Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

47675597 .. 47677879

Gene Structure 2283 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1385700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2283 bp

ATGGCGTACATTTCTCTCTCAAAACCCTACCGATGGCGACCTCGACCCTCCAATCCTCAGTCCCTCACGCTCCTCCGCCTCTTCAGCTCAACCGAATCCCCCACCGGAGCCACAGCGGCAACCGAGTCCGCCACTGAAGCCACAGCGGCAACCGAAGCTGTAGCCGCCGCCGAAGCAGCAGCCCCAGCCCAGACCCGTGTCCCAAAACCTAAGCAGCACCGTCATCGAAACCCAGAGAAGACAGAGGACATAATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGTTGCAGAACTCGATCCGGAACTTGGTACCCGAATTCGACCACAACCTTGTGTGGAATGTCTTGCACGGCGCTCGGAACTGGGAGCACGCCCTCCAATTCTTCAGGTGGGTTGAGCGGTCCGGATTATTCAAACACGACCGCGAGACCCATTTGAAGATTATTGAGATTCTGGGCCGGAATTTGAAGCTCAACCATGCCCGGTGCATCCTTCTGGACATGCCGAAAAAGGGCGTGCAACTCGACGAGGACCTCTTCCTTGCACTCATTGATGGCTACGGCAAGGCGGGCTATGGTAAGGCTGGCATTATTCAGGAGTCTGTTAAGTTGTTTGATAGTATGAAGGAATTGGGTGTGCAGAGAAGTCTCAAGTCCTATGAGGCTCTCTTTAAGGCCATTATGCGCCGCGGCCGGTATATGATGGCTAAGAGGTATTTTAATGCAATGTTGAGTGAGGGAATAGAGCCCGATAGGCATACTTATAATGTTATGATTTGGGGTTTCTTCATGAGCAAGAGGTTAGAGACCGCCAAGCGGTTTTATGAGGATATGAAGAGTAGAGGAATTTCCCCCGATCTGGTTACTTATAACACTATGATTCATGGGTACAATCGGTTTAAGATGATGGATGAGGCAGAGCAGTTGTTTGTGGAGTTGAAGGGGAGGAATATAGAACCTAATGTGATATGCTATACTACCATGATTAAAGGGTATGTTGATGTTGGGAGAGTTGATGATGCTTTGAGGTTGTTTCAAGAGATGAAGTCTTTTGGTATTAAGCCGAATGCTGTCACATTTTCAACTCTGTTGCCGGGGCTTTGTGAGGCTGAGAAAAAGGATGAAGCTGTGAACATGTTAAAGGAGATGGTTCAGAGGTATATTGCTCCCAAGGATAATGCAATCTTTGAGAAATTGCTAACTTTGATGTGCAAATCTGGGGATTTGGATTCAGCTGCTGATGTCCTCAAGGCAATGATTCGGCTGAGCATTCCCACAGAGCCTGGTCATTATGGTATCCTGATTGAGAACTTTTGCAAGGCTGGAGTTTATGATCGAGCAATCAAGCTGCTTGATAAGCTTATTGAGAAAGAAATTATTTTGAGGCCCCAGAGTTCTATCGAGTTGGAGGCTAGTGCTTATAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACTGAAAAAGCTGAAGTCTTTTTCCGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATTTGATGTGTGGGCATGCGAAAGAAGGAAATTCTGATTCTGCTTTTGAGATTTTAAGGATCATGGGTAGGAGAGGGGTCCCTGGAGAAGCAGATTCTTACAGGTTACTCATTAACAGCTACTTGAGTAAAGGTGAACCGGCTGATGCCAAAACAGCTTTGGACAGTATGCTTGAAAGCGGGCATATTCCAGAGTCACCACTATTCAGGTCAGTTTTAGAGAGTCTATTTGAAGATGGGAGGGTTCAAACTGCAAGCCGAGTAATGAAGAGTATGGTAGAGAAGGGGGTGAAGGAGAACATGGATTTGGTTGCCAAGATTTTGGAAGCCCTCTTTATGAGAGGTCATGTTGAGGAAGCGCTGGGACGAATCGATCTACTTATGCAAAGTGGATGTACACCTCAGTTTGATAGCCTTTTATCTGTTCTTGCTGAGAAAGGGAAAACAATTGGCGCCCTCAAGCTGTTGGATTTTTGCCTCGAGAGAGATTGCAGTGTAGATTTCTCAAGCTATGATAAGGTGTTGGATGCTCTCTTGGAAGCAGGGAAGACTCTTAATGCATACTCAATATTGTGTAAAATAATGGAGAAAGGAGAGGCCTCCGATTGGAGTAGCACCAAAGATTTGATTAAGAGCCTAAATCAAGAGGGTAACACGAAACAAGCAGATATCCTCTCCAGAATGATAAAGGGAGGGGAGAAAAGCGGTCAGAGCAAAAAAGGAAAGAAAGAAGCTGTTGTTGCTTCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

