Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

56227911 .. 56251568

Gene Structure 23658 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG343600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2055 bp

ATGCTTACACATCATCTAAGTCAAAATAAGAGGGGGGTTGACGGGTTGTTAATTGTCAAAAATTCAGCCACCTTTTGTGAATACCGACCTCAAACCTCGACCTCTATGGGTCCCACCCGTCTTACATGGACGTCCGGTCCAATTCGGTTCGACCCGCTGGGACTGTTACGATTTACGACGTCGAGTTCGTTGCCCGGTAGAGGAGGCTTGGGTTTGACAGCGGATGCTGTCTTAATCAAAATTGATTGGAGGCAACGAAGAGGCTTGGCCGCTTGGCATGATAGGGACACCCATTTGAAGATTATTGAGATTCTGGGCCGAGCTTCGAAGCTCAACCATGCCCGGTGTATCCTACTGGATATGCCCAAGAAGGGTGTGCAATGGGATGAGGACCTCTTCATTCATCTTATTGATAGTTATGGAAAGGCCGGCATTGTTCAGGAGTCGGCTAAGCTTTTCAATCAGATGAAGGAATTGGGTGTGGAGCGAAGTCTCAAGTCGTATGAGGCTCTGTTTAATAGCATTTTGCGGAGGGGGCGGTATGTGATTGGGAAGAGGTACTTTAATCAGATGTTGGCTGAGGGAATAGAGCCCACTAGGCATACTTATAACATTATGATTTGGGGTTTCTTCTTGTCCTTGAGGTTGGAGACTGCAAAACCGTTTTTCGAGGACATGAAAAGTAGAGGAATTAATCCTGATGTTGTCACCTATAACACGATGATTAATGGGTACAATCGGTTTAAGCTGATGGATGAGGCCGAGCGGTTGTTTGTGGAGTTGAAGGGAAAGAATATACAGCCCAATGTTATAAGTTATAGTACCATGATTAAAGGGTATGTTTCTGTTGGGAGAGTGGATGATGGATTCAGGCTGTTTCAAGAGATGAAGTCTTTTGGTATTAAGCCTAATGATGTCACATTTTCGACTTTGTTGCCAGGGCTTTGCGATGCGGAGAAAAAGGATGAAGCTCAGAATATATTGAATGAGATGGTTGAGAGGCATATTGCTCCCAAGGATAATTCAATCTTCGAGAAATTGTTATATTGTCAGTGTAAGTCTGGGGATTTGGATGCGGCTGCCAATGTGCTCAAGGCAATGATTAGGCTGCACATTCTGACAGAGGCTGGTCATTACGGTATCCTTATTGAGAACTTCTGCAAGGCTGGGGTGTATGATCGAGCAGTTCACTTGCTTGATAAGGATGAAGCCCCAGAGTTCTATGGAATTCAGAAAGAAATTATTATGAGGCCCCAGAGTTCTATGGAATTGGAGGCTAGTGCTTACAACCCAATGATTGAGTATCTGTGCAACCATGGGCAGACAGGTAAAGCTGAAGTCCTTTTCAGGCAGTTGATGAAAAAGGGAGTTCAGGATTCAGTTGCCTTCAATAATTTGATTCGTGGGCATGCTAAGGAAGGAAATTCTGATTCTGCTTTTGAGATTTTAAAGATTATGGGTAGAAGAGGGGTTCCTAGAGAAGCAGATTCCTACAAGTTGCTCATTAAGAGCTACCTAAGTAAAGGTGAACCAGCTGATGCTAAAACAGCTTTGGACAGTATGATTGAAAATGGGCATGTTCCAGAATCATCACTATTCAGGTCAGTAATGGAGAGTCTATTTGAGGATGGTAGAGTTCAAACAGCAAGCCGCGTAATGAAGAGTATGGTAGAGAAGGGAGTGAATGAGAACATGGATTTAGTCGCCAAGGTTTTGGAAGCCCTCTTTATCAGAGGTCATGTTGAGGTAGCACTTGGACGGGTTGATCTACTTATGCAGAGTGGGTGTGCACCTGAGTTTGATAGCCTCTTATCTCTGCTTGCTGAAAAAGGAAAGACCATTGCAGCTGTTAAGCTATTAGATTTTTGCCTTGAGAGAGATTGCATGCCATATTACTACCAACCAAAGACAAAAGTGTATTTTCGTATACAAGAACCACTATCTCTGCTTACTAAAGGAATACTTACTACAAAAACTATTACATCAATGGAATCCAAGAATCAATTTAAAAAGTATAAAAAAGCAAAAGAATCACAACAACAAGAAGGCATCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

