Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

36090923 .. 36095279

Gene Structure 4357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG201000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2232 bp

ATGCCATCAATGGCTTACATTTCTCTCTCCAAACCCTCCCAATGGCGACCCCGCTCCCTCACCCCCCTCCGCCTCTTCTGCTCCTCCACCGAAACCCCAACCCCCCAACCCGACCCGCAAAATGGATCCGCCGCCGCCGCCCCGACGGCCCCAAGACCCAGGCAGCCGCGTCGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGCTGCAGAACTCCATCCGCGATTTGGTACCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATTATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTGATTGATAGTTATGGCAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAACTGGGCGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTAGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGACTGGAGACTGCCAAGCGGTTTTTTGAGGACATGAAAAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTTTCAAGAGATGAAGTCTTTTGGTATCAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATATTGTCAGTGTAAGTCTGGAGATTTGGATGCGGCTGCTGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTATGAGGCCCCAGACTACTTTGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTGGAGAAGGGAGTGAATGAGAACATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCGCTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGACAGCCTCTTATCTCTTCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGCATCAGGAAAGACTCTAAATGCGTACTCAATTTTGTGTAAAATAATGGATAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAAAGATAAAGGGAGGGGAGGCAAAAGCCAGTCAAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGATTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

743

Amino Acids

83.9

Weight (kDa)

8.8

Isoelectric Point (pI)

39.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	200 - 243	1.2e-06	PPR repeat family
PPR_3	PF13812	222 - 278	5.1e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	235 - 278	2.4e-14	PPR repeat family
PPR_3	PF13812	255 - 314	8.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	262 - 293	4.3e-10	PPR repeat
PPR_2	PF13041	266 - 314	3.7e-16	PPR repeat family
PPR	PF01535	269 - 299	2.1e-07	PPR repeat
PPR_3	PF13812	290 - 345	7.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	297 - 330	3.3e-09	PPR repeat
PPR_2	PF13041	301 - 350	1e-17	PPR repeat family
PPR	PF01535	304 - 334	4.6e-08	PPR repeat
PPR_long	PF17177	319 - 438	5.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	324 - 371	3.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	333 - 365	2.4e-07	PPR repeat
