Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

30524291 .. 30525540

Gene Structure 1250 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0270600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGGAAGCTGGAGATCCTATAGAGGAAGATGATCTAACTATATCAGAGGCTTTGAAACTTAAGAAGAAGCTTAAAACTGTTGAAACTGGAAAATATACTGACAGTGCGAAGTTGTCAAGTCCCAATCAAATCTTTGCATCTTCATCTGCAGATGAAATTTCTATGAATATTATGAAGTCAAAAATACTGGAAAAAGAAGTTGTGTTGAGTAGTGAAGTGGTGACTTGGGGAAGTAAAGGTCATTGGAAACTGGACAAGGTAATCATGAGTCAGGAAAGAAGTCTAAGTAATGACATGGTGAGCATCGTTGGCAATAAATGTCCTAGCAGCACCTCTTCATCTGATAAACTGGAATGTGGTAGCAGCATGTCTTTATGTAAGAAACGGGAATGTGCTAGCAGCAGTTCATTATTTGTGAAACAAGAATGTACTAGCAGCGGCTCTTTATTTGTAAAACTGGAATGTGCTAGCATCAGCCCTTCAATTGCAGATGAACGTACTTTTGTTAATACTAAGAAGTCTGAAAGATTGGAGAAAGAGGTTCCATTCATTAAAGCTTTGATCTGGGGAGGTAAGGGTAAGAGGAAAATGAAAAATGTAATGAGAAGTAAGGCAAGAAGCAGCTCCTTATTCAAGAAACGGGAAGATGGCAGCAGCAGCACTTCATTTGAAAAACGAGTTTCAGAGCTTAAAGCTAAGGTTTACAGGCTGGAAAAGGTGGTTCAGGTGTTGAAAGAAAATACTTTTGGGAAGAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

252

Amino Acids

27.88

Weight (kDa)

9.4

Isoelectric Point (pI)

