Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

35376488 .. 35379148

Gene Structure 2661 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2241 bp

ATGCCATCAATGGCTTACATTTCTCTCTCCAAACCCTCCCAATGGCGACCCCGCCCCTCAAACCCCCACTCCCACTCCCTCACCCTCCTCCGCCTCTTCTGCTCCACCACCGAATCCCCGACCCCCCAACCCGACCCGCAAAATGGATCCGCCGCCGCCCCAAGACCCAGGCAGCCGCGTCGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGCTGCAGAACTCCATCCGCGATTTGGTACCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATAATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGCAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAACTGGGCGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTCGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGATTGGAGACTGCAAAGCGGTTTTTTGAGGACATGAAGAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTTTCAAGAGATGAAGTCTTTTGGTATCAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATATTGTCAGTGTAAGTCTGGAGATTTGGATGCGGCTGCCGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTATGAGGCCCCAGACTACTATGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGAATCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAGCCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCAGTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCGCTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGACAGCCTCTTATCTCTTCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGCATCAGGAAAGACTCTAAATGCGTACTCAATTTTGTGTAAAATAATGGACAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAATGATAAAGGGAGGGGAGGAGAAAGCCAGTCGAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGATTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

746

Amino Acids

84.44

Weight (kDa)

8.73

Isoelectric Point (pI)

40.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	203 - 246	1.2e-06	PPR repeat family
PPR_3	PF13812	225 - 281	5.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	238 - 281	2.4e-14	PPR repeat family
PPR_long	PF17177	252 - 348	4.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	258 - 317	8.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	265 - 296	4.3e-10	PPR repeat
PPR_2	PF13041	269 - 317	3.8e-16	PPR repeat family
PPR	PF01535	272 - 302	2.2e-07	PPR repeat
PPR_3	PF13812	293 - 348	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	300 - 333	3.3e-09	PPR repeat
PPR_2	PF13041	304 - 353	1e-17	PPR repeat family
PPR	PF01535	307 - 337	4.6e-08	PPR repeat
PPR_long	PF17177	322 - 441	5.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	327 - 374	3.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	336 - 368	2.4e-07	PPR repeat