PPR_2	PF13041	485 - 530	1.7e-07	PPR repeat family
TPR_24	PF23276	496 - 612	3e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	708, 911
AatII	GACGTC	1 cut(s)	2142
Acc65I	GGTACC	1 cut(s)	268
AccB1I	GGYRCC	1 cut(s)	268
AccBSI	CCGCTC	2 cut(s)	54, 586
AccII	CGCG	3 cut(s)	169, 261, 1731
AccIII	TCCGGA	1 cut(s)	177
AclWI	GGATC	3 cut(s)	120, 133, 1471
AcsI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
AcuI	CTGAAG	2 cut(s)	1408, 1434
AcyI	GRCGYC	1 cut(s)	2139
AfaI	GTAC	3 cut(s)	270, 659, 2033
AfeI	AGCGCT	1 cut(s)	1830
AfiI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
AjnI	CCWGG	4 cut(s)	158, 230, 362, 1036
AloI	GAACNNNNNNTCC	2 cut(s)	950, 982
Alw21I	GWGCWC	2 cut(s)	1191, 1870
Alw26I	GTCTC	4 cut(s)	380, 596, 736, 743
Alw44I	GTGCAC	1 cut(s)	1866
AlwI	GGATC	3 cut(s)	120, 133, 1471
AlwNI	CAGNNNCTG	1 cut(s)	1226
Ama87I	CYCGRG	2 cut(s)	194, 1949
Aor13HI	TCCGGA	1 cut(s)	177
Aor51HI	AGCGCT	1 cut(s)	1830
AoxI	GGCC	8 cut(s)	147, 228, 415, 525, 858, 1039, 1263, 1328
ApaLI	GTGCAC	1 cut(s)	1866
ApeKI	GCWGC	5 cut(s)	163, 244, 1178, 1207, 1922
ApoI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
AseI	ATTAAT	1 cut(s)	825
Asp718I	GGTACC	1 cut(s)	268
AspLEI	GCGC	1 cut(s)	1831
AspS9I	GGNCC	6 cut(s)	148, 175, 228, 415, 490, 1329
AsuC2I	CCSGG	4 cut(s)	185, 241, 442, 1267
AsuHPI	GGTGA	4 cut(s)	52, 799, 1009, 1616
AsuII	TTCGAA	1 cut(s)	425
AvaI	CYCGRG	2 cut(s)	194, 1949
AvaII	GGWCC	2 cut(s)	175, 490
BaeGI	GKGCMC	1 cut(s)	1870
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	268
BanII	GRGCYC	1 cut(s)	185
Bbv12I	GWGCWC	2 cut(s)	1191, 1870
BbvCI	CCTCAGC	1 cut(s)	678
BbvI	GCAGC	5 cut(s)	175, 231, 1165, 1194, 1934
BceAI	ACGGC	2 cut(s)	162, 1737
BcgI	CGANNNNNNTGC	6 cut(s)	152, 186, 226, 260, 1015, 1049
BciT130I	CCWGG	4 cut(s)	160, 232, 364, 1038
BciVI	GTATCC	2 cut(s)	458, 1250
BcnI	CCSGG	4 cut(s)	185, 241, 442, 1267
BcoDI	GTCTC	4 cut(s)	380, 596, 736, 743
BfaI	CTAG	6 cut(s)	455, 696, 1356, 1554, 2114, 2148
BfmI	CTRYAG	2 cut(s)	208, 245
BfoI	RGCGCY	1 cut(s)	1832
BfuI	GTATCC	2 cut(s)	458, 1250
BglI	GCCNNNNNGGC	2 cut(s)	146, 697
BglII	AGATCT	1 cut(s)	1788
Bme1390I	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
Bme18I	GGWCC	2 cut(s)	175, 490
BmeT110I	CYCGRG	2 cut(s)	194, 1949
BmgT120I	GGNCC	6 cut(s)	148, 175, 228, 415, 490, 1329
BmiI	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
BmrFI	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
BmrI	ACTGGG	1 cut(s)	584
BmsI	GCATC	6 cut(s)	1039, 1162, 1390, 1606, 1987, 2018
