Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

34718423 .. 34720816

Gene Structure 2394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2226 bp

ATGCCATCAATGGCTTACATTTCTCTCTCCAAACCCTCCCAATGGCGACCCCGCTCCCTCACCCCCCTCCGCCTCTTCTGCTCCTCCACCGAATCCCCGACCCCCCAACCCGACCCGCAAAATGGATCCGCCGCCCCGACGGCCCCAAGACCCAGGGCGCCGCGTCGGGTCCGGAGCCCGGAAAAGCCCGAGGACATTATCTGCAGAATGATGGCGAATCGGGCCTGGACGACCCGGTTGCAGAACTCCATCCGCGATTTGGTTCCCGAATTCGACCACCATCTCGTCTGGAATGTCCTTCACGGAGCCAAGACCTCCGACCAAGCCCTCCAATTCTTCCGATGGGTCGAGCGTTCCAGGTTGTTTCAGCATGATAGGGAGACCCATTTGAAGATAATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTAGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTGATTGATAGTTATGGCAAGGCCGGCATTGTTCAGGAGTCGGTCAAGCTTTTCAATCAGATGAAGGAACTGGGCGTGGAGCGGAGTCTCAAGTCGTATGAGGCTCTGTTCAAGAGTATTTTGCGGAGGGGGCGGTATATGATGGGGAAGAGGTACTTTAATCATATGTTGGCTGAGGGAATAGAGCCGACTAGGCATACTTATAATATTATGATTTGGGGTTTCTTCTTGTCCTTGAGACTGGAGACTGCCAAGCGGTTTTTTGAGGACATGAAAAGTAGAGGAGTTAGTCCTGATGTTGTCACCTATAACACCATGATTAATGGGTATAATCGGTTTAAGCTGATGGATGAGGCCGAGCAGTTGTTTGTAGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATACTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGGTTCAGGCTGTTTCAAGAGATGAAGTCTTTTGGTATCAAGCCTAATGATGTCACCTTTTCGACTTTATTGCCAGGCCTTTGTGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAGTGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTTGAGAAATTGTTATATTGTCAGTGTAAGTCTGGAGATTTGGATGCGGCTGCTGATGTGCTCAAGGCAATGATTAGGCTGCACATTCCGACAGAAGCTGGTCATTATGGTATCCTTATTGAGAACTTTTGCAAGGCCGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGCTCATTGAGAAAGAAATTATTATGAGGCCCCAGACTACTTTGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGCATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTCTTCAGGCAGTTGATGAAAAAGGGTGTTCAGGATTCAGTTGCCTTCAATAATCTGATCCGTGGGCATGCCAAGGAGGGAAATTCTGATTCTGCGTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAAGATGGTAGGGTTCAAACGGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAATATGGATTTAGTTGCCAAGATCTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGAAGCGCTTGGACGGATTGATCTACTTATGCAAAGTGGGTGTGCACCTGAATTTGACAGCCTCTTATCTCTTCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTCGAGAGAGATTGCATGGTAGAATTTTCAAGCTATGATAAGGTGTTGGATGCTCTCTTAGCATCAGGAAAGACTCTAAATGCGTACTCAATTTTGTGTAAAATAATGGATAAAGGAGGGGTCACTGATTGGCGTAGCACTGACGATCTGATTAAGAGCCTCAATCTAGAGGGTAACACAAAACAAGCTGACGTCCTCTCTAGAAAGATAAAGGGAGGGGAGGCAAAAGCCAGTCAAAGTAAAATGGGGAAGAAACATGCAAGCCATGCAGGATTGGGTGCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