761

Amino Acids

85.59

Weight (kDa)

8.64

Isoelectric Point (pI)

39.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_3	PF13812	205 - 261	1.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	221 - 264	6.4e-09	PPR repeat family
PPR_2	PF13041	256 - 299	7.8e-15	PPR repeat family
PPR_long	PF17177	270 - 366	8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	277 - 335	1.6e-10	Pentatricopeptide repeat domain
PPR_1	PF12854	283 - 314	3.4e-09	PPR repeat
PPR_2	PF13041	287 - 335	3.9e-15	PPR repeat family
PPR	PF01535	290 - 320	1.9e-07	PPR repeat
PPR_long	PF17177	305 - 393	1.7e-06	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	311 - 366	4.4e-12	Pentatricopeptide repeat domain
PPR_1	PF12854	318 - 351	3e-10	PPR repeat
PPR_2	PF13041	322 - 370	1.9e-18	PPR repeat family
PPR	PF01535	326 - 355	2.2e-08	PPR repeat
PPR_long	PF17177	340 - 459	6.7e-09	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	354 - 386	8.9e-09	PPR repeat
PPR_2	PF13041	506 - 551	3.1e-07	PPR repeat family
TPR_24	PF23276	518 - 633	3.4e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	3 cut(s)	771, 876, 1428
Acc65I	GGTACC	1 cut(s)	316
AccB1I	GGYRCC	2 cut(s)	316, 1985
AccBSI	CCGCTC	1 cut(s)	406
AccII	CGCG	2 cut(s)	432, 696
AccIII	TCCGGA	2 cut(s)	306, 410
AclWI	GGATC	2 cut(s)	298, 1601
AcoI	YGGCCR	1 cut(s)	697
AcsI	RAATTY	4 cut(s)	323, 469, 852, 1564
AcuI	CTGAAG	4 cut(s)	67, 156, 376, 1497
AcyI	GRCGYC	1 cut(s)	1986
AfaI	GTAC	4 cut(s)	8, 318, 896, 1930
AfeI	AGCGCT	1 cut(s)	1893
AfiI	CCNNNNNNNGG	6 cut(s)	33, 313, 518, 822, 865, 2139
AflIII	ACRYGT	1 cut(s)	1140
AjnI	CCWGG	3 cut(s)	278, 1288, 1615
AjuI	GAANNNNNNNTTGG	2 cut(s)	1823, 1855
Alw21I	GWGCWC	1 cut(s)	378
Alw26I	GTCTC	3 cut(s)	428, 659, 806
AlwI	GGATC	2 cut(s)	298, 1601
AlwNI	CAGNNNCTG	2 cut(s)	1244, 1289
Ama87I	CYCGRG	1 cut(s)	2012
Aor13HI	TCCGGA	2 cut(s)	306, 410
Aor51HI	AGCGCT	1 cut(s)	1893
AoxI	GGCC	6 cut(s)	276, 463, 681, 697, 1391, 2130
ApeKI	GCWGC	5 cut(s)	176, 179, 214, 1241, 1354