54.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	438
AclWI	GGATC	1 cut(s)	8
AcsI	RAATTY	1 cut(s)	156
AfaI	GTAC	2 cut(s)	430, 499
AflII	CTTAAG	1 cut(s)	59
AgsI	TTSAA	6 cut(s)	55, 83, 483, 634, 671, 733
AjuI	GAANNNNNNNTTGG	1 cut(s)	729
AluBI	AGCT	6 cut(s)	8, 70, 557, 624, 688, 695
AluI	AGCT	6 cut(s)	8, 70, 557, 624, 688, 695
AlwI	GGATC	1 cut(s)	8
ApeKI	GCWGC	8 cut(s)	327, 363, 399, 435, 621, 651, 654, 657
ApoI	RAATTY	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	232, 310
AsuNHI	GCTAGC	2 cut(s)	395, 467
BbvI	GCAGC	8 cut(s)	339, 375, 411, 447, 633, 663, 666, 669
BccI	CCATC	1 cut(s)	641
BfaI	CTAG	4 cut(s)	324, 396, 432, 468
BfmI	CTRYAG	2 cut(s)	18, 147
BfrI	CTTAAG	1 cut(s)	59
BisI	GCNGC	9 cut(s)	328, 364, 400, 436, 439, 622, 652, 655, 658
BlsI	GCNGC	9 cut(s)	329, 365, 401, 437, 440, 623, 653, 656, 659
BmiI	GGNNCC	1 cut(s)	543
BmsI	GCATC	3 cut(s)	146, 312, 480
BmtI	GCTAGC	2 cut(s)	399, 471
BpmI	CTGGAG	1 cut(s)	30
Bpu10I	CCTNAGC	1 cut(s)	696
Bse1I	ACTGG	5 cut(s)	91, 192, 255, 354, 462
BseNI	ACTGG	5 cut(s)	91, 192, 255, 354, 462
BseXI	GCAGC	8 cut(s)	339, 375, 411, 447, 633, 663, 666, 669
BslFI	GGGAC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	13, 31, 561
BspACI	CCGC	1 cut(s)	438
BspHI	TCATGA	1 cut(s)	264
BspLI	GGNNCC	1 cut(s)	543
BspMAI	CTGCAG	1 cut(s)	151
BspOI	GCTAGC	2 cut(s)	399, 471
BspPI	GGATC	1 cut(s)	8
BspTI	CTTAAG	1 cut(s)	59
BsrI	ACTGG	5 cut(s)	91, 192, 255, 354, 462
BssMI	GATC	3 cut(s)	13, 31, 561
Bst4CI	ACNGT	2 cut(s)	79, 104
Bst6I	CTCTTC	2 cut(s)	340, 746
BstAFI	CTTAAG	1 cut(s)	59
BstC8I	GCNNGC	2 cut(s)	397, 469
BstDEI	CTNAG	3 cut(s)	284, 513, 696
BstKTI	GATC	3 cut(s)	16, 34, 564
BstMBI	GATC	3 cut(s)	13, 31, 561
BstMWI	GCNNNNNNNGC	2 cut(s)	309, 657
BstNSI	RCATGY	1 cut(s)	370
BstSFI	CTRYAG	2 cut(s)	18, 147
BstV1I	GCAGC	8 cut(s)	339, 375, 411, 447, 633, 663, 666, 669
BstX2I	RGATCY	1 cut(s)	13
BstYI	RGATCY	1 cut(s)	13
BtsIMutI	CAGTG	1 cut(s)	109
Cac8I	GCNNGC	2 cut(s)	397, 469
CciI	TCATGA	1 cut(s)	264
Csp6I	GTAC	2 cut(s)	429, 498
CviAII	CATG	3 cut(s)	265, 295, 367
CviQI	GTAC	2 cut(s)	429, 498
DdeI	CTNAG	3 cut(s)	284, 513, 696
DpnI	GATC	3 cut(s)	15, 33, 563
DpnII	GATC	3 cut(s)	13, 31, 561
Eam1104I	CTCTTC	2 cut(s)	340, 746
EarI	CTCTTC	2 cut(s)	340, 746
FaeI	CATG	3 cut(s)	268, 298, 370
FaiI	YATR	9 cut(s)	20, 41, 96, 164, 173, 266, 296, 368, 376
FaqI	GGGAC	1 cut(s)	105
FatI	CATG	3 cut(s)	264, 294, 366
Fnu4HI	GCNGC	9 cut(s)	328, 364, 400, 436, 439, 622, 652, 655, 658
Fsp4HI	GCNGC	9 cut(s)	328, 364, 400, 436, 439, 622, 652, 655, 658
FspBI	CTAG	4 cut(s)	324, 396, 432, 468
GluI	GCNGC	9 cut(s)	328, 364, 400, 436, 439, 622, 652, 655, 658
GsuI	CTGGAG	1 cut(s)	30
Hin1II	CATG	3 cut(s)	268, 298, 370
HindIII	AAGCTT	2 cut(s)	68, 555
HinfI	GANTC	1 cut(s)	268
HphI	GGTGA	2 cut(s)	232, 310
Hpy166II	GTNNAC	1 cut(s)	703
Hpy188I	TCNGA	4 cut(s)	46, 343, 523, 685
Hpy188III	TCNNGA	3 cut(s)	265, 272, 634
Hpy8I	GTNNAC	1 cut(s)	703
HpyAV	CCTTC	1 cut(s)	489
HpyCH4III	ACNGT	2 cut(s)	79, 104
HpyCH4IV	ACGT	1 cut(s)	496
HpyCH4V	TGCA	3 cut(s)	137, 149, 488
HpyF10VI	GCNNNNNNNGC	2 cut(s)	309, 657
HpyF3I	CTNAG	3 cut(s)	284, 513, 696
HpySE526I	ACGT	1 cut(s)	496
Hsp92II	CATG	3 cut(s)	268, 298, 370
Kzo9I	GATC	3 cut(s)	13, 31, 561
LmnI	GCTCC	1 cut(s)	629
Lsp1109I	GCAGC	8 cut(s)	339, 375, 411, 447, 633, 663, 666, 669
LweI	GCATC	3 cut(s)	146, 312, 480
MaeI	CTAG	4 cut(s)	324, 396, 432, 468
MaeII	ACGT	1 cut(s)	496
MaeIII	GTNAC	1 cut(s)	220
MalI	GATC	3 cut(s)	15, 33, 563
MboI	GATC	3 cut(s)	13, 31, 561
MboII	GAAGA	5 cut(s)	38, 76, 132, 327, 656
MfeI	CAATTG	1 cut(s)	483
MflI	RGATCY	1 cut(s)	13
MluCI	AATT	2 cut(s)	156, 483
MlyI	GAGTC	1 cut(s)	277
MnlI	CCTC	6 cut(s)	16, 40, 343, 532, 563, 576
MseI	TTAA	5 cut(s)	60, 72, 507, 552, 690
MspA1I	CMGCKG	1 cut(s)	438
MspCI	CTTAAG	1 cut(s)	59
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	2 cut(s)	309, 657
NdeII	GATC	3 cut(s)	13, 31, 561
NheI	GCTAGC	2 cut(s)	395, 467
NlaIII	CATG	3 cut(s)	268, 298, 370
NlaIV	GGNNCC	1 cut(s)	543
NmuCI	GTSAC	1 cut(s)	220
NspI	RCATGY	1 cut(s)	370
PagI	TCATGA	1 cut(s)	264
PkrI	GCNGC	9 cut(s)	329, 365, 401, 437, 440, 623, 653, 656, 659
PleI	GAGTC	1 cut(s)	276
PpsI	GAGTC	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	543
PstI	CTGCAG	1 cut(s)	151
PsuI	RGATCY	1 cut(s)	13
RsaI	GTAC	2 cut(s)	430, 499
RsaNI	GTAC	2 cut(s)	429, 498
SaqAI	TTAA	5 cut(s)	60, 72, 507, 552, 690
SatI	GCNGC	9 cut(s)	328, 364, 400, 436, 439, 622, 652, 655, 658
Sau3AI	GATC	3 cut(s)	13, 31, 561
SchI	GAGTC	1 cut(s)	277
SfaNI	GCATC	3 cut(s)	146, 312, 480
SfcI	CTRYAG	2 cut(s)	18, 147
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	2 cut(s)	156, 483
SsiI	CCGC	1 cut(s)	438
SspI	AATATT	1 cut(s)	169
SspMI	CTAG	4 cut(s)	324, 396, 432, 468
TaaI	ACNGT	2 cut(s)	79, 104
TaiI	ACGT	1 cut(s)	499
TasI	AATT	2 cut(s)	156, 483
TatI	WGTACW	1 cut(s)	428
TauI	GCSGC	1 cut(s)	441
Tru1I	TTAA	5 cut(s)	60, 72, 507, 552, 690
Tru9I	TTAA	5 cut(s)	60, 72, 507, 552, 690
TscAI	CASTG	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	220
TseI	GCWGC	8 cut(s)	327, 363, 399, 435, 621, 651, 654, 657
Tsp45I	GTSAC	1 cut(s)	220
TspRI	CASTG	1 cut(s)	109
Vha464I	CTTAAG	1 cut(s)	59
XapI	RAATTY	1 cut(s)	156
XceI	RCATGY	1 cut(s)	370
XspI	CTAG	4 cut(s)	324, 396, 432, 468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.