Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

32507395 .. 32509847

Gene Structure 2453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013509

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2253 bp

ATGCCATCAATGGCTTACATTTCTCTCTCTAAACCCTCCCAATGGCGACCCCGCCCCTCAAACCCCCACTCCCTCACCCTCCTCCGCCTCTTCTGCTCCTCCACCGAAACCCCAACCCCCCAACCCGACCCGCAAAATGGAGCCTCCGCCGCCGCCGCCGCCCCGACGGCCCCAAGACCGAGGCAGCCGCGTAGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGTTGCAGAACTCCATCCGCGATTTGGTACCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATTATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTATTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGCAAGGCTGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAACTGGGTGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTAGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGATTGGAGACTGCAAAGCGGTTTTTTGAGGACATGAAAAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTTTCAAGAGATGAAGTCTATTGGTATTAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATATTGTCAGTGTAAGTCTGGAGATTTGGATGCGGCTGCCGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGCGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTGTGAGGCCCCAGACTACTATGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCGCTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCGCTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGATAGCCTCTTATCTCTTCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGTATCAGGAAAGACTCTAAATGCGTATTCAATTTTGTGTAAAATAATGGAGAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTGTCTAGAATGATAAAGGGAGGGAAGGAGAAAGCCAGTCGAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGACTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

751

Amino Acids

84.64

Weight (kDa)

8.85

Isoelectric Point (pI)