684

Amino Acids

77.44

Weight (kDa)

8.89

Isoelectric Point (pI)

33.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	167 - 210	1.1e-06	PPR repeat family
PPR_2	PF13041	206 - 245	8.8e-10	PPR repeat family
PPR_long	PF17177	216 - 312	8.8e-07	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	223 - 281	1.6e-11	Pentatricopeptide repeat domain
PPR_1	PF12854	229 - 260	4.7e-10	PPR repeat
PPR_2	PF13041	233 - 281	4.3e-16	PPR repeat family
PPR	PF01535	236 - 266	2.1e-07	PPR repeat
PPR_1	PF12854	264 - 297	4.2e-09	PPR repeat
PPR_2	PF13041	268 - 317	4.1e-17	PPR repeat family
PPR	PF01535	271 - 301	8.4e-08	PPR repeat
PPR_long	PF17177	286 - 401	9.9e-11	Pentacotripeptide-repeat region of PRORP
PPR_3	PF13812	291 - 338	2.2e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	300 - 332	7.9e-08	PPR repeat
PPR_2	PF13041	459 - 503	2.7e-07	PPR repeat family
TPR_24	PF23276	470 - 586	8.6e-08	Fungal tetratrico peptide repeats

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	609, 812
AatII	GACGTC	2 cut(s)	134, 182
AccBSI	CCGCTC	1 cut(s)	766
AccI	GTMKAC	1 cut(s)	1927
AccII	CGCG	1 cut(s)	1653
AciI	CCGC	9 cut(s)	155, 221, 270, 529, 538, 766, 953, 1076, 1651
AcoI	YGGCCR	1 cut(s)	267
AcsI	RAATTY	3 cut(s)	61, 1227, 1423
AcuI	CTGAAG	1 cut(s)	1356
AcyI	GRCGYC	2 cut(s)	131, 179
AfaI	GTAC	3 cut(s)	560, 734, 823
AfiI	CCNNNNNNNGG	2 cut(s)	200, 371
AgsI	TTSAA	9 cut(s)	298, 460, 784, 881, 985, 1026, 1390, 1568, 1640
AhdI	GACNNNNNGTC	1 cut(s)	135
AjnI	CCWGG	1 cut(s)	937
Alw21I	GWGCWC	2 cut(s)	1092, 1792
Alw26I	GTCTC	2 cut(s)	497, 644
Alw44I	GTGCAC	1 cut(s)	1788
AlwNI	CAGNNNCTG	1 cut(s)	1127
AoxI	GGCC	5 cut(s)	267, 316, 426, 759, 1250
ApaLI	GTGCAC	1 cut(s)	1788
ApeKI	GCWGC	3 cut(s)	1079, 1108, 1844
ApoI	RAATTY	3 cut(s)	61, 1227, 1423
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	2 cut(s)	693, 726
AspS9I	GGNCC	5 cut(s)	110, 137, 316, 391, 1251
AsuC2I	CCSGG	2 cut(s)	195, 343
AsuHPI	GGTGA	2 cut(s)	700, 1538
AsuII	TTCGAA	1 cut(s)	326
AvaII	GGWCC	3 cut(s)	110, 137, 391
BaeGI	GKGCMC	1 cut(s)	1792
BanII	GRGCYC	1 cut(s)	594
Bbv12I	GWGCWC	2 cut(s)	1092, 1792
BbvCI	CCTCAGC	1 cut(s)	579