741

Amino Acids

83.68

Weight (kDa)

8.8

Isoelectric Point (pI)

40.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	198 - 241	1.2e-06	PPR repeat family
PPR_3	PF13812	220 - 276	5.2e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	233 - 276	2.4e-14	PPR repeat family
PPR_3	PF13812	253 - 312	8.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	260 - 291	4.3e-10	PPR repeat
PPR_2	PF13041	264 - 312	3.7e-16	PPR repeat family
PPR	PF01535	267 - 297	2.1e-07	PPR repeat
PPR_3	PF13812	288 - 343	7.4e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	295 - 328	3.3e-09	PPR repeat
PPR_2	PF13041	299 - 348	1e-17	PPR repeat family
PPR	PF01535	302 - 332	4.6e-08	PPR repeat
PPR_long	PF17177	317 - 436	5.9e-12	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	322 - 369	3.1e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	331 - 363	2.4e-07	PPR repeat
PPR_2	PF13041	483 - 528	1.7e-07	PPR repeat family
TPR_24	PF23276	494 - 610	2.9e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	702, 905
AatII	GACGTC	1 cut(s)	2136
AccB1I	GGYRCC	1 cut(s)	157
AccBSI	CCGCTC	2 cut(s)	54, 580
AccII	CGCG	3 cut(s)	163, 255, 1725
AccIII	TCCGGA	1 cut(s)	171
AclWI	GGATC	3 cut(s)	120, 133, 1465
AcsI	RAATTY	4 cut(s)	269, 1495, 1868, 1964
AcuI	CTGAAG	2 cut(s)	1402, 1428
AcyI	GRCGYC	2 cut(s)	158, 2133
AfaI	GTAC	2 cut(s)	653, 2027
AfeI	AGCGCT	1 cut(s)	1824
AfiI	CCNNNNNNNGG	5 cut(s)	42, 122, 178, 259, 464
AjnI	CCWGG	4 cut(s)	152, 224, 356, 1030
AloI	GAACNNNNNNTCC	2 cut(s)	944, 976
Alw21I	GWGCWC	2 cut(s)	1185, 1864
Alw26I	GTCTC	4 cut(s)	374, 590, 730, 737
Alw44I	GTGCAC	1 cut(s)	1860
AlwI	GGATC	3 cut(s)	120, 133, 1465
AlwNI	CAGNNNCTG	1 cut(s)	1220
Ama87I	CYCGRG	2 cut(s)	188, 1943
Aor13HI	TCCGGA	1 cut(s)	171
Aor51HI	AGCGCT	1 cut(s)	1824
AoxI	GGCC	8 cut(s)	141, 222, 409, 519, 852, 1033, 1257, 1322
ApaLI	GTGCAC	1 cut(s)	1860
ApeKI	GCWGC	3 cut(s)	1172, 1201, 1916
ApoI	RAATTY	4 cut(s)	269, 1495, 1868, 1964
AseI	ATTAAT	1 cut(s)	819
AspLEI	GCGC	2 cut(s)	160, 1825
AspS9I	GGNCC	6 cut(s)	142, 169, 222, 409, 484, 1323
AsuC2I	CCSGG	4 cut(s)	179, 235, 436, 1261
AsuHPI	GGTGA	4 cut(s)	52, 793, 1003, 1610
AsuII	TTCGAA	1 cut(s)	419
AvaI	CYCGRG	2 cut(s)	188, 1943