39.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	207 - 250	1.2e-06	PPR repeat family
PPR_2	PF13041	242 - 285	2.4e-14	PPR repeat family
PPR_3	PF13812	262 - 321	8.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	269 - 300	4.3e-10	PPR repeat
PPR_2	PF13041	273 - 321	3.8e-16	PPR repeat family
PPR	PF01535	276 - 306	2.2e-07	PPR repeat
PPR_3	PF13812	297 - 352	6.7e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	304 - 337	3.3e-09	PPR repeat
PPR_2	PF13041	308 - 357	2.5e-17	PPR repeat family
PPR	PF01535	311 - 341	9.1e-08	PPR repeat
PPR_long	PF17177	326 - 454	1.1e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	331 - 378	2.8e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	340 - 372	3.6e-07	PPR repeat
PPR_2	PF13041	492 - 537	1.7e-07	PPR repeat family
TPR_24	PF23276	503 - 619	3e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	729, 932
AatII	GACGTC	1 cut(s)	2163
Acc65I	GGTACC	1 cut(s)	289
AccB1I	GGYRCC	1 cut(s)	289
AccBSI	CCGCTC	1 cut(s)	607
AccII	CGCG	3 cut(s)	190, 282, 1752
AccIII	TCCGGA	1 cut(s)	198
AclWI	GGATC	1 cut(s)	1492
AcsI	RAATTY	4 cut(s)	296, 1522, 1895, 1991
AcuI	CTGAAG	2 cut(s)	1429, 1455
AcyI	GRCGYC	1 cut(s)	2160
AfaI	GTAC	2 cut(s)	291, 680
AfeI	AGCGCT	1 cut(s)	1851
AfiI	CCNNNNNNNGG	5 cut(s)	42, 137, 205, 286, 491
AhdI	GACNNNNNGTC	1 cut(s)	2164
AjnI	CCWGG	3 cut(s)	251, 383, 1057
AloI	GAACNNNNNNTCC	2 cut(s)	971, 1003
Alw21I	GWGCWC	2 cut(s)	1212, 1891
Alw26I	GTCTC	3 cut(s)	401, 617, 764
Alw44I	GTGCAC	1 cut(s)	1887
AlwI	GGATC	1 cut(s)	1492
AlwNI	CAGNNNCTG	1 cut(s)	1247
Ama87I	CYCGRG	2 cut(s)	215, 1970
Aor13HI	TCCGGA	1 cut(s)	198
Aor51HI	AGCGCT	1 cut(s)	1851
AoxI	GGCC	7 cut(s)	168, 249, 436, 879, 1060, 1284, 1349
ApaLI	GTGCAC	1 cut(s)	1887
ApeKI	GCWGC	4 cut(s)	184, 1199, 1228, 1943
ApoI	RAATTY	4 cut(s)	296, 1522, 1895, 1991
AseI	ATTAAT	1 cut(s)	846
Asp718I	GGTACC	1 cut(s)	289
AspLEI	GCGC	1 cut(s)	1852
AspS9I	GGNCC	6 cut(s)	169, 196, 249, 436, 511, 1350
AsuC2I	CCSGG	4 cut(s)	206, 262, 463, 1288
AsuHPI	GGTGA	4 cut(s)	67, 820, 1030, 1637
AsuII	TTCGAA	1 cut(s)	446
AvaI	CYCGRG	2 cut(s)	215, 1970
AvaII	GGWCC	2 cut(s)	196, 511
BaeGI	GKGCMC	1 cut(s)	1891
BanI	GGYRCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	206
Bbv12I	GWGCWC	2 cut(s)	1212, 1891
BbvCI	CCTCAGC	1 cut(s)	699
BbvI	GCAGC	4 cut(s)	196, 1186, 1215, 1955
BceAI	ACGGC	2 cut(s)	183, 1758
BcgI	CGANNNNNNTGC	4 cut(s)	247, 281, 1036, 1070
BciT130I	CCWGG	3 cut(s)	253, 385, 1059
BciVI	GTATCC	2 cut(s)	479, 1271
BcnI	CCSGG	4 cut(s)	206, 262, 463, 1288
BcoDI	GTCTC	3 cut(s)	401, 617, 764
