Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr5

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

54656220 .. 54657732

Gene Structure 1513 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw5G032350.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1239 bp

ATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGAAAGGCCGGCATTGTTCAGGAGTTGGTTAAGCTTTTCAATCGGATGAAGGAATTGGGTGTGGAGCGAAGTCTCAAGTCGTATGAGGCTCTGTTTAAGAGCATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCACATAGGAATTAATCCTGATGTTGTCACCTATAACACGATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATGTTTGTAGGCCGAGCAGTCATTACGGTATCCTTATTGAGAACTTCTGCAAGGCTGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGGATGAAGCCCCAGAGTTCTATGGAATTGAGAAAGAAATTATTATGAGGCCCCAGAGTTCTATGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGTATCTGTGCAACCATGGGCAGACAGGTAAAGCTGCAGTCCTTTTCAGGCAGTTGATAAAAAAGGGAGTTCAGGATTCAGTTGCCTTCAATAATTTGATCCGTGGGCATGCTAAGGAAGGAAATTCTGATTCTGCTTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGATGAACCAGCTGATGCTAAAAAAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAGGATGGTAGAGTTCAAACAGCAAGCAGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTATTTGATAGCCTCTTATCTCTGCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTTGAGAGAGATTGCATGGTAGATTTGTCAAGTTATGATAAGGTGTTAGATGCATCAGGAAAGACTCTAAATGCATACTCAATTTTGTGTAAAATAATGGAGAAAGGAGGGGTTACTGATTGGCATTGCACTGATGATCAGAATCATCAGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAATGATTAAGGGAGGGGAGGAGAAAGCCGGTCGGAGTAAAAAAGGGAAGAAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

412

Amino Acids

46.51

Weight (kDa)

8.27

Isoelectric Point (pI)