BmuI	ACTGGG	1 cut(s)	584
BpmI	CTGGAG	2 cut(s)	767, 1182
Bpu10I	CCTNAGC	1 cut(s)	678
Bpu14I	TTCGAA	1 cut(s)	425
BpuEI	CTTGAG	3 cut(s)	578, 760, 1175
BpuMI	CCSGG	4 cut(s)	185, 241, 442, 1267
BsaHI	GRCGYC	1 cut(s)	2139
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	7 cut(s)	158, 195, 1113, 1266, 1393, 1480, 1491
BsaWI	WCCGGW	1 cut(s)	177
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
Bse118I	RCCGGY	1 cut(s)	527
Bse1I	ACTGG	3 cut(s)	579, 750, 2178
Bse3DI	GCAATG	3 cut(s)	485, 1203, 1917
BseAI	TCCGGA	1 cut(s)	177
BseBI	CCWGG	4 cut(s)	160, 232, 364, 1038
BseDI	CCNNGG	7 cut(s)	158, 195, 1113, 1266, 1393, 1480, 1491
BseGI	GGATG	7 cut(s)	255, 490, 859, 964, 1069, 1177, 2002
BseLI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
BseMI	GCAATG	3 cut(s)	485, 1203, 1917
BseMII	CTCAG	2 cut(s)	669, 1085
BseNI	ACTGG	3 cut(s)	579, 750, 2178
BseRI	GAGGAG	2 cut(s)	73, 801
BseSI	GKGCMC	1 cut(s)	1870
BseXI	GCAGC	5 cut(s)	175, 231, 1165, 1194, 1934
BsgI	GTGCAG	1 cut(s)	1193
Bsh1236I	CGCG	3 cut(s)	169, 261, 1731
BshFI	GGCC	8 cut(s)	149, 230, 417, 527, 860, 1041, 1265, 1330
BshNI	GGYRCC	1 cut(s)	268
BsiHKAI	GWGCWC	2 cut(s)	1191, 1870
BsiHKCI	CYCGRG	2 cut(s)	194, 1949
BsiSI	CCGG	6 cut(s)	178, 185, 241, 442, 528, 1266
BslI	CCNNNNNNNGG	5 cut(s)	42, 122, 184, 265, 470
BsmAI	GTCTC	4 cut(s)	380, 596, 736, 743
BsnI	GGCC	8 cut(s)	149, 230, 417, 527, 860, 1041, 1265, 1330
Bso31I	GGTCTC	1 cut(s)	380
BsoBI	CYCGRG	2 cut(s)	194, 1949
Bsp119I	TTCGAA	1 cut(s)	425
Bsp1286I	GDGCHC	3 cut(s)	185, 1191, 1870
Bsp13I	TCCGGA	1 cut(s)	177
Bsp143I	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
Bsp19I	CCATGG	1 cut(s)	1393
BspANI	GGCC	8 cut(s)	149, 230, 417, 527, 860, 1041, 1265, 1330
BspCNI	CTCAG	2 cut(s)	670, 1084
BspEI	TCCGGA	1 cut(s)	177
BspFNI	CGCG	3 cut(s)	169, 261, 1731
BspLI	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
BspMAI	CTGCAG	2 cut(s)	212, 249
BspPI	GGATC	3 cut(s)	120, 133, 1471
BspT104I	TTCGAA	1 cut(s)	425
BspT107I	GGYRCC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	380
BsrBI	CCGCTC	2 cut(s)	54, 586
BsrDI	GCAATG	3 cut(s)	485, 1203, 1917
BsrFI	RCCGGY	1 cut(s)	527
BsrI	ACTGG	3 cut(s)	579, 750, 2178
BssAI	RCCGGY	1 cut(s)	527
BssECI	CCNNGG	7 cut(s)	158, 195, 1113, 1266, 1393, 1480, 1491
BssMI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
BssNI	GRCGYC	1 cut(s)	2139
BssT1I	CCWWGG	3 cut(s)	1113, 1393, 1491
Bst2UI	CCWGG	4 cut(s)	160, 232, 364, 1038
Bst4CI	ACNGT	1 cut(s)	1637
Bst6I	CTCTTC	7 cut(s)	80, 500, 647, 1427, 1537, 1733, 1899
