Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

34326377 .. 34330192

Gene Structure 3816 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG206000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2235 bp

ATGCCATCAATGGCTTACATTTCTCTCTCCAAACCCTCCCAATGGCGACCCCGCTCCCTCACCCTCCCCCGCCTCTTCTGCTCCTCCACCGAATCCCCGACCCCCCAACCCGACCCGCAAAATGGATCCGCCGCCGCCGCCGCCCCGACGGCCCCAAGACCCAGGCAGCCGCGTCGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGCTGCAGAACTCCATCCGCGATTTGGTACCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATTATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGCAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAACTGGGCGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTCGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGATTGGAGACTGCAAAGCGGTTTTTTGAGGACATGAAAAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTATCAAGAGATGAAGTCTTTTGGTATTAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCAGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATGTTGTCAGTGTAAGTCTGGAGATTTGGATGCGGCTGCCGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTATGAGGCCCCAGACTACTATGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTGAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAATTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCGCTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGACAGCCTCTTATCTCTTCTTGCTGAAAAAGGAAAGACAATTGCAGCTGTTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGCATCAGGAAAGACTCTAAATGCGTACTCAATTTTGTGTAAAATAATGGATAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAATGATAAAGAGAGGGGAGGCAAAAGCCAGTCGAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGATTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

744

Amino Acids

84.04

Weight (kDa)

8.78

Isoelectric Point (pI)

40.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	201 - 244	1.2e-06	PPR repeat family
PPR_2	PF13041	236 - 279	2.4e-14	PPR repeat family
PPR_long	PF17177	250 - 346	2.5e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	256 - 315	8.5e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	263 - 294	4.3e-10	PPR repeat
PPR_2	PF13041	267 - 315	3.7e-16	PPR repeat family
PPR	PF01535	270 - 300	2.1e-07	PPR repeat
PPR_1	PF12854	298 - 331	5.6e-08	PPR repeat
PPR_2	PF13041	302 - 351	1.5e-17	PPR repeat family
PPR	PF01535	305 - 335	1.4e-07	PPR repeat
PPR_long	PF17177	320 - 439	1.2e-11	Pentacotripeptide-repeat region of PRORP
PPR_1	PF12854	334 - 366	2.4e-07	PPR repeat