BfaI	CTAG	5 cut(s)	717, 1377, 1575, 2135, 2169
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	1853
BfuI	GTATCC	2 cut(s)	479, 1271
BglI	GCCNNNNNGGC	2 cut(s)	167, 718
BglII	AGATCT	1 cut(s)	1809
Bme1390I	CCNGG	7 cut(s)	206, 253, 262, 385, 463, 1059, 1288
Bme18I	GGWCC	2 cut(s)	196, 511
BmeRI	GACNNNNNGTC	1 cut(s)	2164
BmeT110I	CYCGRG	2 cut(s)	215, 1970
BmgT120I	GGNCC	6 cut(s)	169, 196, 249, 436, 511, 1350
BmiI	GGNNCC	8 cut(s)	142, 171, 197, 203, 291, 334, 1352, 1572
BmrFI	CCNGG	7 cut(s)	206, 253, 262, 385, 463, 1059, 1288
BmrI	ACTGGG	2 cut(s)	605, 2252
BmsI	GCATC	5 cut(s)	1060, 1183, 1411, 1627, 2008
BmuI	ACTGGG	2 cut(s)	605, 2252
BpmI	CTGGAG	1 cut(s)	1203
Bpu10I	CCTNAGC	1 cut(s)	699
Bpu14I	TTCGAA	1 cut(s)	446
BpuEI	CTTGAG	3 cut(s)	599, 781, 1196
BpuMI	CCSGG	4 cut(s)	206, 262, 463, 1288
BsaHI	GRCGYC	1 cut(s)	2160
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	7 cut(s)	179, 216, 1134, 1287, 1414, 1501, 1512
BsaWI	WCCGGW	1 cut(s)	198
BsaXI	ACNNNNNCTCC	2 cut(s)	53, 83
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 137, 205, 286, 491
Bse1I	ACTGG	3 cut(s)	600, 2199, 2247
Bse3DI	GCAATG	3 cut(s)	506, 1224, 1938
BseAI	TCCGGA	1 cut(s)	198
BseBI	CCWGG	3 cut(s)	253, 385, 1059
BseDI	CCNNGG	7 cut(s)	179, 216, 1134, 1287, 1414, 1501, 1512
BseGI	GGATG	7 cut(s)	276, 511, 880, 985, 1090, 1198, 2023
BseLI	CCNNNNNNNGG	5 cut(s)	42, 137, 205, 286, 491
BseMI	GCAATG	3 cut(s)	506, 1224, 1938
BseMII	CTCAG	2 cut(s)	690, 1106
BseNI	ACTGG	3 cut(s)	600, 2199, 2247
BseRI	GAGGAG	3 cut(s)	71, 88, 822
BseSI	GKGCMC	1 cut(s)	1891
BseXI	GCAGC	4 cut(s)	196, 1186, 1215, 1955
BsgI	GTGCAG	1 cut(s)	1214
Bsh1236I	CGCG	3 cut(s)	190, 282, 1752
BshFI	GGCC	7 cut(s)	170, 251, 438, 881, 1062, 1286, 1351
BshNI	GGYRCC	1 cut(s)	289
BsiHKAI	GWGCWC	2 cut(s)	1212, 1891
BsiHKCI	CYCGRG	2 cut(s)	215, 1970
BsiSI	CCGG	5 cut(s)	199, 206, 262, 463, 1287
BslI	CCNNNNNNNGG	5 cut(s)	42, 137, 205, 286, 491
BsmAI	GTCTC	3 cut(s)	401, 617, 764
BsnI	GGCC	7 cut(s)	170, 251, 438, 881, 1062, 1286, 1351
Bso31I	GGTCTC	1 cut(s)	401
BsoBI	CYCGRG	2 cut(s)	215, 1970
Bsp119I	TTCGAA	1 cut(s)	446
Bsp1286I	GDGCHC	3 cut(s)	206, 1212, 1891
Bsp13I	TCCGGA	1 cut(s)	198
Bsp143I	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
Bsp19I	CCATGG	1 cut(s)	1414
BspANI	GGCC	7 cut(s)	170, 251, 438, 881, 1062, 1286, 1351
BspCNI	CTCAG	2 cut(s)	691, 1105
BspEI	TCCGGA	1 cut(s)	198
BspFNI	CGCG	3 cut(s)	190, 282, 1752
BspLI	GGNNCC	8 cut(s)	142, 171, 197, 203, 291, 334, 1352, 1572
BspMAI	CTGCAG	1 cut(s)	233
BspPI	GGATC	1 cut(s)	1492
BspT104I	TTCGAA	1 cut(s)	446