BstACI	GRCGYC	1 cut(s)	2139
BstAPI	GCANNNNNTGC	1 cut(s)	2213
BstBI	TTCGAA	1 cut(s)	425
BstC8I	GCNNGC	4 cut(s)	529, 1488, 1726, 2209
BstDEI	CTNAG	4 cut(s)	678, 1071, 1595, 2005
BstDSI	CCRYGG	2 cut(s)	1393, 1480
BstF5I	GGATG	7 cut(s)	255, 490, 859, 964, 1069, 1177, 2002
BstFNI	CGCG	3 cut(s)	169, 261, 1731
BstH2I	RGCGCY	1 cut(s)	1832
BstHHI	GCGC	1 cut(s)	1831
BstKTI	GATC	6 cut(s)	128, 1279, 1479, 1791, 1846, 2095
BstMAI	GTCTC	4 cut(s)	380, 596, 736, 743
BstMBI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
BstNI	CCWGG	4 cut(s)	160, 232, 364, 1038
BstNSI	RCATGY	3 cut(s)	1490, 1658, 2207
BstSCI	CCNGG	8 cut(s)	158, 183, 230, 239, 362, 440, 1036, 1265
BstSFI	CTRYAG	2 cut(s)	208, 245
BstSLI	GKGCMC	1 cut(s)	1870
BstUI	CGCG	3 cut(s)	169, 261, 1731
BstV1I	GCAGC	5 cut(s)	175, 231, 1165, 1194, 1934
BstX2I	RGATCY	2 cut(s)	125, 1788
BstXI	CCANNNNNNTGG	1 cut(s)	1792
BstYI	RGATCY	2 cut(s)	125, 1788
BsuI	GTATCC	2 cut(s)	458, 1250
BsuRI	GGCC	8 cut(s)	149, 230, 417, 527, 860, 1041, 1265, 1330
BtgI	CCRYGG	2 cut(s)	1393, 1480
BtsCI	GGATG	7 cut(s)	255, 490, 859, 964, 1069, 1177, 2002
BtsIMutI	CAGTG	3 cut(s)	1157, 2070, 2085
Cac8I	GCNNGC	4 cut(s)	529, 1488, 1726, 2209
CaiI	CAGNNNCTG	1 cut(s)	1226
CfoI	GCGC	1 cut(s)	1831
Cfr10I	RCCGGY	1 cut(s)	527
Cfr13I	GGNCC	6 cut(s)	148, 175, 228, 415, 490, 1329
CseI	GACGC	1 cut(s)	158
Csp6I	GTAC	3 cut(s)	269, 658, 2032
CviQI	GTAC	3 cut(s)	269, 658, 2032
DdeI	CTNAG	4 cut(s)	678, 1071, 1595, 2005
DpnI	GATC	6 cut(s)	127, 1278, 1478, 1790, 1845, 2094
DpnII	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
DraI	TTTAAA	1 cut(s)	1527
Eam1104I	CTCTTC	7 cut(s)	80, 500, 647, 1427, 1537, 1733, 1899
EarI	CTCTTC	7 cut(s)	80, 500, 647, 1427, 1537, 1733, 1899
EciI	GGCGGA	2 cut(s)	59, 118
Eco130I	CCWWGG	3 cut(s)	1113, 1393, 1491
Eco147I	AGGCCT	1 cut(s)	1041
Eco24I	GRGCYC	1 cut(s)	185
Eco31I	GGTCTC	1 cut(s)	380
Eco47I	GGWCC	2 cut(s)	175, 490
Eco47III	AGCGCT	1 cut(s)	1830
Eco57I	CTGAAG	2 cut(s)	1408, 1434
Eco88I	CYCGRG	2 cut(s)	194, 1949
EcoO109I	RGGNCCY	2 cut(s)	490, 1329
EcoRI	GAATTC	1 cut(s)	275
EcoRII	CCWGG	4 cut(s)	158, 230, 362, 1036
EcoT14I	CCWWGG	3 cut(s)	1113, 1393, 1491
EcoT38I	GRGCYC	1 cut(s)	185
ErhI	CCWWGG	3 cut(s)	1113, 1393, 1491
FalI	AAGNNNNNCTT	2 cut(s)	644, 676
FauI	CCCGC	2 cut(s)	59, 123
FauNDI	CATATG	1 cut(s)	669
FokI	GGATG	7 cut(s)	242, 497, 866, 971, 1076, 1184, 2009
FriOI	GRGCYC	1 cut(s)	185
FspBI	CTAG	6 cut(s)	455, 696, 1356, 1554, 2114, 2148