TPR_24	PF23276	497 - 613	3.2e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	711, 914
AatII	GACGTC	1 cut(s)	2145
Acc65I	GGTACC	1 cut(s)	271
AccB1I	GGYRCC	1 cut(s)	271
AccBSI	CCGCTC	2 cut(s)	54, 589
AccII	CGCG	3 cut(s)	172, 264, 1734
AccIII	TCCGGA	1 cut(s)	180
AclWI	GGATC	3 cut(s)	120, 133, 1474
AcsI	RAATTY	4 cut(s)	278, 1504, 1877, 1973
AcuI	CTGAAG	2 cut(s)	1411, 1437
AcyI	GRCGYC	1 cut(s)	2142
AfaI	GTAC	3 cut(s)	273, 662, 2036
AfeI	AGCGCT	1 cut(s)	1833
AfiI	CCNNNNNNNGG	5 cut(s)	42, 122, 187, 268, 473
AjnI	CCWGG	4 cut(s)	161, 233, 365, 1039
AloI	GAACNNNNNNTCC	2 cut(s)	953, 985
Alw21I	GWGCWC	2 cut(s)	1194, 1873
Alw26I	GTCTC	3 cut(s)	383, 599, 746
Alw44I	GTGCAC	1 cut(s)	1869
AlwI	GGATC	3 cut(s)	120, 133, 1474
AlwNI	CAGNNNCTG	1 cut(s)	1229
Ama87I	CYCGRG	2 cut(s)	197, 1952
Aor13HI	TCCGGA	1 cut(s)	180
Aor51HI	AGCGCT	1 cut(s)	1833
AoxI	GGCC	8 cut(s)	150, 231, 418, 528, 861, 1042, 1266, 1331
ApaLI	GTGCAC	1 cut(s)	1869
ApeKI	GCWGC	5 cut(s)	166, 247, 1181, 1210, 1925
ApoI	RAATTY	4 cut(s)	278, 1504, 1877, 1973
AseI	ATTAAT	1 cut(s)	828
Asp718I	GGTACC	1 cut(s)	271
AspLEI	GCGC	1 cut(s)	1834
AspS9I	GGNCC	6 cut(s)	151, 178, 231, 418, 493, 1332
AsuC2I	CCSGG	4 cut(s)	188, 244, 445, 1270
AsuHPI	GGTGA	4 cut(s)	52, 802, 1012, 1619
AsuII	TTCGAA	1 cut(s)	428
AvaI	CYCGRG	2 cut(s)	197, 1952
AvaII	GGWCC	2 cut(s)	178, 493
BaeGI	GKGCMC	1 cut(s)	1873
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	271
BanII	GRGCYC	1 cut(s)	188
Bbv12I	GWGCWC	2 cut(s)	1194, 1873
BbvCI	CCTCAGC	1 cut(s)	681
BbvI	GCAGC	5 cut(s)	178, 234, 1168, 1197, 1937
BceAI	ACGGC	2 cut(s)	165, 1740
BcgI	CGANNNNNNTGC	6 cut(s)	155, 189, 229, 263, 1018, 1052
BciT130I	CCWGG	4 cut(s)	163, 235, 367, 1041
BciVI	GTATCC	2 cut(s)	461, 1253
BcnI	CCSGG	4 cut(s)	188, 244, 445, 1270
BcoDI	GTCTC	3 cut(s)	383, 599, 746
BfaI	CTAG	5 cut(s)	458, 1359, 1557, 2117, 2151
BfmI	CTRYAG	2 cut(s)	211, 248
BfoI	RGCGCY	1 cut(s)	1835
BfuI	GTATCC	2 cut(s)	461, 1253
BglI	GCCNNNNNGGC	2 cut(s)	149, 700
BglII	AGATCT	1 cut(s)	1791
Bme1390I	CCNGG	8 cut(s)	163, 188, 235, 244, 367, 445, 1041, 1270
Bme18I	GGWCC	2 cut(s)	178, 493
BmeT110I	CYCGRG	2 cut(s)	197, 1952
BmgT120I	GGNCC	6 cut(s)	151, 178, 231, 418, 493, 1332
BmiI	GGNNCC	8 cut(s)	127, 153, 179, 185, 273, 316, 1334, 1554
BmrFI	CCNGG	8 cut(s)	163, 188, 235, 244, 367, 445, 1041, 1270
BmrI	ACTGGG	1 cut(s)	587
BmsI	GCATC	6 cut(s)	1042, 1165, 1393, 1609, 1990, 2021
BmuI	ACTGGG	1 cut(s)	587
BpmI	CTGGAG	1 cut(s)	1185
Bpu10I	CCTNAGC	1 cut(s)	681
Bpu14I	TTCGAA	1 cut(s)	428