ApoI	RAATTY	4 cut(s)	323, 469, 852, 1564
Asp718I	GGTACC	1 cut(s)	316
AspLEI	GCGC	4 cut(s)	362, 693, 1894, 1988
AspS9I	GGNCC	6 cut(s)	276, 408, 463, 538, 1392, 1612
AsuC2I	CCSGG	3 cut(s)	289, 490, 1101
AsuHPI	GGTGA	3 cut(s)	1679, 1722, 1834
AvaI	CYCGRG	1 cut(s)	2012
AvaII	GGWCC	3 cut(s)	408, 538, 1612
BanI	GGYRCC	2 cut(s)	316, 1985
BanII	GRGCYC	1 cut(s)	756
BbsI	GAAGAC	2 cut(s)	245, 2087
Bbv12I	GWGCWC	1 cut(s)	378
BbvI	GCAGC	5 cut(s)	188, 191, 226, 1228, 1341
BccI	CCATC	7 cut(s)	27, 259, 554, 703, 907, 1147, 1763
BceAI	ACGGC	2 cut(s)	373, 583
BcgI	CGANNNNNNTGC	6 cut(s)	206, 240, 274, 308, 344, 378
BciT130I	CCWGG	3 cut(s)	280, 1290, 1617
BciVI	GTATCC	1 cut(s)	1313
BcnI	CCSGG	3 cut(s)	289, 490, 1101
BcoDI	GTCTC	3 cut(s)	428, 659, 806
BfaI	CTAG	1 cut(s)	1419
BfmI	CTRYAG	2 cut(s)	159, 256
BfoI	RGCGCY	3 cut(s)	363, 1895, 1989
BfuI	GTATCC	1 cut(s)	1313
BglI	GCCNNNNNGGC	3 cut(s)	116, 146, 760
BlpI	GCTNAGC	1 cut(s)	1271
Bme1390I	CCNGG	6 cut(s)	280, 289, 490, 1101, 1290, 1617
Bme18I	GGWCC	3 cut(s)	408, 538, 1612
BmeT110I	CYCGRG	1 cut(s)	2012
BmgT120I	GGNCC	6 cut(s)	276, 408, 463, 538, 1392, 1612
BmiI	GGNNCC	6 cut(s)	109, 318, 1394, 1613, 1614, 1987
BmrFI	CCNGG	6 cut(s)	280, 289, 490, 1101, 1290, 1617
BmrI	ACTGGG	1 cut(s)	379
BmsI	GCATC	5 cut(s)	504, 1015, 1453, 1669, 2050
BmuI	ACTGGG	1 cut(s)	379
BoxI	GACNNNNGTC	1 cut(s)	197
BpiI	GAAGAC	2 cut(s)	245, 2087
BpmI	CTGGAG	3 cut(s)	1350, 1638, 2194
Bpu10I	CCTNAGC	1 cut(s)	210
Bpu1102I	GCTNAGC	1 cut(s)	1271
BpuEI	CTTGAG	5 cut(s)	641, 1238, 1678, 1976, 2023
BpuMI	CCSGG	3 cut(s)	289, 490, 1101
Bsa29I	ATCGAT	1 cut(s)	1905
BsaHI	GRCGYC	1 cut(s)	1986
BsaI	GGTCTC	2 cut(s)	428, 806
BsaJI	CCNNGG	5 cut(s)	694, 1100, 1176, 1456, 1615
BsaWI	WCCGGW	3 cut(s)	104, 306, 410
Bsc4I	CCNNNNNNNGG	6 cut(s)	33, 313, 518, 822, 865, 2139
Bse118I	RCCGGY	2 cut(s)	699, 1672
Bse1I	ACTGG	1 cut(s)	374
Bse3DI	GCAATG	2 cut(s)	738, 1266
BseAI	TCCGGA	2 cut(s)	306, 410
BseBI	CCWGG	3 cut(s)	280, 1290, 1617
BseCI	ATCGAT	1 cut(s)	1905
BseDI	CCNNGG	5 cut(s)	694, 1100, 1176, 1456, 1615
BseGI	GGATG	5 cut(s)	495, 922, 1132, 1931, 2065
BseLI	CCNNNNNNNGG	6 cut(s)	33, 313, 518, 822, 865, 2139
BseMI	GCAATG	2 cut(s)	738, 1266
BseMII	CTCAG	5 cut(s)	71, 1107, 1262, 1949, 1956
BseNI	ACTGG	1 cut(s)	374
BseRI	GAGGAG	1 cut(s)	62
BseX3I	CGGCCG	1 cut(s)	697