BspT107I	GGYRCC	1 cut(s)	289
BspTNI	GGTCTC	1 cut(s)	401
BsrBI	CCGCTC	1 cut(s)	607
BsrDI	GCAATG	3 cut(s)	506, 1224, 1938
BsrI	ACTGG	3 cut(s)	600, 2199, 2247
BssECI	CCNNGG	7 cut(s)	179, 216, 1134, 1287, 1414, 1501, 1512
BssMI	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
BssNI	GRCGYC	1 cut(s)	2160
BssT1I	CCWWGG	3 cut(s)	1134, 1414, 1512
Bst2UI	CCWGG	3 cut(s)	253, 385, 1059
Bst4CI	ACNGT	1 cut(s)	1658
Bst6I	CTCTTC	7 cut(s)	95, 521, 668, 1448, 1558, 1754, 1920
BstACI	GRCGYC	1 cut(s)	2160
BstAPI	GCANNNNNTGC	1 cut(s)	2234
BstBI	TTCGAA	1 cut(s)	446
BstC8I	GCNNGC	4 cut(s)	550, 1509, 1747, 2230
BstDEI	CTNAG	4 cut(s)	699, 1092, 1616, 2026
BstDSI	CCRYGG	2 cut(s)	1414, 1501
BstF5I	GGATG	7 cut(s)	276, 511, 880, 985, 1090, 1198, 2023
BstFNI	CGCG	3 cut(s)	190, 282, 1752
BstH2I	RGCGCY	1 cut(s)	1853
BstHHI	GCGC	1 cut(s)	1852
BstKTI	GATC	5 cut(s)	1300, 1500, 1812, 1867, 2116
BstMAI	GTCTC	3 cut(s)	401, 617, 764
BstMBI	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
BstNI	CCWGG	3 cut(s)	253, 385, 1059
BstNSI	RCATGY	3 cut(s)	1511, 1679, 2228
BstSCI	CCNGG	7 cut(s)	204, 251, 260, 383, 461, 1057, 1286
BstSFI	CTRYAG	1 cut(s)	229
BstSLI	GKGCMC	1 cut(s)	1891
BstUI	CGCG	3 cut(s)	190, 282, 1752
BstV1I	GCAGC	4 cut(s)	196, 1186, 1215, 1955
BstX2I	RGATCY	1 cut(s)	1809
BstXI	CCANNNNNNTGG	1 cut(s)	1813
BstYI	RGATCY	1 cut(s)	1809
BsuI	GTATCC	2 cut(s)	479, 1271
BsuRI	GGCC	7 cut(s)	170, 251, 438, 881, 1062, 1286, 1351
BtgI	CCRYGG	2 cut(s)	1414, 1501
BtgZI	GCGATG	1 cut(s)	1674
BtsCI	GGATG	7 cut(s)	276, 511, 880, 985, 1090, 1198, 2023
BtsIMutI	CAGTG	3 cut(s)	1178, 2091, 2106
Cac8I	GCNNGC	4 cut(s)	550, 1509, 1747, 2230
CaiI	CAGNNNCTG	1 cut(s)	1247
CfoI	GCGC	1 cut(s)	1852
Cfr13I	GGNCC	6 cut(s)	169, 196, 249, 436, 511, 1350
Csp6I	GTAC	2 cut(s)	290, 679
CviQI	GTAC	2 cut(s)	290, 679
DdeI	CTNAG	4 cut(s)	699, 1092, 1616, 2026
DpnI	GATC	5 cut(s)	1299, 1499, 1811, 1866, 2115
DpnII	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
DraI	TTTAAA	1 cut(s)	1548
DriI	GACNNNNNGTC	1 cut(s)	2164
Eam1104I	CTCTTC	7 cut(s)	95, 521, 668, 1448, 1558, 1754, 1920
Eam1105I	GACNNNNNGTC	1 cut(s)	2164
EarI	CTCTTC	7 cut(s)	95, 521, 668, 1448, 1558, 1754, 1920
EciI	GGCGGA	2 cut(s)	74, 136
Eco130I	CCWWGG	3 cut(s)	1134, 1414, 1512
Eco147I	AGGCCT	1 cut(s)	1062
Eco24I	GRGCYC	1 cut(s)	206
Eco31I	GGTCTC	1 cut(s)	401
Eco47I	GGWCC	2 cut(s)	196, 511
Eco47III	AGCGCT	1 cut(s)	1851
Eco57I	CTGAAG	2 cut(s)	1429, 1455
Eco88I	CYCGRG	2 cut(s)	215, 1970
EcoO109I	RGGNCCY	2 cut(s)	511, 1350
EcoRI	GAATTC	1 cut(s)	296
EcoRII	CCWGG	3 cut(s)	251, 383, 1057