AvaII	GGWCC	2 cut(s)	169, 484
BaeGI	GKGCMC	1 cut(s)	1864
BamHI	GGATCC	1 cut(s)	125
BanI	GGYRCC	1 cut(s)	157
BanII	GRGCYC	1 cut(s)	179
Bbv12I	GWGCWC	2 cut(s)	1185, 1864
BbvCI	CCTCAGC	1 cut(s)	672
BbvI	GCAGC	3 cut(s)	1159, 1188, 1928
BceAI	ACGGC	2 cut(s)	156, 1731
BcgI	CGANNNNNNTGC	4 cut(s)	220, 254, 1009, 1043
BciT130I	CCWGG	4 cut(s)	154, 226, 358, 1032
BciVI	GTATCC	2 cut(s)	452, 1244
BcnI	CCSGG	4 cut(s)	179, 235, 436, 1261
BcoDI	GTCTC	4 cut(s)	374, 590, 730, 737
BfaI	CTAG	6 cut(s)	449, 690, 1350, 1548, 2108, 2142
BfmI	CTRYAG	1 cut(s)	202
BfoI	RGCGCY	2 cut(s)	161, 1826
BfuI	GTATCC	2 cut(s)	452, 1244
BglI	GCCNNNNNGGC	2 cut(s)	140, 691
BglII	AGATCT	1 cut(s)	1782
BisI	GCNGC	7 cut(s)	132, 161, 1170, 1173, 1202, 1723, 1917
BlsI	GCNGC	7 cut(s)	133, 162, 1171, 1174, 1203, 1724, 1918
Bme1390I	CCNGG	8 cut(s)	154, 179, 226, 235, 358, 436, 1032, 1261
Bme18I	GGWCC	2 cut(s)	169, 484
BmeT110I	CYCGRG	2 cut(s)	188, 1943
BmgT120I	GGNCC	6 cut(s)	142, 169, 222, 409, 484, 1323
BmiI	GGNNCC	9 cut(s)	127, 144, 159, 170, 176, 264, 307, 1325, 1545
BmrFI	CCNGG	8 cut(s)	154, 179, 226, 235, 358, 436, 1032, 1261
BmrI	ACTGGG	1 cut(s)	578
BmsI	GCATC	6 cut(s)	1033, 1156, 1384, 1600, 1981, 2012
BmuI	ACTGGG	1 cut(s)	578
BpmI	CTGGAG	2 cut(s)	761, 1176
Bpu10I	CCTNAGC	1 cut(s)	672
Bpu14I	TTCGAA	1 cut(s)	419
BpuEI	CTTGAG	3 cut(s)	572, 754, 1169
BpuMI	CCSGG	4 cut(s)	179, 235, 436, 1261
BsaHI	GRCGYC	2 cut(s)	158, 2133
BsaI	GGTCTC	1 cut(s)	374
BsaJI	CCNNGG	8 cut(s)	152, 153, 189, 1107, 1260, 1387, 1474, 1485
BsaWI	WCCGGW	1 cut(s)	171
Bsc4I	CCNNNNNNNGG	5 cut(s)	42, 122, 178, 259, 464
Bse118I	RCCGGY	1 cut(s)	521
Bse1I	ACTGG	3 cut(s)	573, 744, 2172
Bse3DI	GCAATG	3 cut(s)	479, 1197, 1911
BseAI	TCCGGA	1 cut(s)	171
BseBI	CCWGG	4 cut(s)	154, 226, 358, 1032
BseDI	CCNNGG	8 cut(s)	152, 153, 189, 1107, 1260, 1387, 1474, 1485
BseGI	GGATG	7 cut(s)	249, 484, 853, 958, 1063, 1171, 1996
BseLI	CCNNNNNNNGG	5 cut(s)	42, 122, 178, 259, 464
BseMI	GCAATG	3 cut(s)	479, 1197, 1911
BseMII	CTCAG	2 cut(s)	663, 1079
BseNI	ACTGG	3 cut(s)	573, 744, 2172
BseRI	GAGGAG	2 cut(s)	73, 795
BseSI	GKGCMC	1 cut(s)	1864
BseXI	GCAGC	3 cut(s)	1159, 1188, 1928
BsgI	GTGCAG	1 cut(s)	1187
Bsh1236I	CGCG	3 cut(s)	163, 255, 1725
BshFI	GGCC	8 cut(s)	143, 224, 411, 521, 854, 1035, 1259, 1324
BshNI	GGYRCC	1 cut(s)	157
BsiHKAI	GWGCWC	2 cut(s)	1185, 1864