GlaI	GCGC	1 cut(s)	1830
GsuI	CTGGAG	2 cut(s)	767, 1182
HaeII	RGCGCY	1 cut(s)	1832
HaeIII	GGCC	8 cut(s)	149, 230, 417, 527, 860, 1041, 1265, 1330
HapII	CCGG	6 cut(s)	178, 185, 241, 442, 528, 1266
HgaI	GACGC	1 cut(s)	158
HhaI	GCGC	1 cut(s)	1831
Hin1I	GRCGYC	1 cut(s)	2139
Hin6I	GCGC	1 cut(s)	1829
HinP1I	GCGC	1 cut(s)	1829
HindIII	AAGCTT	1 cut(s)	551
HpaII	CCGG	6 cut(s)	178, 185, 241, 442, 528, 1266
HphI	GGTGA	4 cut(s)	52, 799, 1009, 1616
Hpy166II	GTNNAC	3 cut(s)	1288, 1607, 1868
Hpy8I	GTNNAC	3 cut(s)	1288, 1607, 1868
Hpy99I	CGWCG	2 cut(s)	148, 174
HpyAV	CCTTC	6 cut(s)	314, 463, 562, 877, 1474, 1747
HpyCH4III	ACNGT	1 cut(s)	1637
HpyCH4IV	ACGT	1 cut(s)	2139
HpyF3I	CTNAG	4 cut(s)	678, 1071, 1595, 2005
HpySE526I	ACGT	1 cut(s)	2139
Hsp92I	GRCGYC	1 cut(s)	2139
HspAI	GCGC	1 cut(s)	1829
Kpn2I	TCCGGA	1 cut(s)	177
KpnI	GGTACC	1 cut(s)	272
KroI	GCCGGC	1 cut(s)	527
KroNI	GCCGGC	1 cut(s)	529
Kzo9I	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
LmnI	GCTCC	6 cut(s)	59, 86, 180, 311, 583, 1114
Lsp1109I	GCAGC	5 cut(s)	175, 231, 1165, 1194, 1934
LweI	GCATC	6 cut(s)	1039, 1162, 1390, 1606, 1987, 2018
MaeI	CTAG	6 cut(s)	455, 696, 1356, 1554, 2114, 2148
MaeII	ACGT	1 cut(s)	2139
MaeIII	GTNAC	4 cut(s)	805, 1015, 2068, 2120
MalI	GATC	6 cut(s)	127, 1278, 1478, 1790, 1845, 2094
MbiI	CCGCTC	2 cut(s)	54, 586
MboI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
MflI	RGATCY	2 cut(s)	125, 1788
MhlI	GDGCHC	3 cut(s)	185, 1191, 1870
MlyI	GAGTC	4 cut(s)	551, 598, 1702, 2014
MmeI	TCCRAC	3 cut(s)	348, 1241, 1974
MroI	TCCGGA	1 cut(s)	177
MroNI	GCCGGC	1 cut(s)	527
MseI	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
MspA1I	CMGCKG	2 cut(s)	1613, 1925
MspI	CCGG	6 cut(s)	178, 185, 241, 442, 528, 1266
MspR9I	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
MvaI	CCWGG	4 cut(s)	160, 232, 364, 1038
MvnI	CGCG	3 cut(s)	169, 261, 1731
NaeI	GCCGGC	1 cut(s)	529
NciI	CCSGG	4 cut(s)	185, 241, 442, 1267
NcoI	CCATGG	1 cut(s)	1393
NdeI	CATATG	1 cut(s)	669
NdeII	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
NgoMIV	GCCGGC	1 cut(s)	527
NlaIV	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
NmeAIII	GCCGAG	2 cut(s)	443, 886
NmuCI	GTSAC	3 cut(s)	805, 1015, 2068
NspI	RCATGY	3 cut(s)	1490, 1658, 2207
NspV	TTCGAA	1 cut(s)	425
PaeI	GCATGC	1 cut(s)	1490
PaeR7I	CTCGAG	1 cut(s)	1949
PceI	AGGCCT	1 cut(s)	1041
PdiI	GCCGGC	1 cut(s)	529
PfeI	GAWTC	6 cut(s)	223, 409, 1454, 1508, 1565, 1664
PleI	GAGTC	4 cut(s)	550, 597, 1701, 2014
PpsI	GAGTC	4 cut(s)	550, 597, 1701, 2014