BpuEI	CTTGAG	3 cut(s)	581, 763, 1178
BpuMI	CCSGG	4 cut(s)	188, 244, 445, 1270
BsaHI	GRCGYC	1 cut(s)	2142
BsaI	GGTCTC	1 cut(s)	383
BsaJI	CCNNGG	7 cut(s)	161, 198, 1116, 1269, 1396, 1483, 1494
BsaWI	WCCGGW	1 cut(s)	180
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 122, 187, 268, 473
Bse118I	RCCGGY	1 cut(s)	530
Bse1I	ACTGG	2 cut(s)	582, 2181
Bse3DI	GCAATG	2 cut(s)	488, 1206
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	4 cut(s)	163, 235, 367, 1041
BseDI	CCNNGG	7 cut(s)	161, 198, 1116, 1269, 1396, 1483, 1494
BseGI	GGATG	7 cut(s)	258, 493, 862, 967, 1072, 1180, 2005
BseLI	CCNNNNNNNGG	5 cut(s)	42, 122, 187, 268, 473
BseMI	GCAATG	2 cut(s)	488, 1206
BseMII	CTCAG	2 cut(s)	672, 1088
BseNI	ACTGG	2 cut(s)	582, 2181
BseRI	GAGGAG	2 cut(s)	73, 804
BseSI	GKGCMC	1 cut(s)	1873
BseXI	GCAGC	5 cut(s)	178, 234, 1168, 1197, 1937
BsgI	GTGCAG	1 cut(s)	1196
Bsh1236I	CGCG	3 cut(s)	172, 264, 1734
BshFI	GGCC	8 cut(s)	152, 233, 420, 530, 863, 1044, 1268, 1333
BshNI	GGYRCC	1 cut(s)	271
BsiHKAI	GWGCWC	2 cut(s)	1194, 1873
BsiHKCI	CYCGRG	2 cut(s)	197, 1952
BsiSI	CCGG	6 cut(s)	181, 188, 244, 445, 531, 1269
BslI	CCNNNNNNNGG	5 cut(s)	42, 122, 187, 268, 473
BsmAI	GTCTC	3 cut(s)	383, 599, 746
BsnI	GGCC	8 cut(s)	152, 233, 420, 530, 863, 1044, 1268, 1333
Bso31I	GGTCTC	1 cut(s)	383
BsoBI	CYCGRG	2 cut(s)	197, 1952
Bsp119I	TTCGAA	1 cut(s)	428
Bsp1286I	GDGCHC	3 cut(s)	188, 1194, 1873
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
Bsp19I	CCATGG	1 cut(s)	1396
BspANI	GGCC	8 cut(s)	152, 233, 420, 530, 863, 1044, 1268, 1333
BspCNI	CTCAG	2 cut(s)	673, 1087
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	3 cut(s)	172, 264, 1734
BspLI	GGNNCC	8 cut(s)	127, 153, 179, 185, 273, 316, 1334, 1554
BspMAI	CTGCAG	2 cut(s)	215, 252
BspPI	GGATC	3 cut(s)	120, 133, 1474
BspT104I	TTCGAA	1 cut(s)	428
BspT107I	GGYRCC	1 cut(s)	271
BspTNI	GGTCTC	1 cut(s)	383
BsrBI	CCGCTC	2 cut(s)	54, 589
BsrDI	GCAATG	2 cut(s)	488, 1206
BsrFI	RCCGGY	1 cut(s)	530
BsrI	ACTGG	2 cut(s)	582, 2181
BssAI	RCCGGY	1 cut(s)	530
BssECI	CCNNGG	7 cut(s)	161, 198, 1116, 1269, 1396, 1483, 1494
BssMI	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
BssNI	GRCGYC	1 cut(s)	2142
BssT1I	CCWWGG	3 cut(s)	1116, 1396, 1494
Bst2UI	CCWGG	4 cut(s)	163, 235, 367, 1041
Bst4CI	ACNGT	1 cut(s)	1640
Bst6I	CTCTTC	7 cut(s)	80, 503, 650, 1430, 1540, 1736, 1902
BstACI	GRCGYC	1 cut(s)	2142
BstAPI	GCANNNNNTGC	1 cut(s)	2216
BstBI	TTCGAA	1 cut(s)	428
BstC8I	GCNNGC	4 cut(s)	532, 1491, 1729, 2212
