
BstC8I	GCNNGC	3 cut(s)	142, 744, 891
BstDEI	CTNAG	7 cut(s)	11, 249, 399, 549, 885, 894, 930
BstEII	GGTNACC	1 cut(s)	115
BstF5I	GGATG	3 cut(s)	19, 277, 949
BstH2I	RGCGCY	1 cut(s)	325
BstHHI	GCGC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	412, 525, 583
BstMAI	GTCTC	2 cut(s)	114, 585
BstMBI	GATC	3 cut(s)	409, 522, 580
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 392, 763
BstNSI	RCATGY	2 cut(s)	598, 893
BstPI	GGTNACC	1 cut(s)	115
BstSFI	CTRYAG	3 cut(s)	192, 388, 518
BstSLI	GKGCMC	2 cut(s)	397, 973
BstV1I	GCAGC	3 cut(s)	449, 504, 991
BstV2I	GAAGAC	1 cut(s)	363
BstX2I	RGATCY	2 cut(s)	409, 522
BstYI	RGATCY	2 cut(s)	409, 522
BsuRI	GGCC	6 cut(s)	66, 268, 395, 697, 742, 862
BtgZI	GCGATG	1 cut(s)	218
BtsCI	GGATG	3 cut(s)	19, 277, 949
BtsIMutI	CAGTG	3 cut(s)	212, 801, 973
BveI	ACCTGC	2 cut(s)	391, 625
Cac8I	GCNNGC	3 cut(s)	142, 744, 891
CfoI	GCGC	1 cut(s)	324
Cfr13I	GGNCC	8 cut(s)	64, 163, 266, 393, 394, 741, 860, 879
Csp6I	GTAC	2 cut(s)	122, 189
CviAII	CATG	6 cut(s)	55, 91, 595, 725, 890, 1008
CviQI	GTAC	2 cut(s)	122, 189
DdeI	CTNAG	7 cut(s)	11, 249, 399, 549, 885, 894, 930
DpnI	GATC	3 cut(s)	411, 524, 582
DpnII	GATC	3 cut(s)	409, 522, 580
DraIII	CACNNNGTG	1 cut(s)	869
Eco130I	CCWWGG	1 cut(s)	840
Eco24I	GRGCYC	2 cut(s)	397, 457
Eco32I	GATATC	1 cut(s)	628
Eco47I	GGWCC	2 cut(s)	163, 879
Eco47III	AGCGCT	1 cut(s)	323
Eco57I	CTGAAG	4 cut(s)	160, 357, 584, 777
Eco91I	GGTNACC	1 cut(s)	115
EcoO109I	RGGNCCY	3 cut(s)	163, 393, 394
EcoO65I	GGTNACC	1 cut(s)	115
EcoRV	GATATC	1 cut(s)	628
EcoT14I	CCWWGG	1 cut(s)	840
EcoT38I	GRGCYC	2 cut(s)	397, 457
ErhI	CCWWGG	1 cut(s)	840
FaeI	CATG	6 cut(s)	58, 94, 598, 728, 893, 1011
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	6 cut(s)	54, 90, 594, 724, 889, 1007
FauI	CCCGC	1 cut(s)	751
FauNDI	CATATG	1 cut(s)	449
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	4 cut(s)	67, 463, 518, 1005
FokI	GGATG	3 cut(s)	6, 284, 936
FriOI	GRGCYC	2 cut(s)	397, 457
Fsp4HI	GCNGC	4 cut(s)	67, 463, 518, 1005
FspBI	CTAG	1 cut(s)	810
GlaI	GCGC	1 cut(s)	323
GluI	GCNGC	4 cut(s)	67, 463, 518, 1005
HaeII	RGCGCY	1 cut(s)	325
HaeIII	GGCC	6 cut(s)	66, 268, 395, 697, 742, 862
HapII	CCGG	1 cut(s)	269
HhaI	GCGC	1 cut(s)	324
Hin1II	CATG	6 cut(s)	58, 94, 598, 728, 893, 1011
Hin6I	GCGC	1 cut(s)	322
HinP1I	GCGC	1 cut(s)	322
HinfI	GANTC	5 cut(s)	253, 509, 803, 899, 941
HpaII	CCGG	1 cut(s)	269
HphI	GGTGA	1 cut(s)	600
Hpy166II	GTNNAC	4 cut(s)	189, 445, 674, 882
Hpy188I	TCNGA	5 cut(s)	14, 179, 368, 420, 590
Hpy188III	TCNNGA	2 cut(s)	526, 548
Hpy8I	GTNNAC	4 cut(s)	189, 445, 674, 882
Hpy99I	CGWCG	1 cut(s)	574
HpyAV	CCTTC	3 cut(s)	476, 722, 801
HpyCH4III	ACNGT	4 cut(s)	121, 216, 279, 968
HpyCH4IV	ACGT	1 cut(s)	827
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 392, 763
HpyF3I	CTNAG	7 cut(s)	11, 249, 399, 549, 885, 894, 930