PpuMI	RGGWCCY	1 cut(s)	490
PshBI	ATTAAT	1 cut(s)	825
PsiI	TTATAA	2 cut(s)	708, 911
Psp5II	RGGWCCY	1 cut(s)	490
Psp6I	CCWGG	4 cut(s)	158, 230, 362, 1036
PspGI	CCWGG	4 cut(s)	158, 230, 362, 1036
PspN4I	GGNNCC	8 cut(s)	127, 150, 176, 182, 270, 313, 1331, 1551
PspPI	GGNCC	6 cut(s)	148, 175, 228, 415, 490, 1329
PspPPI	RGGWCCY	1 cut(s)	490
PstI	CTGCAG	2 cut(s)	212, 249
PstNI	CAGNNNCTG	1 cut(s)	1226
PsuI	RGATCY	2 cut(s)	125, 1788
PvuII	CAGCTG	2 cut(s)	1613, 1925
RsaI	GTAC	3 cut(s)	270, 659, 2033
RsaNI	GTAC	3 cut(s)	269, 658, 2032
SaqAI	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
Sau3AI	GATC	6 cut(s)	125, 1276, 1476, 1788, 1843, 2092
Sau96I	GGNCC	6 cut(s)	148, 175, 228, 415, 490, 1329
SchI	GAGTC	4 cut(s)	551, 598, 1702, 2014
ScrFI	CCNGG	8 cut(s)	160, 185, 232, 241, 364, 442, 1038, 1267
SduI	GDGCHC	3 cut(s)	185, 1191, 1870
SfaNI	GCATC	6 cut(s)	1039, 1162, 1390, 1606, 1987, 2018
SfcI	CTRYAG	2 cut(s)	208, 245
Sfr274I	CTCGAG	1 cut(s)	1949
SfuI	TTCGAA	1 cut(s)	425
SinI	GGWCC	2 cut(s)	175, 490
SlaI	CTCGAG	1 cut(s)	1949
SmlI	CTYRAG	4 cut(s)	593, 739, 1190, 1949
SmoI	CTYRAG	4 cut(s)	593, 739, 1190, 1949
SphI	GCATGC	1 cut(s)	1490
SseBI	AGGCCT	1 cut(s)	1041
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	6 cut(s)	455, 696, 1356, 1554, 2114, 2148
StuI	AGGCCT	1 cut(s)	1041
StyD4I	CCNGG	8 cut(s)	158, 183, 230, 239, 362, 440, 1036, 1265
StyI	CCWWGG	3 cut(s)	1113, 1393, 1491
TaaI	ACNGT	1 cut(s)	1637
TaiI	ACGT	1 cut(s)	2142
TaqI	TCGA	6 cut(s)	279, 354, 425, 1025, 1279, 1950
TaqII	GACCGA	1 cut(s)	535
TauI	GCSGC	6 cut(s)	134, 137, 140, 169, 1178, 1731
TfiI	GAWTC	6 cut(s)	223, 409, 1454, 1508, 1565, 1664
Tru1I	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
Tru9I	TTAA	8 cut(s)	663, 825, 843, 930, 1526, 1584, 1929, 2100
TscAI	CASTG	3 cut(s)	1157, 2077, 2092
TseFI	GTSAC	3 cut(s)	805, 1015, 2068
TseI	GCWGC	5 cut(s)	163, 244, 1178, 1207, 1922
Tsp45I	GTSAC	3 cut(s)	805, 1015, 2068
TspDTI	ATGAA	8 cut(s)	487, 491, 581, 791, 1001, 1080, 1451, 1751
TspGWI	ACGGA	3 cut(s)	324, 1469, 1852
TspRI	CASTG	3 cut(s)	1157, 2077, 2092
VneI	GTGCAC	1 cut(s)	1866
VpaK11BI	GGWCC	2 cut(s)	175, 490
VspI	ATTAAT	1 cut(s)	825
XapI	RAATTY	4 cut(s)	275, 1501, 1874, 1970
XbaI	TCTAGA	2 cut(s)	2113, 2147
XceI	RCATGY	3 cut(s)	1490, 1658, 2207
XcmI	CCANNNNNNNNNTGG	1 cut(s)	262
XhoI	CTCGAG	1 cut(s)	1949
XspI	CTAG	6 cut(s)	455, 696, 1356, 1554, 2114, 2148
ZraI	GACGTC	1 cut(s)	2140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.