BseXI	GCAGC	5 cut(s)	188, 191, 226, 1228, 1341
BseYI	CCCAGC	2 cut(s)	184, 1894
BsgI	GTGCAG	1 cut(s)	665
Bsh1236I	CGCG	2 cut(s)	432, 696
Bsh1285I	CGRYCG	2 cut(s)	430, 700
BshFI	GGCC	6 cut(s)	278, 465, 683, 699, 1393, 2132
BshNI	GGYRCC	2 cut(s)	316, 1985
BshVI	ATCGAT	1 cut(s)	1905
BsiEI	CGRYCG	2 cut(s)	430, 700
BsiHKAI	GWGCWC	1 cut(s)	378
BsiHKCI	CYCGRG	1 cut(s)	2012
BslFI	GGGAC	4 cut(s)	46, 185, 1598, 1911
BslI	CCNNNNNNNGG	6 cut(s)	33, 313, 518, 822, 865, 2139
BsmAI	GTCTC	3 cut(s)	428, 659, 806
BsmFI	GGGAC	4 cut(s)	46, 185, 1598, 1911
BsmI	GAATGC	2 cut(s)	1078, 1275
BsnI	GGCC	6 cut(s)	278, 465, 683, 699, 1393, 2132
Bso31I	GGTCTC	2 cut(s)	428, 806
BsoBI	CYCGRG	1 cut(s)	2012
Bsp1286I	GDGCHC	2 cut(s)	378, 756
Bsp13I	TCCGGA	2 cut(s)	306, 410
Bsp1407I	TGTACA	1 cut(s)	1928
Bsp143I	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
Bsp1720I	GCTNAGC	1 cut(s)	1271
Bsp19I	CCATGG	1 cut(s)	1456
BspANI	GGCC	6 cut(s)	278, 465, 683, 699, 1393, 2132
BspCNI	CTCAG	5 cut(s)	70, 1108, 1263, 1948, 1957
BspDI	ATCGAT	1 cut(s)	1905
BspEI	TCCGGA	2 cut(s)	306, 410
BspFNI	CGCG	2 cut(s)	432, 696
BspHI	TCATGA	1 cut(s)	795
BspLI	GGNNCC	6 cut(s)	109, 318, 1394, 1613, 1614, 1987
BspMAI	CTGCAG	1 cut(s)	260
BspPI	GGATC	2 cut(s)	298, 1601
BspT107I	GGYRCC	2 cut(s)	316, 1985
BspTNI	GGTCTC	2 cut(s)	428, 806
BsrBI	CCGCTC	1 cut(s)	406
BsrDI	GCAATG	2 cut(s)	738, 1266
BsrFI	RCCGGY	2 cut(s)	699, 1672
BsrGI	TGTACA	1 cut(s)	1928
BsrI	ACTGG	1 cut(s)	374
BssAI	RCCGGY	2 cut(s)	699, 1672
BssECI	CCNNGG	5 cut(s)	694, 1100, 1176, 1456, 1615
BssMI	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
BssNI	GRCGYC	1 cut(s)	1986
BssT1I	CCWWGG	2 cut(s)	1176, 1456
Bst2UI	CCWGG	3 cut(s)	280, 1290, 1617
Bst4CI	ACNGT	2 cut(s)	221, 1700
Bst6I	CTCTTC	4 cut(s)	86, 548, 836, 1796
BstACI	GRCGYC	1 cut(s)	1986
BstAUI	TGTACA	1 cut(s)	1928
BstC8I	GCNNGC	7 cut(s)	378, 524, 577, 592, 1551, 1715, 1789
BstDEI	CTNAG	7 cut(s)	57, 210, 714, 1116, 1271, 1935, 1965
BstDSI	CCRYGG	2 cut(s)	694, 1456
BstF5I	GGATG	5 cut(s)	495, 922, 1132, 1931, 2065
BstFNI	CGCG	2 cut(s)	432, 696
BstH2I	RGCGCY	3 cut(s)	363, 1895, 1989
BstHHI	GCGC	4 cut(s)	362, 693, 1894, 1988
BstKTI	GATC	5 cut(s)	306, 865, 1342, 1596, 1909
BstMAI	GTCTC	3 cut(s)	428, 659, 806
BstMBI	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
BstMCI	CGRYCG	2 cut(s)	430, 700