PPR_2	PF13041	488 - 532	6.9e-07	PPR repeat family
TPR_24	PF23276	499 - 615	1.5e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	717, 920
AatII	GACGTC	1 cut(s)	2151
Acc65I	GGTACC	1 cut(s)	277
AccB1I	GGYRCC	1 cut(s)	277
AccBSI	CCGCTC	1 cut(s)	595
AccII	CGCG	3 cut(s)	178, 270, 1740
AccIII	TCCGGA	1 cut(s)	186
AclWI	GGATC	3 cut(s)	141, 154, 1480
AcsI	RAATTY	4 cut(s)	284, 1510, 1883, 1979
AcuI	CTGAAG	2 cut(s)	1417, 1443
AcyI	GRCGYC	1 cut(s)	2148
AfaI	GTAC	3 cut(s)	279, 668, 2042
AfeI	AGCGCT	1 cut(s)	1839
AfiI	CCNNNNNNNGG	5 cut(s)	42, 143, 193, 274, 479
AjnI	CCWGG	4 cut(s)	167, 239, 371, 1045
AloI	GAACNNNNNNTCC	2 cut(s)	959, 991
Alw21I	GWGCWC	2 cut(s)	1200, 1879
Alw26I	GTCTC	3 cut(s)	389, 605, 752
Alw44I	GTGCAC	1 cut(s)	1875
AlwI	GGATC	3 cut(s)	141, 154, 1480
AlwNI	CAGNNNCTG	1 cut(s)	1235
Ama87I	CYCGRG	2 cut(s)	203, 1958
Aor13HI	TCCGGA	1 cut(s)	186
Aor51HI	AGCGCT	1 cut(s)	1839
AoxI	GGCC	7 cut(s)	237, 424, 534, 867, 1048, 1272, 1337
ApaLI	GTGCAC	1 cut(s)	1875
ApeKI	GCWGC	5 cut(s)	172, 253, 1187, 1216, 1931
ApoI	RAATTY	4 cut(s)	284, 1510, 1883, 1979
ArsI	GACNNNNNNTTYG	2 cut(s)	2061, 2093
AseI	ATTAAT	1 cut(s)	834
Asp718I	GGTACC	1 cut(s)	277
AspLEI	GCGC	1 cut(s)	1840
AspS9I	GGNCC	5 cut(s)	184, 237, 424, 499, 1338
AsuC2I	CCSGG	4 cut(s)	194, 250, 451, 1276
AsuHPI	GGTGA	4 cut(s)	73, 808, 1018, 1625
AsuII	TTCGAA	1 cut(s)	434
AvaI	CYCGRG	2 cut(s)	203, 1958
AvaII	GGWCC	2 cut(s)	184, 499
BaeGI	GKGCMC	1 cut(s)	1879
BamHI	GGATCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	277
BanII	GRGCYC	1 cut(s)	194
Bbv12I	GWGCWC	2 cut(s)	1200, 1879
BbvCI	CCTCAGC	1 cut(s)	687
BbvI	GCAGC	5 cut(s)	184, 240, 1174, 1203, 1943
BceAI	ACGGC	1 cut(s)	1746
BcgI	CGANNNNNNTGC	6 cut(s)	161, 195, 235, 269, 1024, 1058
BciT130I	CCWGG	4 cut(s)	169, 241, 373, 1047
BciVI	GTATCC	2 cut(s)	467, 1259
BcnI	CCSGG	4 cut(s)	194, 250, 451, 1276
BcoDI	GTCTC	3 cut(s)	389, 605, 752
BfaI	CTAG	5 cut(s)	464, 1365, 1563, 2123, 2157
BfmI	CTRYAG	2 cut(s)	217, 254
BfoI	RGCGCY	1 cut(s)	1841
BfuI	GTATCC	2 cut(s)	467, 1259
BglI	GCCNNNNNGGC	1 cut(s)	706
BglII	AGATCT	1 cut(s)	1797
Bme1390I	CCNGG	8 cut(s)	169, 194, 241, 250, 373, 451, 1047, 1276
Bme18I	GGWCC	2 cut(s)	184, 499
BmeT110I	CYCGRG	2 cut(s)	203, 1958
BmgT120I	GGNCC	5 cut(s)	184, 237, 424, 499, 1338
BmiI	GGNNCC	7 cut(s)	148, 185, 191, 279, 322, 1340, 1560
BmrFI	CCNGG	8 cut(s)	169, 194, 241, 250, 373, 451, 1047, 1276
BmrI	ACTGGG	1 cut(s)	593
BmsI	GCATC	6 cut(s)	1048, 1171, 1399, 1615, 1996, 2027
BmuI	ACTGGG	1 cut(s)	593