EcoT14I	CCWWGG	3 cut(s)	1134, 1414, 1512
EcoT38I	GRGCYC	1 cut(s)	206
ErhI	CCWWGG	3 cut(s)	1134, 1414, 1512
FalI	AAGNNNNNCTT	2 cut(s)	665, 697
FauI	CCCGC	2 cut(s)	59, 138
FauNDI	CATATG	1 cut(s)	690
FokI	GGATG	7 cut(s)	263, 518, 887, 992, 1097, 1205, 2030
FriOI	GRGCYC	1 cut(s)	206
FspBI	CTAG	5 cut(s)	717, 1377, 1575, 2135, 2169
GlaI	GCGC	1 cut(s)	1851
GsuI	CTGGAG	1 cut(s)	1203
HaeII	RGCGCY	1 cut(s)	1853
HaeIII	GGCC	7 cut(s)	170, 251, 438, 881, 1062, 1286, 1351
HapII	CCGG	5 cut(s)	199, 206, 262, 463, 1287
HhaI	GCGC	1 cut(s)	1852
Hin1I	GRCGYC	1 cut(s)	2160
Hin6I	GCGC	1 cut(s)	1850
HinP1I	GCGC	1 cut(s)	1850
HindIII	AAGCTT	1 cut(s)	572
HpaII	CCGG	5 cut(s)	199, 206, 262, 463, 1287
HphI	GGTGA	4 cut(s)	67, 820, 1030, 1637
Hpy166II	GTNNAC	3 cut(s)	1309, 1628, 1889
Hpy188I	TCNGA	9 cut(s)	346, 368, 585, 1095, 1239, 1497, 1528, 1832, 2118
Hpy8I	GTNNAC	3 cut(s)	1309, 1628, 1889
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	7 cut(s)	335, 484, 583, 898, 1495, 1768, 2182
HpyCH4III	ACNGT	1 cut(s)	1658
HpyCH4IV	ACGT	1 cut(s)	2160
HpyF3I	CTNAG	4 cut(s)	699, 1092, 1616, 2026
HpySE526I	ACGT	1 cut(s)	2160
Hsp92I	GRCGYC	1 cut(s)	2160
HspAI	GCGC	1 cut(s)	1850
Kpn2I	TCCGGA	1 cut(s)	198
KpnI	GGTACC	1 cut(s)	293
Kzo9I	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
LmnI	GCTCC	6 cut(s)	101, 140, 201, 332, 604, 1135
Lsp1109I	GCAGC	4 cut(s)	196, 1186, 1215, 1955
LweI	GCATC	5 cut(s)	1060, 1183, 1411, 1627, 2008
MaeI	CTAG	5 cut(s)	717, 1377, 1575, 2135, 2169
MaeII	ACGT	1 cut(s)	2160
MaeIII	GTNAC	4 cut(s)	826, 1036, 2089, 2141
MalI	GATC	5 cut(s)	1299, 1499, 1811, 1866, 2115
MbiI	CCGCTC	1 cut(s)	607
MboI	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
MflI	RGATCY	1 cut(s)	1809
MhlI	GDGCHC	3 cut(s)	206, 1212, 1891
MlyI	GAGTC	4 cut(s)	572, 619, 1723, 2035
MmeI	TCCRAC	3 cut(s)	369, 1262, 1995
MroI	TCCGGA	1 cut(s)	198
MseI	TTAA	9 cut(s)	684, 846, 864, 951, 1023, 1547, 1605, 1950, 2121
MspA1I	CMGCKG	2 cut(s)	1634, 1946
MspI	CCGG	5 cut(s)	199, 206, 262, 463, 1287
MspR9I	CCNGG	7 cut(s)	206, 253, 262, 385, 463, 1059, 1288
MvaI	CCWGG	3 cut(s)	253, 385, 1059
MvnI	CGCG	3 cut(s)	190, 282, 1752
NciI	CCSGG	4 cut(s)	206, 262, 463, 1288
NcoI	CCATGG	1 cut(s)	1414
NdeI	CATATG	1 cut(s)	690
NdeII	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
NlaIV	GGNNCC	8 cut(s)	142, 171, 197, 203, 291, 334, 1352, 1572
NmeAIII	GCCGAG	2 cut(s)	464, 907
NmuCI	GTSAC	3 cut(s)	826, 1036, 2089
NspI	RCATGY	3 cut(s)	1511, 1679, 2228
NspV	TTCGAA	1 cut(s)	446
PaeI	GCATGC	1 cut(s)	1511
PaeR7I	CTCGAG	1 cut(s)	1970
PceI	AGGCCT	1 cut(s)	1062