BstNI	CCWGG	3 cut(s)	280, 1290, 1617
BstNSI	RCATGY	3 cut(s)	511, 1144, 1553
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	6 cut(s)	278, 287, 488, 1099, 1288, 1615
BstSFI	CTRYAG	2 cut(s)	159, 256
BstUI	CGCG	2 cut(s)	432, 696
BstV1I	GCAGC	5 cut(s)	188, 191, 226, 1228, 1341
BstV2I	GAAGAC	2 cut(s)	245, 2087
BstXI	CCANNNNNNTGG	1 cut(s)	1855
BstZI	CGGCCG	1 cut(s)	697
Bsu15I	ATCGAT	1 cut(s)	1905
BsuI	GTATCC	1 cut(s)	1313
BsuRI	GGCC	6 cut(s)	278, 465, 683, 699, 1393, 2132
BsuTUI	ATCGAT	1 cut(s)	1905
BtgI	CCRYGG	2 cut(s)	694, 1456
BtsCI	GGATG	5 cut(s)	495, 922, 1132, 1931, 2065
BtsI	GCAGTG	1 cut(s)	2032
BtsIMutI	CAGTG	2 cut(s)	132, 2032
Cac8I	GCNNGC	7 cut(s)	378, 524, 577, 592, 1551, 1715, 1789
CaiI	CAGNNNCTG	2 cut(s)	1244, 1289
CciI	TCATGA	1 cut(s)	795
CfoI	GCGC	4 cut(s)	362, 693, 1894, 1988
Cfr10I	RCCGGY	2 cut(s)	699, 1672
Cfr13I	GGNCC	6 cut(s)	276, 408, 463, 538, 1392, 1612
Cfr42I	CCGCGG	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	1905
CpoI	CGGWCCG	1 cut(s)	408
Csp6I	GTAC	4 cut(s)	7, 317, 895, 1929
CspI	CGGWCCG	1 cut(s)	408
CviQI	GTAC	4 cut(s)	7, 317, 895, 1929
DdeI	CTNAG	7 cut(s)	57, 210, 714, 1116, 1271, 1935, 1965
DinI	GGCGCC	1 cut(s)	1987
DpnI	GATC	5 cut(s)	305, 864, 1341, 1595, 1908
DpnII	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
EaeI	YGGCCR	1 cut(s)	697
EagI	CGGCCG	1 cut(s)	697
Eam1104I	CTCTTC	4 cut(s)	86, 548, 836, 1796
EarI	CTCTTC	4 cut(s)	86, 548, 836, 1796
EciI	GGCGGA	2 cut(s)	65, 118
EclXI	CGGCCG	1 cut(s)	697
Eco130I	CCWWGG	2 cut(s)	1176, 1456
Eco147I	AGGCCT	1 cut(s)	2132
Eco24I	GRGCYC	1 cut(s)	756
Eco31I	GGTCTC	2 cut(s)	428, 806
Eco32I	GATATC	1 cut(s)	2203
Eco47I	GGWCC	3 cut(s)	408, 538, 1612
Eco47III	AGCGCT	1 cut(s)	1893
Eco52I	CGGCCG	1 cut(s)	697
Eco57I	CTGAAG	4 cut(s)	67, 156, 376, 1497
Eco88I	CYCGRG	1 cut(s)	2012
EcoO109I	RGGNCCY	3 cut(s)	538, 1392, 1612
EcoRI	GAATTC	1 cut(s)	323
EcoRII	CCWGG	3 cut(s)	278, 1288, 1615
EcoRV	GATATC	1 cut(s)	2203
EcoT14I	CCWWGG	2 cut(s)	1176, 1456
EcoT22I	ATGCAT	1 cut(s)	2095
EcoT38I	GRGCYC	1 cut(s)	756
EgeI	GGCGCC	1 cut(s)	1987
EheI	GGCGCC	1 cut(s)	1987
ErhI	CCWWGG	2 cut(s)	1176, 1456
FaqI	GGGAC	4 cut(s)	46, 185, 1598, 1911
FauI	CCCGC	2 cut(s)	568, 1706
FokI	GGATG	5 cut(s)	482, 929, 1139, 1938, 2072
FriOI	GRGCYC	1 cut(s)	756
FspBI	CTAG	1 cut(s)	1419
GlaI	GCGC	4 cut(s)	361, 692, 1893, 1987