BstDEI	CTNAG	4 cut(s)	681, 1074, 1598, 2008
BstDSI	CCRYGG	2 cut(s)	1396, 1483
BstF5I	GGATG	7 cut(s)	258, 493, 862, 967, 1072, 1180, 2005
BstFNI	CGCG	3 cut(s)	172, 264, 1734
BstH2I	RGCGCY	1 cut(s)	1835
BstHHI	GCGC	1 cut(s)	1834
BstKTI	GATC	6 cut(s)	128, 1282, 1482, 1794, 1849, 2098
BstMAI	GTCTC	3 cut(s)	383, 599, 746
BstMBI	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
BstNI	CCWGG	4 cut(s)	163, 235, 367, 1041
BstNSI	RCATGY	3 cut(s)	1493, 1661, 2210
BstSCI	CCNGG	8 cut(s)	161, 186, 233, 242, 365, 443, 1039, 1268
BstSFI	CTRYAG	2 cut(s)	211, 248
BstSLI	GKGCMC	1 cut(s)	1873
BstUI	CGCG	3 cut(s)	172, 264, 1734
BstV1I	GCAGC	5 cut(s)	178, 234, 1168, 1197, 1937
BstX2I	RGATCY	2 cut(s)	125, 1791
BstXI	CCANNNNNNTGG	1 cut(s)	1795
BstYI	RGATCY	2 cut(s)	125, 1791
BsuI	GTATCC	2 cut(s)	461, 1253
BsuRI	GGCC	8 cut(s)	152, 233, 420, 530, 863, 1044, 1268, 1333
BtgI	CCRYGG	2 cut(s)	1396, 1483
BtsCI	GGATG	7 cut(s)	258, 493, 862, 967, 1072, 1180, 2005
BtsIMutI	CAGTG	3 cut(s)	1160, 2073, 2088
Cac8I	GCNNGC	4 cut(s)	532, 1491, 1729, 2212
CaiI	CAGNNNCTG	1 cut(s)	1229
CfoI	GCGC	1 cut(s)	1834
Cfr10I	RCCGGY	1 cut(s)	530
Cfr13I	GGNCC	6 cut(s)	151, 178, 231, 418, 493, 1332
CseI	GACGC	1 cut(s)	161
Csp6I	GTAC	3 cut(s)	272, 661, 2035
CviQI	GTAC	3 cut(s)	272, 661, 2035
DdeI	CTNAG	4 cut(s)	681, 1074, 1598, 2008
DpnI	GATC	6 cut(s)	127, 1281, 1481, 1793, 1848, 2097
DpnII	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
Eam1104I	CTCTTC	7 cut(s)	80, 503, 650, 1430, 1540, 1736, 1902
EarI	CTCTTC	7 cut(s)	80, 503, 650, 1430, 1540, 1736, 1902
EciI	GGCGGA	1 cut(s)	118
Eco130I	CCWWGG	3 cut(s)	1116, 1396, 1494
Eco147I	AGGCCT	1 cut(s)	1044
Eco24I	GRGCYC	1 cut(s)	188
Eco31I	GGTCTC	1 cut(s)	383
Eco47I	GGWCC	2 cut(s)	178, 493
Eco47III	AGCGCT	1 cut(s)	1833
Eco57I	CTGAAG	2 cut(s)	1411, 1437
Eco88I	CYCGRG	2 cut(s)	197, 1952
EcoO109I	RGGNCCY	2 cut(s)	493, 1332
EcoRI	GAATTC	1 cut(s)	278
EcoRII	CCWGG	4 cut(s)	161, 233, 365, 1039
EcoT14I	CCWWGG	3 cut(s)	1116, 1396, 1494
EcoT38I	GRGCYC	1 cut(s)	188
ErhI	CCWWGG	3 cut(s)	1116, 1396, 1494
FalI	AAGNNNNNCTT	2 cut(s)	647, 679
FauI	CCCGC	3 cut(s)	59, 77, 123
FauNDI	CATATG	1 cut(s)	672
FokI	GGATG	7 cut(s)	245, 500, 869, 974, 1079, 1187, 2012
FriOI	GRGCYC	1 cut(s)	188
FspBI	CTAG	5 cut(s)	458, 1359, 1557, 2117, 2151
GlaI	GCGC	1 cut(s)	1833
GsuI	CTGGAG	1 cut(s)	1185
HaeII	RGCGCY	1 cut(s)	1835
HaeIII	GGCC	8 cut(s)	152, 233, 420, 530, 863, 1044, 1268, 1333
HapII	CCGG	6 cut(s)	181, 188, 244, 445, 531, 1269
HgaI	GACGC	1 cut(s)	161