BbvI	GCAGC	3 cut(s)	1066, 1095, 1856
BccI	CCATC	4 cut(s)	745, 857, 985, 1622
BcgI	CGANNNNNNTGC	4 cut(s)	172, 206, 916, 950
BciT130I	CCWGG	1 cut(s)	939
BciVI	GTATCC	2 cut(s)	359, 1151
BcnI	CCSGG	2 cut(s)	195, 343
BcoDI	GTCTC	2 cut(s)	497, 644
BfaI	CTAG	4 cut(s)	597, 1278, 1476, 2053
BfuI	GTATCC	2 cut(s)	359, 1151
BglI	GCCNNNNNGGC	1 cut(s)	598
BisI	GCNGC	6 cut(s)	270, 1077, 1080, 1109, 1651, 1845
BlpI	GCTNAGC	1 cut(s)	450
BlsI	GCNGC	6 cut(s)	271, 1078, 1081, 1110, 1652, 1846
Bme1390I	CCNGG	3 cut(s)	195, 343, 939
Bme18I	GGWCC	3 cut(s)	110, 137, 391
BmeRI	GACNNNNNGTC	1 cut(s)	135
BmgT120I	GGNCC	5 cut(s)	110, 137, 316, 391, 1251
BmiI	GGNNCC	4 cut(s)	111, 112, 1253, 1473
BmrFI	CCNGG	3 cut(s)	195, 343, 939
BmsI	GCATC	4 cut(s)	214, 940, 1063, 1528
Bpu10I	CCTNAGC	2 cut(s)	579, 1413
Bpu1102I	GCTNAGC	1 cut(s)	450
Bpu14I	TTCGAA	1 cut(s)	326
BpuEI	CTTGAG	4 cut(s)	479, 661, 1076, 1892
BpuMI	CCSGG	2 cut(s)	195, 343
BsaHI	GRCGYC	2 cut(s)	131, 179
BsaJI	CCNNGG	4 cut(s)	938, 1014, 1315, 1707
BsaWI	WCCGGW	1 cut(s)	134
Bsc4I	CCNNNNNNNGG	2 cut(s)	200, 371
Bse118I	RCCGGY	1 cut(s)	428
Bse1I	ACTGG	1 cut(s)	360
Bse3DI	GCAATG	3 cut(s)	386, 1104, 1839
BseBI	CCWGG	1 cut(s)	939
BseDI	CCNNGG	4 cut(s)	938, 1014, 1315, 1707
BseGI	GGATG	8 cut(s)	229, 391, 760, 865, 970, 1078, 1210, 1633
BseLI	CCNNNNNNNGG	2 cut(s)	200, 371
BseMI	GCAATG	3 cut(s)	386, 1104, 1839
BseMII	CTCAG	3 cut(s)	570, 986, 1785
BseNI	ACTGG	1 cut(s)	360
BseRI	GAGGAG	1 cut(s)	216
BseSI	GKGCMC	1 cut(s)	1792
BseXI	GCAGC	3 cut(s)	1066, 1095, 1856
BseYI	CCCAGC	2 cut(s)	157, 1166
BsgI	GTGCAG	1 cut(s)	1094
Bsh1236I	CGCG	1 cut(s)	1653
BshFI	GGCC	5 cut(s)	269, 318, 428, 761, 1252
BsiHKAI	GWGCWC	2 cut(s)	1092, 1792
BsiSI	CCGG	4 cut(s)	135, 195, 343, 429
BslFI	GGGAC	3 cut(s)	96, 174, 299
BslI	CCNNNNNNNGG	2 cut(s)	200, 371
BsmAI	GTCTC	2 cut(s)	497, 644
BsmFI	GGGAC	3 cut(s)	96, 174, 299
BsnI	GGCC	5 cut(s)	269, 318, 428, 761, 1252
Bsp119I	TTCGAA	1 cut(s)	326
Bsp1286I	GDGCHC	3 cut(s)	594, 1092, 1792
Bsp143I	GATC	2 cut(s)	1177, 1765
Bsp1720I	GCTNAGC	1 cut(s)	450
Bsp19I	CCATGG	1 cut(s)	1315
BspACI	CCGC	9 cut(s)	155, 221, 270, 529, 538, 766, 953, 1076, 1651