GsaI	CCCAGC	2 cut(s)	188, 1898
GsuI	CTGGAG	3 cut(s)	1350, 1638, 2194
HaeII	RGCGCY	3 cut(s)	363, 1895, 1989
HaeIII	GGCC	6 cut(s)	278, 465, 683, 699, 1393, 2132
HhaI	GCGC	4 cut(s)	362, 693, 1894, 1988
Hin1I	GRCGYC	1 cut(s)	1986
Hin6I	GCGC	4 cut(s)	360, 691, 1892, 1986
HinP1I	GCGC	4 cut(s)	360, 691, 1892, 1986
HindIII	AAGCTT	1 cut(s)	1364
HphI	GGTGA	3 cut(s)	1679, 1722, 1834
Hpy166II	GTNNAC	3 cut(s)	1138, 1670, 1931
Hpy188I	TCNGA	5 cut(s)	366, 1161, 1570, 2137, 2244
Hpy8I	GTNNAC	3 cut(s)	1138, 1670, 1931
Hpy99I	CGWCG	1 cut(s)	536
HpyAV	CCTTC	7 cut(s)	509, 625, 940, 1537, 1553, 1810, 1819
HpyCH4III	ACNGT	2 cut(s)	221, 1700
HpyF3I	CTNAG	7 cut(s)	57, 210, 714, 1116, 1271, 1935, 1965
Hsp92I	GRCGYC	1 cut(s)	1986
HspAI	GCGC	4 cut(s)	360, 691, 1892, 1986
KasI	GGCGCC	1 cut(s)	1985
KflI	GGGWCCC	1 cut(s)	1612
Kpn2I	TCCGGA	2 cut(s)	306, 410
KpnI	GGTACC	1 cut(s)	320
KspI	CCGCGG	1 cut(s)	697
Kzo9I	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
LmnI	GCTCC	4 cut(s)	75, 107, 373, 1177
Lsp1109I	GCAGC	5 cut(s)	188, 191, 226, 1228, 1341
LweI	GCATC	5 cut(s)	504, 1015, 1453, 1669, 2050
MaeI	CTAG	1 cut(s)	1419
MaeIII	GTNAC	5 cut(s)	868, 1078, 1638, 1728, 2183
MalI	GATC	5 cut(s)	305, 864, 1341, 1595, 1908
MbiI	CCGCTC	1 cut(s)	406
MboI	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
MfeI	CAATTG	1 cut(s)	1980
MhlI	GDGCHC	2 cut(s)	378, 756
Mly113I	GGCGCC	1 cut(s)	1986
MlyI	GAGTC	5 cut(s)	134, 614, 1736, 1765, 2077
MmeI	TCCRAC	3 cut(s)	1392, 1980, 2037
Mph1103I	ATGCAT	1 cut(s)	2095
MroI	TCCGGA	2 cut(s)	306, 410
MspA1I	CMGCKG	4 cut(s)	116, 146, 696, 1241
MspR9I	CCNGG	6 cut(s)	280, 289, 490, 1101, 1290, 1617
MunI	CAATTG	1 cut(s)	1980
Mva1269I	GAATGC	2 cut(s)	1078, 1275
MvaI	CCWGG	3 cut(s)	280, 1290, 1617
MvnI	CGCG	2 cut(s)	432, 696
NarI	GGCGCC	1 cut(s)	1986
NciI	CCSGG	3 cut(s)	289, 490, 1101
NcoI	CCATGG	1 cut(s)	1456
NdeII	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
NlaIV	GGNNCC	6 cut(s)	109, 318, 1394, 1613, 1614, 1987
NmeAIII	GCCGAG	1 cut(s)	1817
NmuCI	GTSAC	2 cut(s)	1078, 1728
NsiI	ATGCAT	1 cut(s)	2095
NspI	RCATGY	3 cut(s)	511, 1144, 1553
PaeI	GCATGC	1 cut(s)	1553
PaeR7I	CTCGAG	1 cut(s)	2012
PagI	TCATGA	1 cut(s)	795
PceI	AGGCCT	1 cut(s)	2132
PciI	ACATGT	1 cut(s)	1140
PctI	GAATGC	2 cut(s)	1078, 1275
PleI	GAGTC	5 cut(s)	133, 613, 1735, 1764, 2077