HhaI	GCGC	1 cut(s)	1834
Hin1I	GRCGYC	1 cut(s)	2142
Hin6I	GCGC	1 cut(s)	1832
HinP1I	GCGC	1 cut(s)	1832
HindIII	AAGCTT	1 cut(s)	554
HpaII	CCGG	6 cut(s)	181, 188, 244, 445, 531, 1269
HphI	GGTGA	4 cut(s)	52, 802, 1012, 1619
Hpy166II	GTNNAC	3 cut(s)	1291, 1610, 1871
Hpy188I	TCNGA	9 cut(s)	328, 350, 567, 1077, 1221, 1479, 1510, 1814, 2100
Hpy8I	GTNNAC	3 cut(s)	1291, 1610, 1871
Hpy99I	CGWCG	2 cut(s)	151, 177
HpyAV	CCTTC	6 cut(s)	317, 466, 565, 880, 1477, 1750
HpyCH4III	ACNGT	1 cut(s)	1640
HpyCH4IV	ACGT	1 cut(s)	2142
HpyF3I	CTNAG	4 cut(s)	681, 1074, 1598, 2008
HpySE526I	ACGT	1 cut(s)	2142
Hsp92I	GRCGYC	1 cut(s)	2142
HspAI	GCGC	1 cut(s)	1832
Kpn2I	TCCGGA	1 cut(s)	180
KpnI	GGTACC	1 cut(s)	275
KroI	GCCGGC	1 cut(s)	530
KroNI	GCCGGC	1 cut(s)	532
Kzo9I	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
LmnI	GCTCC	6 cut(s)	59, 86, 183, 314, 586, 1117
Lsp1109I	GCAGC	5 cut(s)	178, 234, 1168, 1197, 1937
LweI	GCATC	6 cut(s)	1042, 1165, 1393, 1609, 1990, 2021
MaeI	CTAG	5 cut(s)	458, 1359, 1557, 2117, 2151
MaeII	ACGT	1 cut(s)	2142
MaeIII	GTNAC	4 cut(s)	808, 1018, 2071, 2123
MalI	GATC	6 cut(s)	127, 1281, 1481, 1793, 1848, 2097
MbiI	CCGCTC	2 cut(s)	54, 589
MboI	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
MfeI	CAATTG	1 cut(s)	1920
MflI	RGATCY	2 cut(s)	125, 1791
MhlI	GDGCHC	3 cut(s)	188, 1194, 1873
MlyI	GAGTC	5 cut(s)	554, 601, 691, 1705, 2017
MmeI	TCCRAC	3 cut(s)	351, 1244, 1977
MroI	TCCGGA	1 cut(s)	180
MroNI	GCCGGC	1 cut(s)	530
MseI	TTAA	8 cut(s)	666, 828, 846, 933, 1005, 1587, 1932, 2103
MspA1I	CMGCKG	2 cut(s)	1616, 1928
MspI	CCGG	6 cut(s)	181, 188, 244, 445, 531, 1269
MspR9I	CCNGG	8 cut(s)	163, 188, 235, 244, 367, 445, 1041, 1270
MunI	CAATTG	1 cut(s)	1920
MvaI	CCWGG	4 cut(s)	163, 235, 367, 1041
MvnI	CGCG	3 cut(s)	172, 264, 1734
NaeI	GCCGGC	1 cut(s)	532
NciI	CCSGG	4 cut(s)	188, 244, 445, 1270
NcoI	CCATGG	1 cut(s)	1396
NdeI	CATATG	1 cut(s)	672
NdeII	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
NgoMIV	GCCGGC	1 cut(s)	530
NlaIV	GGNNCC	8 cut(s)	127, 153, 179, 185, 273, 316, 1334, 1554
NmeAIII	GCCGAG	3 cut(s)	446, 679, 889
NmuCI	GTSAC	3 cut(s)	808, 1018, 2071
NspI	RCATGY	3 cut(s)	1493, 1661, 2210
NspV	TTCGAA	1 cut(s)	428
PaeI	GCATGC	1 cut(s)	1493
PaeR7I	CTCGAG	1 cut(s)	1952
PceI	AGGCCT	1 cut(s)	1044
PdiI	GCCGGC	1 cut(s)	532
PfeI	GAWTC	7 cut(s)	92, 226, 412, 1457, 1511, 1568, 1667
PleI	GAGTC	5 cut(s)	553, 600, 691, 1704, 2017
PpsI	GAGTC	5 cut(s)	553, 600, 691, 1704, 2017