35.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	72 - 102	5e-10	PPR repeat
PPR_2	PF13041	75 - 124	2e-09	PPR repeat family
PPR	PF01535	78 - 108	1.2e-07	PPR repeat
PPR_2	PF13041	195 - 239	1.4e-07	PPR repeat family
TPR_24	PF23276	207 - 307	2.2e-06	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	1176
AciI	CCGC	2 cut(s)	169, 178
AclWI	GGATC	1 cut(s)	601
AcsI	RAATTY	1 cut(s)	631
AcyI	GRCGYC	1 cut(s)	1173
AfaI	GTAC	1 cut(s)	200
AfiI	CCNNNNNNNGG	1 cut(s)	11
AgsI	TTSAA	5 cut(s)	100, 310, 598, 776, 848
AluBI	AGCT	9 cut(s)	94, 274, 542, 720, 743, 758, 959, 967, 1169
AluI	AGCT	9 cut(s)	94, 274, 542, 720, 743, 758, 959, 967, 1169
Alw26I	GTCTC	1 cut(s)	137
AlwI	GGATC	1 cut(s)	601
AoxI	GGCC	4 cut(s)	66, 285, 329, 458
ApeKI	GCWGC	3 cut(s)	542, 858, 956
ApoI	RAATTY	1 cut(s)	631
AseI	ATTAAT	2 cut(s)	219, 252
AspS9I	GGNCC	2 cut(s)	31, 459
AsuHPI	GGTGA	1 cut(s)	226
AvaII	GGWCC	1 cut(s)	31
BbvI	GCAGC	3 cut(s)	529, 870, 968
BccI	CCATC	3 cut(s)	181, 271, 830
BciVI	GTATCC	1 cut(s)	359
BclI	TGATCA	1 cut(s)	1117
BcoDI	GTCTC	1 cut(s)	137
BfaI	CTAG	4 cut(s)	486, 684, 1148, 1182
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	359
BisI	GCNGC	3 cut(s)	543, 859, 957
BlsI	GCNGC	3 cut(s)	544, 860, 958
Bme18I	GGWCC	1 cut(s)	31
BmgT120I	GGNCC	2 cut(s)	31, 459
BmiI	GGNNCC	2 cut(s)	461, 681
BmsI	GCATC	3 cut(s)	736, 1021, 1043
Bpu10I	CCTNAGC	1 cut(s)	621
BpuEI	CTTGAG	2 cut(s)	119, 1004
BsaBI	GATNNNNATC	1 cut(s)	1122
BsaHI	GRCGYC	1 cut(s)	1173
BsaJI	CCNNGG	2 cut(s)	523, 610
Bsc4I	CCNNNNNNNGG	1 cut(s)	11
Bse118I	RCCGGY	2 cut(s)	68, 1211
Bse3DI	GCAATG	3 cut(s)	26, 951, 1105
Bse8I	GATNNNNATC	1 cut(s)	1122
BseDI	CCNNGG	2 cut(s)	523, 610
BseGI	GGATG	5 cut(s)	31, 111, 286, 418, 841
BseJI	GATNNNNATC	1 cut(s)	1122
BseLI	CCNNNNNNNGG	1 cut(s)	11
BseMI	GCAATG	3 cut(s)	26, 951, 1105
BseRI	GAGGAG	1 cut(s)	1217
BseXI	GCAGC	3 cut(s)	529, 870, 968
BseYI	CCCAGC	1 cut(s)	374
Bsh1285I	CGRYCG	1 cut(s)	1216
BshFI	GGCC	4 cut(s)	68, 287, 331, 460
BsiEI	CGRYCG	1 cut(s)	1216
BsiSI	CCGG	2 cut(s)	69, 1212
BslI	CCNNNNNNNGG	1 cut(s)	11
BsmAI	GTCTC	1 cut(s)	137
BsnI	GGCC	4 cut(s)	68, 287, 331, 460
Bsp143I	GATC	3 cut(s)	385, 606, 1117
Bsp19I	CCATGG	1 cut(s)	523
BspACI	CCGC	2 cut(s)	169, 178
BspANI	GGCC	4 cut(s)	68, 287, 331, 460
BspLI	GGNNCC	2 cut(s)	461, 681
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	601
BsrDI	GCAATG	3 cut(s)	26, 951, 1105
BsrFI	RCCGGY	2 cut(s)	68, 1211
BssAI	RCCGGY	2 cut(s)	68, 1211
BssECI	CCNNGG	2 cut(s)	523, 610
BssMI	GATC	3 cut(s)	385, 606, 1117
BssNI	GRCGYC	1 cut(s)	1173
BssT1I	CCWWGG	1 cut(s)	523
Bst4CI	ACNGT	2 cut(s)	347, 767