BspANI	GGCC	5 cut(s)	269, 318, 428, 761, 1252
BspCNI	CTCAG	3 cut(s)	571, 985, 1786
BspFNI	CGCG	1 cut(s)	1653
BspLI	GGNNCC	4 cut(s)	111, 112, 1253, 1473
BspT104I	TTCGAA	1 cut(s)	326
BsrBI	CCGCTC	1 cut(s)	766
BsrDI	GCAATG	3 cut(s)	386, 1104, 1839
BsrFI	RCCGGY	1 cut(s)	428
BsrI	ACTGG	1 cut(s)	360
BssAI	RCCGGY	1 cut(s)	428
BssECI	CCNNGG	4 cut(s)	938, 1014, 1315, 1707
BssMI	GATC	2 cut(s)	1177, 1765
BssNAI	GTATAC	1 cut(s)	1928
BssNI	GRCGYC	2 cut(s)	131, 179
BssT1I	CCWWGG	3 cut(s)	1014, 1315, 1707
Bst1107I	GTATAC	1 cut(s)	1928
Bst2UI	CCWGG	1 cut(s)	939
Bst4CI	ACNGT	4 cut(s)	165, 663, 1139, 1559
Bst6I	CTCTTC	5 cut(s)	253, 401, 548, 1459, 1655
BstACI	GRCGYC	2 cut(s)	131, 179
BstBI	TTCGAA	1 cut(s)	326
BstC8I	GCNNGC	5 cut(s)	430, 1410, 1648, 1821, 1886
BstDEI	CTNAG	7 cut(s)	17, 450, 579, 972, 1413, 1517, 1794
BstDSI	CCRYGG	1 cut(s)	1315
BstF5I	GGATG	8 cut(s)	229, 391, 760, 865, 970, 1078, 1210, 1633
BstFNI	CGCG	1 cut(s)	1653
BstKTI	GATC	2 cut(s)	1180, 1768
BstMAI	GTCTC	2 cut(s)	497, 644
BstMBI	GATC	2 cut(s)	1177, 1765
BstMWI	GCNNNNNNNGC	3 cut(s)	535, 598, 1547
BstNI	CCWGG	1 cut(s)	939
BstNSI	RCATGY	3 cut(s)	1412, 1580, 1888
BstSCI	CCNGG	3 cut(s)	193, 341, 937
BstSLI	GKGCMC	1 cut(s)	1792
BstUI	CGCG	1 cut(s)	1653
BstV1I	GCAGC	3 cut(s)	1066, 1095, 1856
BstXI	CCANNNNNNTGG	1 cut(s)	1714
BstZ17I	GTATAC	1 cut(s)	1928
BsuI	GTATCC	2 cut(s)	359, 1151
BsuRI	GGCC	5 cut(s)	269, 318, 428, 761, 1252
BtgI	CCRYGG	1 cut(s)	1315
BtgZI	GCGATG	1 cut(s)	963
BtsCI	GGATG	8 cut(s)	229, 391, 760, 865, 970, 1078, 1210, 1633
BtsIMutI	CAGTG	1 cut(s)	1058
Cac8I	GCNNGC	5 cut(s)	430, 1410, 1648, 1821, 1886
CaiI	CAGNNNCTG	1 cut(s)	1127
Cfr10I	RCCGGY	1 cut(s)	428
Cfr13I	GGNCC	5 cut(s)	110, 137, 316, 391, 1251
Csp6I	GTAC	3 cut(s)	559, 733, 822
CviQI	GTAC	3 cut(s)	559, 733, 822
DdeI	CTNAG	7 cut(s)	17, 450, 579, 972, 1413, 1517, 1794
DpnI	GATC	2 cut(s)	1179, 1767
DpnII	GATC	2 cut(s)	1177, 1765
DraI	TTTAAA	2 cut(s)	1449, 2008
DriI	GACNNNNNGTC	1 cut(s)	135
EaeI	YGGCCR	1 cut(s)	267
Eam1104I	CTCTTC	5 cut(s)	253, 401, 548, 1459, 1655
Eam1105I	GACNNNNNGTC	1 cut(s)	135
EarI	CTCTTC	5 cut(s)	253, 401, 548, 1459, 1655