BsiHKCI	CYCGRG	2 cut(s)	188, 1943
BsiSI	CCGG	6 cut(s)	172, 179, 235, 436, 522, 1260
BslI	CCNNNNNNNGG	5 cut(s)	42, 122, 178, 259, 464
BsmAI	GTCTC	4 cut(s)	374, 590, 730, 737
BsnI	GGCC	8 cut(s)	143, 224, 411, 521, 854, 1035, 1259, 1324
Bso31I	GGTCTC	1 cut(s)	374
BsoBI	CYCGRG	2 cut(s)	188, 1943
Bsp119I	TTCGAA	1 cut(s)	419
Bsp1286I	GDGCHC	3 cut(s)	179, 1185, 1864
Bsp13I	TCCGGA	1 cut(s)	171
Bsp143I	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
Bsp19I	CCATGG	1 cut(s)	1387
BspANI	GGCC	8 cut(s)	143, 224, 411, 521, 854, 1035, 1259, 1324
BspCNI	CTCAG	2 cut(s)	664, 1078
BspEI	TCCGGA	1 cut(s)	171
BspFNI	CGCG	3 cut(s)	163, 255, 1725
BspLI	GGNNCC	9 cut(s)	127, 144, 159, 170, 176, 264, 307, 1325, 1545
BspMAI	CTGCAG	1 cut(s)	206
BspPI	GGATC	3 cut(s)	120, 133, 1465
BspT104I	TTCGAA	1 cut(s)	419
BspT107I	GGYRCC	1 cut(s)	157
BspTNI	GGTCTC	1 cut(s)	374
BsrBI	CCGCTC	2 cut(s)	54, 580
BsrDI	GCAATG	3 cut(s)	479, 1197, 1911
BsrFI	RCCGGY	1 cut(s)	521
BsrI	ACTGG	3 cut(s)	573, 744, 2172
BssAI	RCCGGY	1 cut(s)	521
BssECI	CCNNGG	8 cut(s)	152, 153, 189, 1107, 1260, 1387, 1474, 1485
BssMI	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
BssNI	GRCGYC	2 cut(s)	158, 2133
BssT1I	CCWWGG	3 cut(s)	1107, 1387, 1485
Bst2UI	CCWGG	4 cut(s)	154, 226, 358, 1032
Bst4CI	ACNGT	1 cut(s)	1631
Bst6I	CTCTTC	7 cut(s)	80, 494, 641, 1421, 1531, 1727, 1893
BstACI	GRCGYC	2 cut(s)	158, 2133
BstAPI	GCANNNNNTGC	1 cut(s)	2207
BstBI	TTCGAA	1 cut(s)	419
BstC8I	GCNNGC	4 cut(s)	523, 1482, 1720, 2203
BstDEI	CTNAG	4 cut(s)	672, 1065, 1589, 1999
BstDSI	CCRYGG	2 cut(s)	1387, 1474
BstF5I	GGATG	7 cut(s)	249, 484, 853, 958, 1063, 1171, 1996
BstFNI	CGCG	3 cut(s)	163, 255, 1725
BstH2I	RGCGCY	2 cut(s)	161, 1826
BstHHI	GCGC	2 cut(s)	160, 1825
BstKTI	GATC	6 cut(s)	128, 1273, 1473, 1785, 1840, 2089
BstMAI	GTCTC	4 cut(s)	374, 590, 730, 737
BstMBI	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
BstNI	CCWGG	4 cut(s)	154, 226, 358, 1032
BstNSI	RCATGY	3 cut(s)	1484, 1652, 2201
BstSCI	CCNGG	8 cut(s)	152, 177, 224, 233, 356, 434, 1030, 1259
BstSFI	CTRYAG	1 cut(s)	202
BstSLI	GKGCMC	1 cut(s)	1864
BstUI	CGCG	3 cut(s)	163, 255, 1725
BstV1I	GCAGC	3 cut(s)	1159, 1188, 1928
BstX2I	RGATCY	2 cut(s)	125, 1782
BstXI	CCANNNNNNTGG	1 cut(s)	1786
BstYI	RGATCY	2 cut(s)	125, 1782
BsuI	GTATCC	2 cut(s)	452, 1244
BsuRI	GGCC	8 cut(s)	143, 224, 411, 521, 854, 1035, 1259, 1324