Bst6I	CTCTTC	4 cut(s)	41, 188, 667, 863
BstACI	GRCGYC	1 cut(s)	1173
BstC8I	GCNNGC	4 cut(s)	70, 618, 856, 933
BstDEI	CTNAG	2 cut(s)	621, 725
BstDSI	CCRYGG	2 cut(s)	523, 610
BstF5I	GGATG	5 cut(s)	31, 111, 286, 418, 841
BstKTI	GATC	3 cut(s)	388, 609, 1120
BstMAI	GTCTC	1 cut(s)	137
BstMBI	GATC	3 cut(s)	385, 606, 1117
BstMCI	CGRYCG	1 cut(s)	1216
BstMWI	GCNNNNNNNGC	2 cut(s)	175, 755
BstNSI	RCATGY	2 cut(s)	620, 788
BstSFI	CTRYAG	1 cut(s)	543
BstV1I	GCAGC	3 cut(s)	529, 870, 968
BsuI	GTATCC	1 cut(s)	359
BsuRI	GGCC	4 cut(s)	68, 287, 331, 460
BtgI	CCRYGG	2 cut(s)	523, 610
BtsCI	GGATG	5 cut(s)	31, 111, 286, 418, 841
BtsIMutI	CAGTG	1 cut(s)	1110
Cac8I	GCNNGC	4 cut(s)	70, 618, 856, 933
Cfr10I	RCCGGY	2 cut(s)	68, 1211
Cfr13I	GGNCC	2 cut(s)	31, 459
Csp6I	GTAC	1 cut(s)	199
CviAII	CATG	5 cut(s)	524, 617, 785, 901, 997
CviQI	GTAC	1 cut(s)	199
DdeI	CTNAG	2 cut(s)	621, 725
DpnI	GATC	3 cut(s)	387, 608, 1119
DpnII	GATC	3 cut(s)	385, 606, 1117
DraI	TTTAAA	1 cut(s)	657
Eam1104I	CTCTTC	4 cut(s)	41, 188, 667, 863
EarI	CTCTTC	4 cut(s)	41, 188, 667, 863
Eco130I	CCWWGG	1 cut(s)	523
Eco47I	GGWCC	1 cut(s)	31
EcoO109I	RGGNCCY	2 cut(s)	31, 459
EcoT14I	CCWWGG	1 cut(s)	523
EcoT22I	ATGCAT	2 cut(s)	1036, 1057
ErhI	CCWWGG	1 cut(s)	523
FaeI	CATG	5 cut(s)	527, 620, 788, 904, 1000
FalI	AAGNNNNNCTT	2 cut(s)	185, 217
FatI	CATG	5 cut(s)	523, 616, 784, 900, 996
FbaI	TGATCA	1 cut(s)	1117
Fnu4HI	GCNGC	3 cut(s)	543, 859, 957
FokI	GGATG	5 cut(s)	38, 118, 293, 425, 848
Fsp4HI	GCNGC	3 cut(s)	543, 859, 957
FspBI	CTAG	4 cut(s)	486, 684, 1148, 1182
GluI	GCNGC	3 cut(s)	543, 859, 957
GsaI	CCCAGC	1 cut(s)	378
HaeIII	GGCC	4 cut(s)	68, 287, 331, 460
HapII	CCGG	2 cut(s)	69, 1212
Hin1I	GRCGYC	1 cut(s)	1173
Hin1II	CATG	5 cut(s)	527, 620, 788, 904, 1000
HindIII	AAGCTT	2 cut(s)	92, 756
HinfI	GANTC	7 cut(s)	584, 638, 695, 794, 823, 1045, 1123
HpaII	CCGG	2 cut(s)	69, 1212
HphI	GGTGA	1 cut(s)	226
Hpy166II	GTNNAC	1 cut(s)	397
Hpy188I	TCNGA	5 cut(s)	105, 637, 1122, 1131, 1218
Hpy188III	TCNNGA	7 cut(s)	80, 224, 581, 791, 1038, 1148, 1182
Hpy8I	GTNNAC	1 cut(s)	397
HpyAV	CCTTC	6 cut(s)	4, 103, 304, 604, 620, 877
HpyCH4III	ACNGT	2 cut(s)	347, 767
HpyCH4IV	ACGT	1 cut(s)	1173
HpyCH4V	TGCA	9 cut(s)	19, 369, 519, 545, 956, 996, 1034, 1055, 1110
HpyF10VI	GCNNNNNNNGC	2 cut(s)	175, 755
HpyF3I	CTNAG	2 cut(s)	621, 725
HpySE526I	ACGT	1 cut(s)	1173
Hsp92I	GRCGYC	1 cut(s)	1173
Hsp92II	CATG	5 cut(s)	527, 620, 788, 904, 1000
KroI	GCCGGC	1 cut(s)	68
KroNI	GCCGGC	1 cut(s)	70
Ksp22I	TGATCA	1 cut(s)	1117
Kzo9I	GATC	3 cut(s)	385, 606, 1117
LmnI	GCTCC	1 cut(s)	124
Lsp1109I	GCAGC	3 cut(s)	529, 870, 968