BpmI	CTGGAG	1 cut(s)	1191
Bpu10I	CCTNAGC	1 cut(s)	687
Bpu14I	TTCGAA	1 cut(s)	434
BpuEI	CTTGAG	3 cut(s)	587, 769, 1184
BpuMI	CCSGG	4 cut(s)	194, 250, 451, 1276
BsaHI	GRCGYC	1 cut(s)	2148
BsaI	GGTCTC	1 cut(s)	389
BsaJI	CCNNGG	7 cut(s)	167, 204, 1122, 1275, 1402, 1489, 1500
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 59, 83, 89
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 143, 193, 274, 479
Bse118I	RCCGGY	1 cut(s)	536
Bse1I	ACTGG	2 cut(s)	588, 2187
Bse3DI	GCAATG	3 cut(s)	494, 1212, 1926
BseAI	TCCGGA	1 cut(s)	186
BseBI	CCWGG	4 cut(s)	169, 241, 373, 1047
BseDI	CCNNGG	7 cut(s)	167, 204, 1122, 1275, 1402, 1489, 1500
BseGI	GGATG	7 cut(s)	264, 499, 868, 973, 1078, 1186, 2011
BseLI	CCNNNNNNNGG	5 cut(s)	42, 143, 193, 274, 479
BseMI	GCAATG	3 cut(s)	494, 1212, 1926
BseMII	CTCAG	2 cut(s)	678, 1094
BseNI	ACTGG	2 cut(s)	588, 2187
BseRI	GAGGAG	3 cut(s)	77, 810, 2192
BseSI	GKGCMC	1 cut(s)	1879
BseXI	GCAGC	5 cut(s)	184, 240, 1174, 1203, 1943
BsgI	GTGCAG	1 cut(s)	1202
Bsh1236I	CGCG	3 cut(s)	178, 270, 1740
BshFI	GGCC	7 cut(s)	239, 426, 536, 869, 1050, 1274, 1339
BshNI	GGYRCC	1 cut(s)	277
BsiHKAI	GWGCWC	2 cut(s)	1200, 1879
BsiHKCI	CYCGRG	2 cut(s)	203, 1958
BsiSI	CCGG	6 cut(s)	187, 194, 250, 451, 537, 1275
BslI	CCNNNNNNNGG	5 cut(s)	42, 143, 193, 274, 479
BsmAI	GTCTC	3 cut(s)	389, 605, 752
BsnI	GGCC	7 cut(s)	239, 426, 536, 869, 1050, 1274, 1339
Bso31I	GGTCTC	1 cut(s)	389
BsoBI	CYCGRG	2 cut(s)	203, 1958
Bsp119I	TTCGAA	1 cut(s)	434
Bsp1286I	GDGCHC	3 cut(s)	194, 1200, 1879
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
Bsp19I	CCATGG	1 cut(s)	1402
BspANI	GGCC	7 cut(s)	239, 426, 536, 869, 1050, 1274, 1339
BspCNI	CTCAG	2 cut(s)	679, 1093
BspEI	TCCGGA	1 cut(s)	186
BspFNI	CGCG	3 cut(s)	178, 270, 1740
BspLI	GGNNCC	7 cut(s)	148, 185, 191, 279, 322, 1340, 1560
BspMAI	CTGCAG	2 cut(s)	221, 258
BspPI	GGATC	3 cut(s)	141, 154, 1480
BspT104I	TTCGAA	1 cut(s)	434
BspT107I	GGYRCC	1 cut(s)	277
BspTNI	GGTCTC	1 cut(s)	389
BsrBI	CCGCTC	1 cut(s)	595
BsrDI	GCAATG	3 cut(s)	494, 1212, 1926
BsrFI	RCCGGY	1 cut(s)	536
BsrI	ACTGG	2 cut(s)	588, 2187
BssAI	RCCGGY	1 cut(s)	536
BssECI	CCNNGG	7 cut(s)	167, 204, 1122, 1275, 1402, 1489, 1500
BssMI	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
BssNI	GRCGYC	1 cut(s)	2148
BssT1I	CCWWGG	3 cut(s)	1122, 1402, 1500
Bst2UI	CCWGG	4 cut(s)	169, 241, 373, 1047
Bst4CI	ACNGT	1 cut(s)	1646
Bst6I	CTCTTC	8 cut(s)	101, 509, 656, 782, 1436, 1546, 1742, 1908
BstACI	GRCGYC	1 cut(s)	2148
BstAPI	GCANNNNNTGC	1 cut(s)	2222
BstBI	TTCGAA	1 cut(s)	434