BtgI	CCRYGG	2 cut(s)	1387, 1474
BtsCI	GGATG	7 cut(s)	249, 484, 853, 958, 1063, 1171, 1996
BtsIMutI	CAGTG	3 cut(s)	1151, 2064, 2079
Cac8I	GCNNGC	4 cut(s)	523, 1482, 1720, 2203
CaiI	CAGNNNCTG	1 cut(s)	1220
CfoI	GCGC	2 cut(s)	160, 1825
Cfr10I	RCCGGY	1 cut(s)	521
Cfr13I	GGNCC	6 cut(s)	142, 169, 222, 409, 484, 1323
CseI	GACGC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	652, 2026
CviQI	GTAC	2 cut(s)	652, 2026
DdeI	CTNAG	4 cut(s)	672, 1065, 1589, 1999
DinI	GGCGCC	1 cut(s)	159
DpnI	GATC	6 cut(s)	127, 1272, 1472, 1784, 1839, 2088
DpnII	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
DraI	TTTAAA	1 cut(s)	1521
Eam1104I	CTCTTC	7 cut(s)	80, 494, 641, 1421, 1531, 1727, 1893
EarI	CTCTTC	7 cut(s)	80, 494, 641, 1421, 1531, 1727, 1893
EciI	GGCGGA	2 cut(s)	59, 118
Eco130I	CCWWGG	3 cut(s)	1107, 1387, 1485
Eco147I	AGGCCT	1 cut(s)	1035
Eco24I	GRGCYC	1 cut(s)	179
Eco31I	GGTCTC	1 cut(s)	374
Eco47I	GGWCC	2 cut(s)	169, 484
Eco47III	AGCGCT	1 cut(s)	1824
Eco57I	CTGAAG	2 cut(s)	1402, 1428
Eco88I	CYCGRG	2 cut(s)	188, 1943
EcoO109I	RGGNCCY	2 cut(s)	484, 1323
EcoRI	GAATTC	1 cut(s)	269
EcoRII	CCWGG	4 cut(s)	152, 224, 356, 1030
EcoT14I	CCWWGG	3 cut(s)	1107, 1387, 1485
EcoT38I	GRGCYC	1 cut(s)	179
EgeI	GGCGCC	1 cut(s)	159
EheI	GGCGCC	1 cut(s)	159
ErhI	CCWWGG	3 cut(s)	1107, 1387, 1485
FalI	AAGNNNNNCTT	2 cut(s)	638, 670
FauI	CCCGC	2 cut(s)	59, 123
FauNDI	CATATG	1 cut(s)	663
Fnu4HI	GCNGC	7 cut(s)	132, 161, 1170, 1173, 1202, 1723, 1917
FokI	GGATG	7 cut(s)	236, 491, 860, 965, 1070, 1178, 2003
FriOI	GRGCYC	1 cut(s)	179
Fsp4HI	GCNGC	7 cut(s)	132, 161, 1170, 1173, 1202, 1723, 1917
FspBI	CTAG	6 cut(s)	449, 690, 1350, 1548, 2108, 2142
GlaI	GCGC	2 cut(s)	159, 1824
GluI	GCNGC	7 cut(s)	132, 161, 1170, 1173, 1202, 1723, 1917
GsuI	CTGGAG	2 cut(s)	761, 1176
HaeII	RGCGCY	2 cut(s)	161, 1826
HaeIII	GGCC	8 cut(s)	143, 224, 411, 521, 854, 1035, 1259, 1324
HapII	CCGG	6 cut(s)	172, 179, 235, 436, 522, 1260
HgaI	GACGC	1 cut(s)	152
HhaI	GCGC	2 cut(s)	160, 1825
Hin1I	GRCGYC	2 cut(s)	158, 2133
Hin6I	GCGC	2 cut(s)	158, 1823
HinP1I	GCGC	2 cut(s)	158, 1823
HindIII	AAGCTT	1 cut(s)	545
HpaII	CCGG	6 cut(s)	172, 179, 235, 436, 522, 1260
HphI	GGTGA	4 cut(s)	52, 793, 1003, 1610
Hpy166II	GTNNAC	3 cut(s)	1282, 1601, 1862
Hpy8I	GTNNAC	3 cut(s)	1282, 1601, 1862
Hpy99I	CGWCG	2 cut(s)	142, 168
