Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

38500540 .. 38504738

Gene Structure 4199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG204600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGCCATCAATGGCTTACATTTCTCTCTCCAAACCCTCCCAATGGCGACCCCGCTCCCTCACCCTCCTCCGCCTCTTCTGCTCCTCCACCGAAACCCCGACCCCCCAACCCGACCCGCAAAATGGATCCTCCGCCGCAGCCCCGACGGCCCCAAGGCCCAGGCAGCCGCGTCGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGCTGCAGAACTCCATCCGCGATTTGGTACCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATAATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGCATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTTTTCATTCATCTTATTGATAGTTATGGCAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAGCTGGGCGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGCAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTCGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGATTGGAGACTGCCAAGCGGTTTTTTGAGGACATGAAAAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTTTCAAGAGATGAAGTCTTTTGGTATCAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATATTGTCAGTGTAAGTCCGGAGATTTGGATGCGGCTGCTGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTATGAGGCCCCAGACTACTTTGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCACTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGACAGCCTCTTATCTCTTCTTGCTGAAAAGGGAAAGACCATTGCAGCTATTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGCATCAGGAAAGACTCTAAATGCGTACTCAATTTTGTGTAAAATAATGGATAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAAAGATAAAGGGAGGGGAGGCAAAAGCCAGTCGAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGATTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

743

Amino Acids

83.97

Weight (kDa)

8.85

Isoelectric Point (pI)