BstC8I	GCNNGC	5 cut(s)	538, 1497, 1620, 1735, 2218
BstDEI	CTNAG	4 cut(s)	687, 1080, 1604, 2014
BstDSI	CCRYGG	2 cut(s)	1402, 1489
BstF5I	GGATG	7 cut(s)	264, 499, 868, 973, 1078, 1186, 2011
BstFNI	CGCG	3 cut(s)	178, 270, 1740
BstH2I	RGCGCY	1 cut(s)	1841
BstHHI	GCGC	1 cut(s)	1840
BstKTI	GATC	6 cut(s)	149, 1288, 1488, 1800, 1855, 2104
BstMAI	GTCTC	3 cut(s)	389, 605, 752
BstMBI	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
BstMWI	GCNNNNNNNGC	9 cut(s)	99, 236, 537, 643, 706, 1309, 1634, 2015, 2222
BstNI	CCWGG	4 cut(s)	169, 241, 373, 1047
BstNSI	RCATGY	3 cut(s)	1499, 1667, 2216
BstSCI	CCNGG	8 cut(s)	167, 192, 239, 248, 371, 449, 1045, 1274
BstSFI	CTRYAG	2 cut(s)	217, 254
BstSLI	GKGCMC	1 cut(s)	1879
BstUI	CGCG	3 cut(s)	178, 270, 1740
BstV1I	GCAGC	5 cut(s)	184, 240, 1174, 1203, 1943
BstX2I	RGATCY	2 cut(s)	146, 1797
BstXI	CCANNNNNNTGG	1 cut(s)	1801
BstYI	RGATCY	2 cut(s)	146, 1797
BsuI	GTATCC	2 cut(s)	467, 1259
BsuRI	GGCC	7 cut(s)	239, 426, 536, 869, 1050, 1274, 1339
BtgI	CCRYGG	2 cut(s)	1402, 1489
BtsCI	GGATG	7 cut(s)	264, 499, 868, 973, 1078, 1186, 2011
BtsIMutI	CAGTG	3 cut(s)	1166, 2079, 2094
Cac8I	GCNNGC	5 cut(s)	538, 1497, 1620, 1735, 2218
CaiI	CAGNNNCTG	1 cut(s)	1235
CfoI	GCGC	1 cut(s)	1840
Cfr10I	RCCGGY	1 cut(s)	536
Cfr13I	GGNCC	5 cut(s)	184, 237, 424, 499, 1338
CseI	GACGC	1 cut(s)	167
Csp6I	GTAC	3 cut(s)	278, 667, 2041
CviQI	GTAC	3 cut(s)	278, 667, 2041
DdeI	CTNAG	4 cut(s)	687, 1080, 1604, 2014
DpnI	GATC	6 cut(s)	148, 1287, 1487, 1799, 1854, 2103
DpnII	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
DraI	TTTAAA	1 cut(s)	1536
Eam1104I	CTCTTC	8 cut(s)	101, 509, 656, 782, 1436, 1546, 1742, 1908
EarI	CTCTTC	8 cut(s)	101, 509, 656, 782, 1436, 1546, 1742, 1908
EciI	GGCGGA	2 cut(s)	80, 139
Eco130I	CCWWGG	3 cut(s)	1122, 1402, 1500
Eco147I	AGGCCT	1 cut(s)	1050
Eco24I	GRGCYC	1 cut(s)	194
Eco31I	GGTCTC	1 cut(s)	389
Eco47I	GGWCC	2 cut(s)	184, 499
Eco47III	AGCGCT	1 cut(s)	1839
Eco57I	CTGAAG	2 cut(s)	1417, 1443
Eco88I	CYCGRG	2 cut(s)	203, 1958
EcoO109I	RGGNCCY	2 cut(s)	499, 1338
EcoRI	GAATTC	1 cut(s)	284
EcoRII	CCWGG	4 cut(s)	167, 239, 371, 1045
EcoT14I	CCWWGG	3 cut(s)	1122, 1402, 1500
EcoT38I	GRGCYC	1 cut(s)	194
ErhI	CCWWGG	3 cut(s)	1122, 1402, 1500
FalI	AAGNNNNNCTT	2 cut(s)	653, 685
FauI	CCCGC	2 cut(s)	59, 144
FauNDI	CATATG	1 cut(s)	678
FokI	GGATG	7 cut(s)	251, 506, 875, 980, 1085, 1193, 2018
FriOI	GRGCYC	1 cut(s)	194
FspBI	CTAG	5 cut(s)	464, 1365, 1563, 2123, 2157
GlaI	GCGC	1 cut(s)	1839
GsuI	CTGGAG	1 cut(s)	1191
HaeII	RGCGCY	1 cut(s)	1841