HpyAV	CCTTC	6 cut(s)	308, 457, 556, 871, 1468, 1741
HpyCH4III	ACNGT	1 cut(s)	1631
HpyCH4IV	ACGT	1 cut(s)	2133
HpyF3I	CTNAG	4 cut(s)	672, 1065, 1589, 1999
HpySE526I	ACGT	1 cut(s)	2133
Hsp92I	GRCGYC	2 cut(s)	158, 2133
HspAI	GCGC	2 cut(s)	158, 1823
KasI	GGCGCC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	171
KroI	GCCGGC	1 cut(s)	521
KroNI	GCCGGC	1 cut(s)	523
Kzo9I	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
LmnI	GCTCC	6 cut(s)	59, 86, 174, 305, 577, 1108
Lsp1109I	GCAGC	3 cut(s)	1159, 1188, 1928
LweI	GCATC	6 cut(s)	1033, 1156, 1384, 1600, 1981, 2012
MaeI	CTAG	6 cut(s)	449, 690, 1350, 1548, 2108, 2142
MaeII	ACGT	1 cut(s)	2133
MaeIII	GTNAC	4 cut(s)	799, 1009, 2062, 2114
MalI	GATC	6 cut(s)	127, 1272, 1472, 1784, 1839, 2088
MbiI	CCGCTC	2 cut(s)	54, 580
MboI	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
MflI	RGATCY	2 cut(s)	125, 1782
MhlI	GDGCHC	3 cut(s)	179, 1185, 1864
Mly113I	GGCGCC	1 cut(s)	158
MlyI	GAGTC	4 cut(s)	545, 592, 1696, 2008
MmeI	TCCRAC	3 cut(s)	342, 1235, 1968
MroI	TCCGGA	1 cut(s)	171
MroNI	GCCGGC	1 cut(s)	521
MseI	TTAA	8 cut(s)	657, 819, 837, 924, 1520, 1578, 1923, 2094
MspA1I	CMGCKG	2 cut(s)	1607, 1919
MspI	CCGG	6 cut(s)	172, 179, 235, 436, 522, 1260
MspR9I	CCNGG	8 cut(s)	154, 179, 226, 235, 358, 436, 1032, 1261
MvaI	CCWGG	4 cut(s)	154, 226, 358, 1032
MvnI	CGCG	3 cut(s)	163, 255, 1725
NaeI	GCCGGC	1 cut(s)	523
NarI	GGCGCC	1 cut(s)	158
NciI	CCSGG	4 cut(s)	179, 235, 436, 1261
NcoI	CCATGG	1 cut(s)	1387
NdeI	CATATG	1 cut(s)	663
NdeII	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
NgoMIV	GCCGGC	1 cut(s)	521
NlaIV	GGNNCC	9 cut(s)	127, 144, 159, 170, 176, 264, 307, 1325, 1545
NmeAIII	GCCGAG	2 cut(s)	437, 880
NmuCI	GTSAC	3 cut(s)	799, 1009, 2062
NspI	RCATGY	3 cut(s)	1484, 1652, 2201
NspV	TTCGAA	1 cut(s)	419
PaeI	GCATGC	1 cut(s)	1484
PaeR7I	CTCGAG	1 cut(s)	1943
PasI	CCCWGGG	1 cut(s)	153
PceI	AGGCCT	1 cut(s)	1035
PdiI	GCCGGC	1 cut(s)	523
PfeI	GAWTC	7 cut(s)	92, 217, 403, 1448, 1502, 1559, 1658
PkrI	GCNGC	7 cut(s)	133, 162, 1171, 1174, 1203, 1724, 1918
PleI	GAGTC	4 cut(s)	544, 591, 1695, 2008
PluTI	GGCGCC	1 cut(s)	161
PpsI	GAGTC	4 cut(s)	544, 591, 1695, 2008
PpuMI	RGGWCCY	1 cut(s)	484
PshBI	ATTAAT	1 cut(s)	819
PsiI	TTATAA	2 cut(s)	702, 905
Psp5II	RGGWCCY	1 cut(s)	484
Psp6I	CCWGG	4 cut(s)	152, 224, 356, 1030
PspGI	CCWGG	4 cut(s)	152, 224, 356, 1030