39.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	200 - 243	1.2e-06	PPR repeat family
PPR_3	PF13812	222 - 278	5.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	235 - 278	2.4e-14	PPR repeat family
PPR_3	PF13812	255 - 314	8.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 293	4.3e-10	PPR repeat
PPR_2	PF13041	266 - 314	3.7e-16	PPR repeat family
PPR	PF01535	269 - 299	2.1e-07	PPR repeat
PPR_3	PF13812	290 - 345	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 330	3.3e-09	PPR repeat
PPR_2	PF13041	301 - 350	1e-17	PPR repeat family
PPR	PF01535	304 - 334	4.6e-08	PPR repeat
PPR_long	PF17177	319 - 438	5e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	324 - 371	3.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	333 - 365	2.4e-07	PPR repeat
PPR_2	PF13041	485 - 530	1.7e-07	PPR repeat family
TPR_24	PF23276	496 - 612	3e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	708, 911
AatII	GACGTC	1 cut(s)	2142
Acc16I	TGCGCA	1 cut(s)	629
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	2 cut(s)	54, 586
AccII	CGCG	3 cut(s)	169, 261, 1731
AccIII	TCCGGA	2 cut(s)	177, 1160
AclWI	GGATC	3 cut(s)	120, 133, 1471
AcsI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
AcuI	CTGAAG	2 cut(s)	1408, 1434
AcyI	GRCGYC	1 cut(s)	2139
AfaI	GTAC	3 cut(s)	270, 659, 2033
AfiI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
AjnI	CCWGG	4 cut(s)	158, 230, 362, 1036
AloI	GAACNNNNNNTCC	2 cut(s)	950, 982
Alw21I	GWGCWC	2 cut(s)	1191, 1870
Alw26I	GTCTC	3 cut(s)	380, 596, 743
Alw44I	GTGCAC	1 cut(s)	1866
AlwI	GGATC	3 cut(s)	120, 133, 1471
AlwNI	CAGNNNCTG	1 cut(s)	1226
Ama87I	CYCGRG	2 cut(s)	194, 1949
Aor13HI	TCCGGA	2 cut(s)	177, 1160
AoxI	GGCC	9 cut(s)	147, 155, 228, 415, 525, 858, 1039, 1263, 1328
ApaLI	GTGCAC	1 cut(s)	1866
ApeKI	GCWGC	6 cut(s)	137, 163, 244, 1178, 1207, 1922
ApoI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
AseI	ATTAAT	1 cut(s)	825
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	630
AspS9I	GGNCC	7 cut(s)	148, 156, 175, 228, 415, 490, 1329
AsuC2I	CCSGG	4 cut(s)	185, 241, 442, 1267
AsuHPI	GGTGA	4 cut(s)	52, 799, 1009, 1616
AsuII	TTCGAA	1 cut(s)	425
AvaI	CYCGRG	2 cut(s)	194, 1949
AvaII	GGWCC	2 cut(s)	175, 490
BaeGI	GKGCMC	1 cut(s)	1870
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	1191, 1870
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	6 cut(s)	149, 175, 231, 1165, 1194, 1934
BceAI	ACGGC	2 cut(s)	162, 1737
BcgI	CGANNNNNNTGC	6 cut(s)	152, 186, 226, 260, 1015, 1049
BciT130I	CCWGG	4 cut(s)	160, 232, 364, 1038
BciVI	GTATCC	1 cut(s)	1250
BcnI	CCSGG	4 cut(s)	185, 241, 442, 1267
BcoDI	GTCTC	3 cut(s)	380, 596, 743
BfaI	CTAG	5 cut(s)	455, 1356, 1554, 2114, 2148
BfmI	CTRYAG	2 cut(s)	208, 245
BfuI	GTATCC	1 cut(s)	1250
BglI	GCCNNNNNGGC	2 cut(s)	146, 697
BglII	AGATCT	1 cut(s)	1788
Bme1390I	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
Bme18I	GGWCC	2 cut(s)	175, 490
BmeT110I	CYCGRG	2 cut(s)	194, 1949
BmgT120I	GGNCC	7 cut(s)	148, 156, 175, 228, 415, 490, 1329
BmiI	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
BmrFI	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
BmsI	GCATC	7 cut(s)	456, 1039, 1162, 1390, 1606, 1987, 2018
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	425
BpuEI	CTTGAG	3 cut(s)	578, 760, 1175
BpuMI	CCSGG	4 cut(s)	185, 241, 442, 1267