HaeIII	GGCC	7 cut(s)	239, 426, 536, 869, 1050, 1274, 1339
HapII	CCGG	6 cut(s)	187, 194, 250, 451, 537, 1275
HgaI	GACGC	1 cut(s)	167
HhaI	GCGC	1 cut(s)	1840
Hin1I	GRCGYC	1 cut(s)	2148
Hin6I	GCGC	1 cut(s)	1838
HinP1I	GCGC	1 cut(s)	1838
HindIII	AAGCTT	1 cut(s)	560
HpaII	CCGG	6 cut(s)	187, 194, 250, 451, 537, 1275
HphI	GGTGA	4 cut(s)	73, 808, 1018, 1625
Hpy166II	GTNNAC	2 cut(s)	1297, 1877
Hpy188I	TCNGA	9 cut(s)	334, 356, 573, 1083, 1227, 1485, 1516, 1820, 2106
Hpy8I	GTNNAC	2 cut(s)	1297, 1877
Hpy99I	CGWCG	1 cut(s)	183
HpyAV	CCTTC	6 cut(s)	323, 472, 571, 886, 1483, 1756
HpyCH4III	ACNGT	1 cut(s)	1646
HpyCH4IV	ACGT	1 cut(s)	2148
HpyF10VI	GCNNNNNNNGC	9 cut(s)	99, 236, 537, 643, 706, 1309, 1634, 2015, 2222
HpyF3I	CTNAG	4 cut(s)	687, 1080, 1604, 2014
HpySE526I	ACGT	1 cut(s)	2148
Hsp92I	GRCGYC	1 cut(s)	2148
HspAI	GCGC	1 cut(s)	1838
Kpn2I	TCCGGA	1 cut(s)	186
KpnI	GGTACC	1 cut(s)	281
KroI	GCCGGC	1 cut(s)	536
KroNI	GCCGGC	1 cut(s)	538
Kzo9I	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
LmnI	GCTCC	5 cut(s)	107, 189, 320, 592, 1123
Lsp1109I	GCAGC	5 cut(s)	184, 240, 1174, 1203, 1943
LweI	GCATC	6 cut(s)	1048, 1171, 1399, 1615, 1996, 2027
MaeI	CTAG	5 cut(s)	464, 1365, 1563, 2123, 2157
MaeII	ACGT	1 cut(s)	2148
MaeIII	GTNAC	4 cut(s)	814, 1024, 2077, 2129
MalI	GATC	6 cut(s)	148, 1287, 1487, 1799, 1854, 2103
MbiI	CCGCTC	1 cut(s)	595
MboI	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
MflI	RGATCY	2 cut(s)	146, 1797
MhlI	GDGCHC	3 cut(s)	194, 1200, 1879
MlyI	GAGTC	5 cut(s)	560, 607, 697, 1711, 2023
MmeI	TCCRAC	3 cut(s)	357, 1250, 1983
MroI	TCCGGA	1 cut(s)	186
MroNI	GCCGGC	1 cut(s)	536
MseI	TTAA	8 cut(s)	672, 834, 852, 939, 1535, 1593, 1938, 2109
MspA1I	CMGCKG	2 cut(s)	1622, 1934
MspI	CCGG	6 cut(s)	187, 194, 250, 451, 537, 1275
MspR9I	CCNGG	8 cut(s)	169, 194, 241, 250, 373, 451, 1047, 1276
MvaI	CCWGG	4 cut(s)	169, 241, 373, 1047
MvnI	CGCG	3 cut(s)	178, 270, 1740
MwoI	GCNNNNNNNGC	9 cut(s)	99, 236, 537, 643, 706, 1309, 1634, 2015, 2222
NaeI	GCCGGC	1 cut(s)	538
NciI	CCSGG	4 cut(s)	194, 250, 451, 1276
NcoI	CCATGG	1 cut(s)	1402
NdeI	CATATG	1 cut(s)	678
NdeII	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
NgoMIV	GCCGGC	1 cut(s)	536
NlaIV	GGNNCC	7 cut(s)	148, 185, 191, 279, 322, 1340, 1560
NmeAIII	GCCGAG	3 cut(s)	452, 685, 895
NmuCI	GTSAC	3 cut(s)	814, 1024, 2077
NspI	RCATGY	3 cut(s)	1499, 1667, 2216
NspV	TTCGAA	1 cut(s)	434
PaeI	GCATGC	1 cut(s)	1499
PaeR7I	CTCGAG	1 cut(s)	1958
PceI	AGGCCT	1 cut(s)	1050
PdiI	GCCGGC	1 cut(s)	538
PfeI	GAWTC	7 cut(s)	113, 232, 418, 1463, 1517, 1574, 1673