PpuMI	RGGWCCY	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	828
PsiI	TTATAA	2 cut(s)	711, 914
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	4 cut(s)	161, 233, 365, 1039
PspGI	CCWGG	4 cut(s)	161, 233, 365, 1039
PspN4I	GGNNCC	8 cut(s)	127, 153, 179, 185, 273, 316, 1334, 1554
PspPI	GGNCC	6 cut(s)	151, 178, 231, 418, 493, 1332
PspPPI	RGGWCCY	1 cut(s)	493
PstI	CTGCAG	2 cut(s)	215, 252
PstNI	CAGNNNCTG	1 cut(s)	1229
PsuI	RGATCY	2 cut(s)	125, 1791
PvuII	CAGCTG	2 cut(s)	1616, 1928
RsaI	GTAC	3 cut(s)	273, 662, 2036
RsaNI	GTAC	3 cut(s)	272, 661, 2035
SaqAI	TTAA	8 cut(s)	666, 828, 846, 933, 1005, 1587, 1932, 2103
Sau3AI	GATC	6 cut(s)	125, 1279, 1479, 1791, 1846, 2095
Sau96I	GGNCC	6 cut(s)	151, 178, 231, 418, 493, 1332
SchI	GAGTC	5 cut(s)	554, 601, 691, 1705, 2017
ScrFI	CCNGG	8 cut(s)	163, 188, 235, 244, 367, 445, 1041, 1270
SduI	GDGCHC	3 cut(s)	188, 1194, 1873
SfaNI	GCATC	6 cut(s)	1042, 1165, 1393, 1609, 1990, 2021
SfcI	CTRYAG	2 cut(s)	211, 248
Sfr274I	CTCGAG	1 cut(s)	1952
SfuI	TTCGAA	1 cut(s)	428
SinI	GGWCC	2 cut(s)	178, 493
SlaI	CTCGAG	1 cut(s)	1952
SmlI	CTYRAG	4 cut(s)	596, 742, 1193, 1952
SmoI	CTYRAG	4 cut(s)	596, 742, 1193, 1952
SphI	GCATGC	1 cut(s)	1493
SseBI	AGGCCT	1 cut(s)	1044
SspI	AATATT	1 cut(s)	715
SspMI	CTAG	5 cut(s)	458, 1359, 1557, 2117, 2151
StuI	AGGCCT	1 cut(s)	1044
StyD4I	CCNGG	8 cut(s)	161, 186, 233, 242, 365, 443, 1039, 1268
StyI	CCWWGG	3 cut(s)	1116, 1396, 1494
TaaI	ACNGT	1 cut(s)	1640
TaiI	ACGT	1 cut(s)	2145
TaqI	TCGA	7 cut(s)	282, 357, 428, 1028, 1282, 1953, 2185
TaqII	GACCGA	1 cut(s)	538
TauI	GCSGC	7 cut(s)	134, 137, 140, 143, 172, 1181, 1734
TfiI	GAWTC	7 cut(s)	92, 226, 412, 1457, 1511, 1568, 1667
Tru1I	TTAA	8 cut(s)	666, 828, 846, 933, 1005, 1587, 1932, 2103
Tru9I	TTAA	8 cut(s)	666, 828, 846, 933, 1005, 1587, 1932, 2103
TscAI	CASTG	3 cut(s)	1160, 2080, 2095
TseFI	GTSAC	3 cut(s)	808, 1018, 2071
TseI	GCWGC	5 cut(s)	166, 247, 1181, 1210, 1925
Tsp45I	GTSAC	3 cut(s)	808, 1018, 2071
TspDTI	ATGAA	8 cut(s)	490, 494, 584, 794, 1004, 1083, 1454, 1754
TspGWI	ACGGA	3 cut(s)	327, 1472, 1855
TspRI	CASTG	3 cut(s)	1160, 2080, 2095
VneI	GTGCAC	1 cut(s)	1869
VpaK11BI	GGWCC	2 cut(s)	178, 493
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	4 cut(s)	278, 1504, 1877, 1973
XbaI	TCTAGA	2 cut(s)	2116, 2150
XceI	RCATGY	3 cut(s)	1493, 1661, 2210
XcmI	CCANNNNNNNNNTGG	1 cut(s)	265
XhoI	CTCGAG	1 cut(s)	1952
XspI	CTAG	5 cut(s)	458, 1359, 1557, 2117, 2151
ZraI	GACGTC	1 cut(s)	2143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.