PspN4I	GGNNCC	9 cut(s)	127, 144, 159, 170, 176, 264, 307, 1325, 1545
PspPI	GGNCC	6 cut(s)	142, 169, 222, 409, 484, 1323
PspPPI	RGGWCCY	1 cut(s)	484
PstI	CTGCAG	1 cut(s)	206
PstNI	CAGNNNCTG	1 cut(s)	1220
PsuI	RGATCY	2 cut(s)	125, 1782
PvuII	CAGCTG	2 cut(s)	1607, 1919
RsaI	GTAC	2 cut(s)	653, 2027
RsaNI	GTAC	2 cut(s)	652, 2026
SaqAI	TTAA	8 cut(s)	657, 819, 837, 924, 1520, 1578, 1923, 2094
SatI	GCNGC	7 cut(s)	132, 161, 1170, 1173, 1202, 1723, 1917
Sau3AI	GATC	6 cut(s)	125, 1270, 1470, 1782, 1837, 2086
Sau96I	GGNCC	6 cut(s)	142, 169, 222, 409, 484, 1323
SchI	GAGTC	4 cut(s)	545, 592, 1696, 2008
ScrFI	CCNGG	8 cut(s)	154, 179, 226, 235, 358, 436, 1032, 1261
SduI	GDGCHC	3 cut(s)	179, 1185, 1864
SfaNI	GCATC	6 cut(s)	1033, 1156, 1384, 1600, 1981, 2012
SfcI	CTRYAG	1 cut(s)	202
SfoI	GGCGCC	1 cut(s)	159
Sfr274I	CTCGAG	1 cut(s)	1943
SfuI	TTCGAA	1 cut(s)	419
SinI	GGWCC	2 cut(s)	169, 484
SlaI	CTCGAG	1 cut(s)	1943
SmlI	CTYRAG	4 cut(s)	587, 733, 1184, 1943
SmoI	CTYRAG	4 cut(s)	587, 733, 1184, 1943
SphI	GCATGC	1 cut(s)	1484
SseBI	AGGCCT	1 cut(s)	1035
SspDI	GGCGCC	1 cut(s)	157
SspI	AATATT	1 cut(s)	706
SspMI	CTAG	6 cut(s)	449, 690, 1350, 1548, 2108, 2142
StuI	AGGCCT	1 cut(s)	1035
StyD4I	CCNGG	8 cut(s)	152, 177, 224, 233, 356, 434, 1030, 1259
StyI	CCWWGG	3 cut(s)	1107, 1387, 1485
TaaI	ACNGT	1 cut(s)	1631
TaiI	ACGT	1 cut(s)	2136
TaqI	TCGA	6 cut(s)	273, 348, 419, 1019, 1273, 1944
TaqII	GACCGA	1 cut(s)	529
TauI	GCSGC	4 cut(s)	134, 163, 1172, 1725
TfiI	GAWTC	7 cut(s)	92, 217, 403, 1448, 1502, 1559, 1658
Tru1I	TTAA	8 cut(s)	657, 819, 837, 924, 1520, 1578, 1923, 2094
Tru9I	TTAA	8 cut(s)	657, 819, 837, 924, 1520, 1578, 1923, 2094
TscAI	CASTG	3 cut(s)	1151, 2071, 2086
TseFI	GTSAC	3 cut(s)	799, 1009, 2062
TseI	GCWGC	3 cut(s)	1172, 1201, 1916
Tsp45I	GTSAC	3 cut(s)	799, 1009, 2062
TspDTI	ATGAA	8 cut(s)	481, 485, 575, 785, 995, 1074, 1445, 1745
TspGWI	ACGGA	3 cut(s)	318, 1463, 1846
TspRI	CASTG	3 cut(s)	1151, 2071, 2086
VneI	GTGCAC	1 cut(s)	1860
VpaK11BI	GGWCC	2 cut(s)	169, 484
VspI	ATTAAT	1 cut(s)	819
XapI	RAATTY	4 cut(s)	269, 1495, 1868, 1964
XbaI	TCTAGA	2 cut(s)	2107, 2141
XceI	RCATGY	3 cut(s)	1484, 1652, 2201
XcmI	CCANNNNNNNNNTGG	1 cut(s)	256
XhoI	CTCGAG	1 cut(s)	1943
XspI	CTAG	6 cut(s)	449, 690, 1350, 1548, 2108, 2142
ZraI	GACGTC	1 cut(s)	2134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.