BsaHI	GRCGYC	1 cut(s)	2139
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	8 cut(s)	152, 158, 195, 1113, 1266, 1393, 1480, 1491
BsaWI	WCCGGW	2 cut(s)	177, 1160
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	1 cut(s)	2178
Bse3DI	GCAATG	3 cut(s)	485, 1203, 1917
BseAI	TCCGGA	2 cut(s)	177, 1160
BseBI	CCWGG	4 cut(s)	160, 232, 364, 1038
BseDI	CCNNGG	8 cut(s)	152, 158, 195, 1113, 1266, 1393, 1480, 1491
BseGI	GGATG	8 cut(s)	255, 447, 490, 859, 964, 1069, 1177, 2002
BseLI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
BseMI	GCAATG	3 cut(s)	485, 1203, 1917
BseMII	CTCAG	2 cut(s)	669, 1085
BseNI	ACTGG	1 cut(s)	2178
BseRI	GAGGAG	3 cut(s)	56, 73, 801
BseSI	GKGCMC	1 cut(s)	1870
BseXI	GCAGC	6 cut(s)	149, 175, 231, 1165, 1194, 1934
BseYI	CCCAGC	1 cut(s)	574
BsgI	GTGCAG	1 cut(s)	1193
Bsh1236I	CGCG	3 cut(s)	169, 261, 1731
BshFI	GGCC	9 cut(s)	149, 157, 230, 417, 527, 860, 1041, 1265, 1330
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	1191, 1870
BsiHKCI	CYCGRG	2 cut(s)	194, 1949
BsiSI	CCGG	7 cut(s)	178, 185, 241, 442, 528, 1161, 1266
BslI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
BsmAI	GTCTC	3 cut(s)	380, 596, 743
BsnI	GGCC	9 cut(s)	149, 157, 230, 417, 527, 860, 1041, 1265, 1330
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	194, 1949
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	185, 1191, 1870
Bsp13I	TCCGGA	2 cut(s)	177, 1160
Bsp143I	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
Bsp19I	CCATGG	1 cut(s)	1393
BspANI	GGCC	9 cut(s)	149, 157, 230, 417, 527, 860, 1041, 1265, 1330
BspCNI	CTCAG	2 cut(s)	670, 1084
BspEI	TCCGGA	2 cut(s)	177, 1160
BspFNI	CGCG	3 cut(s)	169, 261, 1731
BspLI	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
BspMAI	CTGCAG	2 cut(s)	212, 249
BspPI	GGATC	3 cut(s)	120, 133, 1471
BspT104I	TTCGAA	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	2 cut(s)	54, 586
BsrDI	GCAATG	3 cut(s)	485, 1203, 1917
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	1 cut(s)	2178
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	8 cut(s)	152, 158, 195, 1113, 1266, 1393, 1480, 1491
BssMI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
BssNI	GRCGYC	1 cut(s)	2139
BssT1I	CCWWGG	4 cut(s)	152, 1113, 1393, 1491
Bst2UI	CCWGG	4 cut(s)	160, 232, 364, 1038
Bst4CI	ACNGT	1 cut(s)	1637
Bst6I	CTCTTC	6 cut(s)	80, 647, 1427, 1537, 1733, 1899
BstACI	GRCGYC	1 cut(s)	2139
BstAPI	GCANNNNNTGC	1 cut(s)	2213
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	4 cut(s)	529, 1488, 1726, 2209
BstDEI	CTNAG	4 cut(s)	678, 1071, 1595, 2005
BstDSI	CCRYGG	2 cut(s)	1393, 1480
BstF5I	GGATG	8 cut(s)	255, 447, 490, 859, 964, 1069, 1177, 2002
BstFNI	CGCG	3 cut(s)	169, 261, 1731
BstHHI	GCGC	1 cut(s)	630
BstKTI	GATC	6 cut(s)	128, 1279, 1479, 1791, 1846, 2095
BstMAI	GTCTC	3 cut(s)	380, 596, 743
BstMBI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
BstNI	CCWGG	4 cut(s)	160, 232, 364, 1038
BstNSI	RCATGY	3 cut(s)	1490, 1658, 2207
BstSCI	CCNGG	8 cut(s)	158, 183, 230, 239, 362, 440, 1036, 1265
BstSFI	CTRYAG	2 cut(s)	208, 245
BstSLI	GKGCMC	1 cut(s)	1870
BstUI	CGCG	3 cut(s)	169, 261, 1731
BstV1I	GCAGC	6 cut(s)	149, 175, 231, 1165, 1194, 1934
BstX2I	RGATCY	2 cut(s)	125, 1788
BstXI	CCANNNNNNTGG	1 cut(s)	1792
BstYI	RGATCY	2 cut(s)	125, 1788
BsuI	GTATCC	1 cut(s)	1250
BsuRI	GGCC	9 cut(s)	149, 157, 230, 417, 527, 860, 1041, 1265, 1330