PleI	GAGTC	5 cut(s)	559, 606, 697, 1710, 2023
PpsI	GAGTC	5 cut(s)	559, 606, 697, 1710, 2023
PpuMI	RGGWCCY	1 cut(s)	499
PshBI	ATTAAT	1 cut(s)	834
PsiI	TTATAA	2 cut(s)	717, 920
Psp5II	RGGWCCY	1 cut(s)	499
Psp6I	CCWGG	4 cut(s)	167, 239, 371, 1045
PspGI	CCWGG	4 cut(s)	167, 239, 371, 1045
PspN4I	GGNNCC	7 cut(s)	148, 185, 191, 279, 322, 1340, 1560
PspPI	GGNCC	5 cut(s)	184, 237, 424, 499, 1338
PspPPI	RGGWCCY	1 cut(s)	499
PstI	CTGCAG	2 cut(s)	221, 258
PstNI	CAGNNNCTG	1 cut(s)	1235
PsuI	RGATCY	2 cut(s)	146, 1797
PvuII	CAGCTG	2 cut(s)	1622, 1934
RsaI	GTAC	3 cut(s)	279, 668, 2042
RsaNI	GTAC	3 cut(s)	278, 667, 2041
SaqAI	TTAA	8 cut(s)	672, 834, 852, 939, 1535, 1593, 1938, 2109
Sau3AI	GATC	6 cut(s)	146, 1285, 1485, 1797, 1852, 2101
Sau96I	GGNCC	5 cut(s)	184, 237, 424, 499, 1338
SchI	GAGTC	5 cut(s)	560, 607, 697, 1711, 2023
ScrFI	CCNGG	8 cut(s)	169, 194, 241, 250, 373, 451, 1047, 1276
SduI	GDGCHC	3 cut(s)	194, 1200, 1879
SfaNI	GCATC	6 cut(s)	1048, 1171, 1399, 1615, 1996, 2027
SfcI	CTRYAG	2 cut(s)	217, 254
Sfr274I	CTCGAG	1 cut(s)	1958
SfuI	TTCGAA	1 cut(s)	434
SinI	GGWCC	2 cut(s)	184, 499
SlaI	CTCGAG	1 cut(s)	1958
SmlI	CTYRAG	4 cut(s)	602, 748, 1199, 1958
SmoI	CTYRAG	4 cut(s)	602, 748, 1199, 1958
SphI	GCATGC	1 cut(s)	1499
SseBI	AGGCCT	1 cut(s)	1050
SspI	AATATT	1 cut(s)	721
SspMI	CTAG	5 cut(s)	464, 1365, 1563, 2123, 2157
StuI	AGGCCT	1 cut(s)	1050
StyD4I	CCNGG	8 cut(s)	167, 192, 239, 248, 371, 449, 1045, 1274
StyI	CCWWGG	3 cut(s)	1122, 1402, 1500
TaaI	ACNGT	1 cut(s)	1646
TaiI	ACGT	1 cut(s)	2151
TaqI	TCGA	7 cut(s)	288, 363, 434, 1034, 1288, 1959, 2191
TaqII	GACCGA	1 cut(s)	544
TauI	GCSGC	5 cut(s)	155, 158, 178, 1187, 1740
TfiI	GAWTC	7 cut(s)	113, 232, 418, 1463, 1517, 1574, 1673
Tru1I	TTAA	8 cut(s)	672, 834, 852, 939, 1535, 1593, 1938, 2109
Tru9I	TTAA	8 cut(s)	672, 834, 852, 939, 1535, 1593, 1938, 2109
TscAI	CASTG	3 cut(s)	1166, 2086, 2101
TseFI	GTSAC	3 cut(s)	814, 1024, 2077
TseI	GCWGC	5 cut(s)	172, 253, 1187, 1216, 1931
Tsp45I	GTSAC	3 cut(s)	814, 1024, 2077
TspDTI	ATGAA	8 cut(s)	496, 500, 590, 800, 1010, 1089, 1460, 1760
TspGWI	ACGGA	3 cut(s)	333, 1478, 1861
TspRI	CASTG	3 cut(s)	1166, 2086, 2101
VneI	GTGCAC	1 cut(s)	1875
VpaK11BI	GGWCC	2 cut(s)	184, 499
VspI	ATTAAT	1 cut(s)	834
XapI	RAATTY	4 cut(s)	284, 1510, 1883, 1979
XbaI	TCTAGA	2 cut(s)	2122, 2156
XceI	RCATGY	3 cut(s)	1499, 1667, 2216
XcmI	CCANNNNNNNNNTGG	1 cut(s)	271
XhoI	CTCGAG	1 cut(s)	1958
XspI	CTAG	5 cut(s)	464, 1365, 1563, 2123, 2157
ZraI	GACGTC	1 cut(s)	2149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.