HpySE526I	ACGT	1 cut(s)	827
Hsp92II	CATG	6 cut(s)	58, 94, 598, 728, 893, 1011
HspAI	GCGC	1 cut(s)	322
Kzo9I	GATC	3 cut(s)	409, 522, 580
LmnI	GCTCC	1 cut(s)	137
Lsp1109I	GCAGC	3 cut(s)	449, 504, 991
LweI	GCATC	3 cut(s)	28, 195, 614
MaeI	CTAG	1 cut(s)	810
MaeII	ACGT	1 cut(s)	827
MaeIII	GTNAC	6 cut(s)	6, 31, 101, 115, 552, 660
MalI	GATC	3 cut(s)	411, 524, 582
MboI	GATC	3 cut(s)	409, 522, 580
MboII	GAAGA	6 cut(s)	166, 248, 350, 365, 368, 926
MflI	RGATCY	2 cut(s)	409, 522
MhlI	GDGCHC	3 cut(s)	397, 457, 973
MluCI	AATT	1 cut(s)	284
MlyI	GAGTC	1 cut(s)	518
MnlI	CCTC	9 cut(s)	8, 70, 128, 231, 316, 777, 845, 851, 889
MseI	TTAA	1 cut(s)	651
MslI	CAYNNNNRTG	2 cut(s)	24, 635
MspI	CCGG	1 cut(s)	269
Mva1269I	GAATGC	2 cut(s)	497, 543
MwoI	GCNNNNNNNGC	3 cut(s)	200, 392, 763
NdeI	CATATG	1 cut(s)	449
NdeII	GATC	3 cut(s)	409, 522, 580
NlaIII	CATG	6 cut(s)	58, 94, 598, 728, 893, 1011
NlaIV	GGNNCC	3 cut(s)	267, 395, 396
NmuCI	GTSAC	2 cut(s)	31, 101
NspI	RCATGY	2 cut(s)	598, 893
OliI	CACNNNNGTG	1 cut(s)	635
PaeI	GCATGC	1 cut(s)	893
PaqCI	CACCTGC	2 cut(s)	391, 625
PctI	GAATGC	2 cut(s)	497, 543
PfeI	GAWTC	4 cut(s)	253, 803, 899, 941
PkrI	GCNGC	4 cut(s)	68, 464, 519, 1006
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PpuMI	RGGWCCY	1 cut(s)	163
Psp5II	RGGWCCY	1 cut(s)	163
PspEI	GGTNACC	1 cut(s)	115
PspN4I	GGNNCC	3 cut(s)	267, 395, 396
PspOMI	GGGCCC	1 cut(s)	393
PspPI	GGNCC	8 cut(s)	64, 163, 266, 393, 394, 741, 860, 879
PspPPI	RGGWCCY	1 cut(s)	163
PstI	CTGCAG	2 cut(s)	196, 522
PsuI	RGATCY	2 cut(s)	409, 522
RsaI	GTAC	2 cut(s)	123, 190
RsaNI	GTAC	2 cut(s)	122, 189
RseI	CAYNNNNRTG	2 cut(s)	24, 635
SaqAI	TTAA	1 cut(s)	651
SatI	GCNGC	4 cut(s)	67, 463, 518, 1005
Sau3AI	GATC	3 cut(s)	409, 522, 580
Sau96I	GGNCC	8 cut(s)	64, 163, 266, 393, 394, 741, 860, 879
SchI	GAGTC	1 cut(s)	518
SduI	GDGCHC	3 cut(s)	397, 457, 973
SfaNI	GCATC	3 cut(s)	28, 195, 614
SfcI	CTRYAG	3 cut(s)	192, 388, 518
SinI	GGWCC	2 cut(s)	163, 879
SmiMI	CAYNNNNRTG	2 cut(s)	24, 635
SphI	GCATGC	1 cut(s)	893
Sse9I	AATT	1 cut(s)	284
SsiI	CCGC	2 cut(s)	67, 744
SspI	AATATT	1 cut(s)	98
SspMI	CTAG	1 cut(s)	810
StyI	CCWWGG	1 cut(s)	840
TaaI	ACNGT	4 cut(s)	121, 216, 279, 968
TaiI	ACGT	1 cut(s)	830
TaqI	TCGA	3 cut(s)	126, 501, 572
TasI	AATT	1 cut(s)	284
TatI	WGTACW	1 cut(s)	188
TauI	GCSGC	1 cut(s)	69
TfiI	GAWTC	4 cut(s)	253, 803, 899, 941
Tru1I	TTAA	1 cut(s)	651
Tru9I	TTAA	1 cut(s)	651
TscAI	CASTG	3 cut(s)	219, 801, 973
TseFI	GTSAC	2 cut(s)	31, 101
TseI	GCWGC	3 cut(s)	462, 517, 1004
Tsp45I	GTSAC	2 cut(s)	31, 101
TspDTI	ATGAA	2 cut(s)	17, 741
TspRI	CASTG	3 cut(s)	219, 801, 973
VpaK11BI	GGWCC	2 cut(s)	163, 879
XceI	RCATGY	2 cut(s)	598, 893
XcmI	CCANNNNNNNNNTGG	1 cut(s)	58
XmiI	GTMKAC	1 cut(s)	444
XspI	CTAG	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.