BtgI	CCRYGG	2 cut(s)	1393, 1480
BtsCI	GGATG	8 cut(s)	255, 447, 490, 859, 964, 1069, 1177, 2002
BtsIMutI	CAGTG	3 cut(s)	1157, 2070, 2085
Cac8I	GCNNGC	4 cut(s)	529, 1488, 1726, 2209
CaiI	CAGNNNCTG	1 cut(s)	1226
CfoI	GCGC	1 cut(s)	630
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	7 cut(s)	148, 156, 175, 228, 415, 490, 1329
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	269, 658, 2032
CviQI	GTAC	3 cut(s)	269, 658, 2032
DdeI	CTNAG	4 cut(s)	678, 1071, 1595, 2005
DpnI	GATC	6 cut(s)	127, 1278, 1478, 1790, 1845, 2094
DpnII	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
DraI	TTTAAA	1 cut(s)	1527
Eam1104I	CTCTTC	6 cut(s)	80, 647, 1427, 1537, 1733, 1899
EarI	CTCTTC	6 cut(s)	80, 647, 1427, 1537, 1733, 1899
EciI	GGCGGA	2 cut(s)	59, 121
Eco130I	CCWWGG	4 cut(s)	152, 1113, 1393, 1491
Eco147I	AGGCCT	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	175, 490
Eco57I	CTGAAG	2 cut(s)	1408, 1434
Eco88I	CYCGRG	2 cut(s)	194, 1949
EcoO109I	RGGNCCY	2 cut(s)	490, 1329
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	4 cut(s)	158, 230, 362, 1036
EcoT14I	CCWWGG	4 cut(s)	152, 1113, 1393, 1491
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	4 cut(s)	152, 1113, 1393, 1491
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FauI	CCCGC	2 cut(s)	59, 123
FauNDI	CATATG	1 cut(s)	669
FokI	GGATG	8 cut(s)	242, 434, 497, 866, 971, 1076, 1184, 2009
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	5 cut(s)	455, 1356, 1554, 2114, 2148
FspI	TGCGCA	1 cut(s)	629
GlaI	GCGC	1 cut(s)	629
GsaI	CCCAGC	1 cut(s)	578
HaeIII	GGCC	9 cut(s)	149, 157, 230, 417, 527, 860, 1041, 1265, 1330
HapII	CCGG	7 cut(s)	178, 185, 241, 442, 528, 1161, 1266
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	630
Hin1I	GRCGYC	1 cut(s)	2139
Hin6I	GCGC	1 cut(s)	628
HinP1I	GCGC	1 cut(s)	628
HindIII	AAGCTT	1 cut(s)	551
HpaII	CCGG	7 cut(s)	178, 185, 241, 442, 528, 1161, 1266
HphI	GGTGA	4 cut(s)	52, 799, 1009, 1616
Hpy166II	GTNNAC	3 cut(s)	1288, 1607, 1868
Hpy188I	TCNGA	9 cut(s)	325, 347, 564, 1074, 1218, 1476, 1507, 1811, 2097
Hpy8I	GTNNAC	3 cut(s)	1288, 1607, 1868
Hpy99I	CGWCG	2 cut(s)	148, 174
HpyAV	CCTTC	6 cut(s)	314, 463, 562, 877, 1474, 1747
HpyCH4III	ACNGT	1 cut(s)	1637
HpyCH4IV	ACGT	1 cut(s)	2139
HpyF3I	CTNAG	4 cut(s)	678, 1071, 1595, 2005
HpySE526I	ACGT	1 cut(s)	2139
Hsp92I	GRCGYC	1 cut(s)	2139
HspAI	GCGC	1 cut(s)	628
Kpn2I	TCCGGA	2 cut(s)	177, 1160
KpnI	GGTACC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
LmnI	GCTCC	7 cut(s)	59, 86, 180, 311, 571, 583, 1114
Lsp1109I	GCAGC	6 cut(s)	149, 175, 231, 1165, 1194, 1934
LweI	GCATC	7 cut(s)	456, 1039, 1162, 1390, 1606, 1987, 2018
MaeI	CTAG	5 cut(s)	455, 1356, 1554, 2114, 2148
MaeII	ACGT	1 cut(s)	2139
MaeIII	GTNAC	4 cut(s)	805, 1015, 2068, 2120
MalI	GATC	6 cut(s)	127, 1278, 1478, 1790, 1845, 2094
MbiI	CCGCTC	2 cut(s)	54, 586
MboI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
MflI	RGATCY	2 cut(s)	125, 1788
MhlI	GDGCHC	3 cut(s)	185, 1191, 1870
MlyI	GAGTC	5 cut(s)	551, 598, 688, 1702, 2014
MmeI	TCCRAC	3 cut(s)	348, 1241, 1974
MroI	TCCGGA	2 cut(s)	177, 1160
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
MspA1I	CMGCKG	1 cut(s)	1613
MspI	CCGG	7 cut(s)	178, 185, 241, 442, 528, 1161, 1266
MspR9I	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