PluTI	GGCGCC	1 cut(s)	1989
PpsI	GAGTC	5 cut(s)	133, 613, 1735, 1764, 2077
PpuMI	RGGWCCY	2 cut(s)	538, 1612
PscI	ACATGT	1 cut(s)	1140
PshAI	GACNNNNGTC	1 cut(s)	197
PsiI	TTATAA	3 cut(s)	771, 876, 1428
Psp5II	RGGWCCY	2 cut(s)	538, 1612
Psp6I	CCWGG	3 cut(s)	278, 1288, 1615
PspFI	CCCAGC	2 cut(s)	184, 1894
PspGI	CCWGG	3 cut(s)	278, 1288, 1615
PspN4I	GGNNCC	6 cut(s)	109, 318, 1394, 1613, 1614, 1987
PspPI	GGNCC	6 cut(s)	276, 408, 463, 538, 1392, 1612
PspPPI	RGGWCCY	2 cut(s)	538, 1612
PstI	CTGCAG	1 cut(s)	260
PstNI	CAGNNNCTG	2 cut(s)	1244, 1289
PvuII	CAGCTG	1 cut(s)	1241
RsaI	GTAC	4 cut(s)	8, 318, 896, 1930
RsaNI	GTAC	4 cut(s)	7, 317, 895, 1929
Rsr2I	CGGWCCG	1 cut(s)	408
RsrII	CGGWCCG	1 cut(s)	408
SacII	CCGCGG	1 cut(s)	697
Sau3AI	GATC	5 cut(s)	303, 862, 1339, 1593, 1906
Sau96I	GGNCC	6 cut(s)	276, 408, 463, 538, 1392, 1612
SchI	GAGTC	5 cut(s)	134, 614, 1736, 1765, 2077
ScrFI	CCNGG	6 cut(s)	280, 289, 490, 1101, 1290, 1617
SduI	GDGCHC	2 cut(s)	378, 756
SfaNI	GCATC	5 cut(s)	504, 1015, 1453, 1669, 2050
SfcI	CTRYAG	2 cut(s)	159, 256
SfoI	GGCGCC	1 cut(s)	1987
Sfr274I	CTCGAG	1 cut(s)	2012
Sfr303I	CCGCGG	1 cut(s)	697
SgrBI	CCGCGG	1 cut(s)	697
SinI	GGWCC	3 cut(s)	408, 538, 1612
SlaI	CTCGAG	1 cut(s)	2012
SmlI	CTYRAG	6 cut(s)	656, 1253, 1657, 1991, 2012, 2038
SmoI	CTYRAG	6 cut(s)	656, 1253, 1657, 1991, 2012, 2038
SphI	GCATGC	1 cut(s)	1553
SseBI	AGGCCT	1 cut(s)	2132
SspDI	GGCGCC	1 cut(s)	1985
SspI	AATATT	1 cut(s)	2103
SspMI	CTAG	1 cut(s)	1419
StuI	AGGCCT	1 cut(s)	2132
StyD4I	CCNGG	6 cut(s)	278, 287, 488, 1099, 1288, 1615
StyI	CCWWGG	2 cut(s)	1176, 1456
TaaI	ACNGT	2 cut(s)	221, 1700
TaqI	TCGA	9 cut(s)	43, 226, 302, 327, 531, 1342, 1407, 1905, 2013
TatI	WGTACW	1 cut(s)	1928
TauI	GCSGC	6 cut(s)	119, 149, 167, 170, 696, 699
TscAI	CASTG	2 cut(s)	139, 2032
TseFI	GTSAC	2 cut(s)	1078, 1728
TseI	GCWGC	5 cut(s)	176, 179, 214, 1241, 1354
Tsp45I	GTSAC	2 cut(s)	1078, 1728
TspDTI	ATGAA	8 cut(s)	644, 784, 854, 878, 1064, 1143, 1514, 1814
TspRI	CASTG	2 cut(s)	139, 2032
VpaK11BI	GGWCC	3 cut(s)	408, 538, 1612
XapI	RAATTY	4 cut(s)	323, 469, 852, 1564
XceI	RCATGY	3 cut(s)	511, 1144, 1553
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1690
XhoI	CTCGAG	1 cut(s)	2012
XspI	CTAG	1 cut(s)	1419
Zsp2I	ATGCAT	1 cut(s)	2095

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.