PfeI	GAWTC	6 cut(s)	244, 430, 1475, 1529, 1586, 1685
PleI	GAGTC	4 cut(s)	571, 618, 1722, 2035
PpsI	GAGTC	4 cut(s)	571, 618, 1722, 2035
PpuMI	RGGWCCY	1 cut(s)	511
PshBI	ATTAAT	1 cut(s)	846
PsiI	TTATAA	2 cut(s)	729, 932
Psp5II	RGGWCCY	1 cut(s)	511
Psp6I	CCWGG	3 cut(s)	251, 383, 1057
PspGI	CCWGG	3 cut(s)	251, 383, 1057
PspN4I	GGNNCC	8 cut(s)	142, 171, 197, 203, 291, 334, 1352, 1572
PspPI	GGNCC	6 cut(s)	169, 196, 249, 436, 511, 1350
PspPPI	RGGWCCY	1 cut(s)	511
PstI	CTGCAG	1 cut(s)	233
PstNI	CAGNNNCTG	1 cut(s)	1247
PsuI	RGATCY	1 cut(s)	1809
PvuII	CAGCTG	2 cut(s)	1634, 1946
RsaI	GTAC	2 cut(s)	291, 680
RsaNI	GTAC	2 cut(s)	290, 679
SaqAI	TTAA	9 cut(s)	684, 846, 864, 951, 1023, 1547, 1605, 1950, 2121
Sau3AI	GATC	5 cut(s)	1297, 1497, 1809, 1864, 2113
Sau96I	GGNCC	6 cut(s)	169, 196, 249, 436, 511, 1350
SchI	GAGTC	4 cut(s)	572, 619, 1723, 2035
ScrFI	CCNGG	7 cut(s)	206, 253, 262, 385, 463, 1059, 1288
SduI	GDGCHC	3 cut(s)	206, 1212, 1891
SfaNI	GCATC	5 cut(s)	1060, 1183, 1411, 1627, 2008
SfcI	CTRYAG	1 cut(s)	229
Sfr274I	CTCGAG	1 cut(s)	1970
SfuI	TTCGAA	1 cut(s)	446
SinI	GGWCC	2 cut(s)	196, 511
SlaI	CTCGAG	1 cut(s)	1970
SmlI	CTYRAG	4 cut(s)	614, 760, 1211, 1970
SmoI	CTYRAG	4 cut(s)	614, 760, 1211, 1970
SphI	GCATGC	1 cut(s)	1511
SseBI	AGGCCT	1 cut(s)	1062
SspI	AATATT	1 cut(s)	733
SspMI	CTAG	5 cut(s)	717, 1377, 1575, 2135, 2169
StuI	AGGCCT	1 cut(s)	1062
StyD4I	CCNGG	7 cut(s)	204, 251, 260, 383, 461, 1057, 1286
StyI	CCWWGG	3 cut(s)	1134, 1414, 1512
TaaI	ACNGT	1 cut(s)	1658
TaiI	ACGT	1 cut(s)	2163
TaqI	TCGA	7 cut(s)	300, 375, 446, 1046, 1300, 1971, 2203
TaqII	GACCGA	2 cut(s)	193, 556
TauI	GCSGC	7 cut(s)	152, 155, 158, 161, 190, 1199, 1752
TfiI	GAWTC	6 cut(s)	244, 430, 1475, 1529, 1586, 1685
Tru1I	TTAA	9 cut(s)	684, 846, 864, 951, 1023, 1547, 1605, 1950, 2121
Tru9I	TTAA	9 cut(s)	684, 846, 864, 951, 1023, 1547, 1605, 1950, 2121
TscAI	CASTG	3 cut(s)	1178, 2098, 2113
TseFI	GTSAC	3 cut(s)	826, 1036, 2089
TseI	GCWGC	4 cut(s)	184, 1199, 1228, 1943
Tsp45I	GTSAC	3 cut(s)	826, 1036, 2089
TspDTI	ATGAA	8 cut(s)	508, 512, 602, 812, 1022, 1101, 1472, 1772
TspGWI	ACGGA	3 cut(s)	345, 1490, 1873
TspRI	CASTG	3 cut(s)	1178, 2098, 2113
VneI	GTGCAC	1 cut(s)	1887
VpaK11BI	GGWCC	2 cut(s)	196, 511
VspI	ATTAAT	1 cut(s)	846
XapI	RAATTY	4 cut(s)	296, 1522, 1895, 1991
XbaI	TCTAGA	2 cut(s)	2134, 2168
XceI	RCATGY	3 cut(s)	1511, 1679, 2228
XcmI	CCANNNNNNNNNTGG	1 cut(s)	283
XhoI	CTCGAG	1 cut(s)	1970
XspI	CTAG	5 cut(s)	717, 1377, 1575, 2135, 2169
ZraI	GACGTC	1 cut(s)	2161

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.