MvaI	CCWGG	4 cut(s)	160, 232, 364, 1038
MvnI	CGCG	3 cut(s)	169, 261, 1731
NaeI	GCCGGC	1 cut(s)	529
NciI	CCSGG	4 cut(s)	185, 241, 442, 1267
NcoI	CCATGG	1 cut(s)	1393
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
NgoMIV	GCCGGC	1 cut(s)	527
NlaIV	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
NmeAIII	GCCGAG	3 cut(s)	443, 676, 886
NmuCI	GTSAC	3 cut(s)	805, 1015, 2068
NsbI	TGCGCA	1 cut(s)	629
NspI	RCATGY	3 cut(s)	1490, 1658, 2207
NspV	TTCGAA	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	1490
PaeR7I	CTCGAG	1 cut(s)	1949
PceI	AGGCCT	1 cut(s)	1041
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	6 cut(s)	223, 409, 1454, 1508, 1565, 1664
PleI	GAGTC	5 cut(s)	550, 597, 688, 1701, 2014
PpsI	GAGTC	5 cut(s)	550, 597, 688, 1701, 2014
PpuMI	RGGWCCY	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	825
PsiI	TTATAA	2 cut(s)	708, 911
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	4 cut(s)	158, 230, 362, 1036
PspFI	CCCAGC	1 cut(s)	574
PspGI	CCWGG	4 cut(s)	158, 230, 362, 1036
PspN4I	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
PspPI	GGNCC	7 cut(s)	148, 156, 175, 228, 415, 490, 1329
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	212, 249
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	125, 1788
PvuII	CAGCTG	1 cut(s)	1613
RsaI	GTAC	3 cut(s)	270, 659, 2033
RsaNI	GTAC	3 cut(s)	269, 658, 2032
SaqAI	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
Sau3AI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
Sau96I	GGNCC	7 cut(s)	148, 156, 175, 228, 415, 490, 1329
SchI	GAGTC	5 cut(s)	551, 598, 688, 1702, 2014
ScrFI	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
SduI	GDGCHC	3 cut(s)	185, 1191, 1870
SfaNI	GCATC	7 cut(s)	456, 1039, 1162, 1390, 1606, 1987, 2018
SfcI	CTRYAG	2 cut(s)	208, 245
Sfr274I	CTCGAG	1 cut(s)	1949
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	2 cut(s)	175, 490
SlaI	CTCGAG	1 cut(s)	1949
SmlI	CTYRAG	4 cut(s)	593, 739, 1190, 1949
SmoI	CTYRAG	4 cut(s)	593, 739, 1190, 1949
SphI	GCATGC	1 cut(s)	1490
SseBI	AGGCCT	1 cut(s)	1041
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	5 cut(s)	455, 1356, 1554, 2114, 2148
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	8 cut(s)	158, 183, 230, 239, 362, 440, 1036, 1265
StyI	CCWWGG	4 cut(s)	152, 1113, 1393, 1491
TaaI	ACNGT	1 cut(s)	1637
TaiI	ACGT	1 cut(s)	2142
TaqI	TCGA	7 cut(s)	279, 354, 425, 1025, 1279, 1950, 2182
TaqII	GACCGA	1 cut(s)	535
TauI	GCSGC	4 cut(s)	137, 169, 1178, 1731
TfiI	GAWTC	6 cut(s)	223, 409, 1454, 1508, 1565, 1664
Tru1I	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
Tru9I	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
TscAI	CASTG	3 cut(s)	1157, 2077, 2092
TseFI	GTSAC	3 cut(s)	805, 1015, 2068
TseI	GCWGC	6 cut(s)	137, 163, 244, 1178, 1207, 1922
Tsp45I	GTSAC	3 cut(s)	805, 1015, 2068
TspDTI	ATGAA	8 cut(s)	487, 491, 581, 791, 1001, 1080, 1451, 1751
TspGWI	ACGGA	3 cut(s)	324, 1469, 1852
TspRI	CASTG	3 cut(s)	1157, 2077, 2092
VneI	GTGCAC	1 cut(s)	1866
VpaK11BI	GGWCC	2 cut(s)	175, 490
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
XbaI	TCTAGA	2 cut(s)	2113, 2147
XceI	RCATGY	3 cut(s)	1490, 1658, 2207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	1949
XspI	CTAG	5 cut(s)	455, 1356, 1554, 2114, 2148
ZraI	GACGTC	1 cut(s)	2140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.