LweI	GCATC	3 cut(s)	736, 1021, 1043
MaeI	CTAG	4 cut(s)	486, 684, 1148, 1182
MaeII	ACGT	1 cut(s)	1173
MaeIII	GTNAC	3 cut(s)	232, 1093, 1154
MalI	GATC	3 cut(s)	387, 608, 1119
MboI	GATC	3 cut(s)	385, 606, 1117
MboII	GAAGA	4 cut(s)	28, 205, 684, 880
MluCI	AATT	8 cut(s)	113, 216, 435, 447, 476, 601, 631, 1062
MlyI	GAGTC	2 cut(s)	832, 1039
MmeI	TCCRAC	1 cut(s)	1196
Mph1103I	ATGCAT	2 cut(s)	1036, 1057
MroNI	GCCGGC	1 cut(s)	68
MspA1I	CMGCKG	2 cut(s)	743, 959
MspI	CCGG	2 cut(s)	69, 1212
MwoI	GCNNNNNNNGC	2 cut(s)	175, 755
NaeI	GCCGGC	1 cut(s)	70
NcoI	CCATGG	1 cut(s)	523
NdeII	GATC	3 cut(s)	385, 606, 1117
NgoMIV	GCCGGC	1 cut(s)	68
NlaIII	CATG	5 cut(s)	527, 620, 788, 904, 1000
NlaIV	GGNNCC	2 cut(s)	461, 681
NmeAIII	GCCGAG	2 cut(s)	313, 357
NmuCI	GTSAC	1 cut(s)	232
NsiI	ATGCAT	2 cut(s)	1036, 1057
NspI	RCATGY	2 cut(s)	620, 788
PaeI	GCATGC	1 cut(s)	620
PdiI	GCCGGC	1 cut(s)	70
PfeI	GAWTC	5 cut(s)	584, 638, 695, 794, 1123
PkrI	GCNGC	3 cut(s)	544, 860, 958
PleI	GAGTC	2 cut(s)	831, 1039
PpsI	GAGTC	2 cut(s)	831, 1039
PpuMI	RGGWCCY	1 cut(s)	31
PshBI	ATTAAT	2 cut(s)	219, 252
Psp5II	RGGWCCY	1 cut(s)	31
PspFI	CCCAGC	1 cut(s)	374
PspN4I	GGNNCC	2 cut(s)	461, 681
PspPI	GGNCC	2 cut(s)	31, 459
PspPPI	RGGWCCY	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	547
PvuII	CAGCTG	2 cut(s)	743, 959
RsaI	GTAC	1 cut(s)	200
RsaNI	GTAC	1 cut(s)	199
SatI	GCNGC	3 cut(s)	543, 859, 957
Sau3AI	GATC	3 cut(s)	385, 606, 1117
Sau96I	GGNCC	2 cut(s)	31, 459
SchI	GAGTC	2 cut(s)	832, 1039
SfaNI	GCATC	3 cut(s)	736, 1021, 1043
SfcI	CTRYAG	1 cut(s)	543
SinI	GGWCC	1 cut(s)	31
SmlI	CTYRAG	2 cut(s)	134, 983
SmoI	CTYRAG	2 cut(s)	134, 983
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	8 cut(s)	113, 216, 435, 447, 476, 601, 631, 1062
SsiI	CCGC	2 cut(s)	169, 178
SspMI	CTAG	4 cut(s)	486, 684, 1148, 1182
StyI	CCWWGG	1 cut(s)	523
TaaI	ACNGT	2 cut(s)	347, 767
TaiI	ACGT	1 cut(s)	1176
TaqI	TCGA	1 cut(s)	388
TasI	AATT	8 cut(s)	113, 216, 435, 447, 476, 601, 631, 1062
TfiI	GAWTC	5 cut(s)	584, 638, 695, 794, 1123
TscAI	CASTG	1 cut(s)	1117
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	3 cut(s)	542, 858, 956
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	6 cut(s)	28, 32, 122, 429, 750, 881
TspGWI	ACGGA	1 cut(s)	599
TspRI	CASTG	1 cut(s)	1117
VpaK11BI	GGWCC	1 cut(s)	31
VspI	ATTAAT	2 cut(s)	219, 252
XapI	RAATTY	1 cut(s)	631
XbaI	TCTAGA	2 cut(s)	1147, 1181
XceI	RCATGY	2 cut(s)	620, 788
XspI	CTAG	4 cut(s)	486, 684, 1148, 1182
ZraI	GACGTC	1 cut(s)	1174
Zsp2I	ATGCAT	2 cut(s)	1036, 1057

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.