Eco130I	CCWWGG	3 cut(s)	1014, 1315, 1707
Eco24I	GRGCYC	1 cut(s)	594
Eco47I	GGWCC	3 cut(s)	110, 137, 391
Eco57I	CTGAAG	1 cut(s)	1356
EcoO109I	RGGNCCY	3 cut(s)	110, 391, 1251
EcoRI	GAATTC	1 cut(s)	1227
EcoRII	CCWGG	1 cut(s)	937
EcoT14I	CCWWGG	3 cut(s)	1014, 1315, 1707
EcoT38I	GRGCYC	1 cut(s)	594
ErhI	CCWWGG	3 cut(s)	1014, 1315, 1707
FalI	AAGNNNNNCTT	4 cut(s)	545, 577, 1947, 1979
FaqI	GGGAC	3 cut(s)	96, 174, 299
FauI	CCCGC	1 cut(s)	162
FblI	GTMKAC	1 cut(s)	1927
Fnu4HI	GCNGC	6 cut(s)	270, 1077, 1080, 1109, 1651, 1845
FokI	GGATG	8 cut(s)	236, 398, 767, 872, 977, 1085, 1217, 1640
FriOI	GRGCYC	1 cut(s)	594
Fsp4HI	GCNGC	6 cut(s)	270, 1077, 1080, 1109, 1651, 1845
FspBI	CTAG	4 cut(s)	597, 1278, 1476, 2053
GluI	GCNGC	6 cut(s)	270, 1077, 1080, 1109, 1651, 1845
GsaI	CCCAGC	2 cut(s)	161, 1170
HaeIII	GGCC	5 cut(s)	269, 318, 428, 761, 1252
HapII	CCGG	4 cut(s)	135, 195, 343, 429
Hin1I	GRCGYC	2 cut(s)	131, 179
HincII	GTYRAC	1 cut(s)	40
HindII	GTYRAC	1 cut(s)	40
HindIII	AAGCTT	1 cut(s)	452
HpaII	CCGG	4 cut(s)	135, 195, 343, 429
HphI	GGTGA	2 cut(s)	700, 1538
Hpy166II	GTNNAC	5 cut(s)	40, 1189, 1529, 1790, 1928
Hpy188I	TCNGA	7 cut(s)	465, 570, 975, 1119, 1233, 1429, 1733
Hpy188III	TCNNGA	6 cut(s)	440, 698, 881, 1033, 1373, 1583
Hpy8I	GTNNAC	5 cut(s)	40, 1189, 1529, 1790, 1928
Hpy99I	CGWCG	2 cut(s)	181, 184
HpyAV	CCTTC	7 cut(s)	364, 463, 778, 1396, 1412, 1669, 2039
HpyCH4III	ACNGT	4 cut(s)	165, 663, 1139, 1559
HpyCH4IV	ACGT	2 cut(s)	131, 179
HpyCH4V	TGCA	9 cut(s)	379, 656, 1111, 1161, 1311, 1777, 1790, 1844, 1884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	535, 598, 1547
HpyF3I	CTNAG	7 cut(s)	17, 450, 579, 972, 1413, 1517, 1794
HpySE526I	ACGT	2 cut(s)	131, 179
Hsp92I	GRCGYC	2 cut(s)	131, 179
KflI	GGGWCCC	1 cut(s)	110
KroI	GCCGGC	1 cut(s)	428
KroNI	GCCGGC	1 cut(s)	430
Kzo9I	GATC	2 cut(s)	1177, 1765
LmnI	GCTCC	2 cut(s)	484, 1015
Lsp1109I	GCAGC	3 cut(s)	1066, 1095, 1856
LweI	GCATC	4 cut(s)	214, 940, 1063, 1528
MaeI	CTAG	4 cut(s)	597, 1278, 1476, 2053
MaeII	ACGT	2 cut(s)	131, 179
MaeIII	GTNAC	3 cut(s)	165, 706, 916
MalI	GATC	2 cut(s)	1179, 1767
MbiI	CCGCTC	1 cut(s)	766
MboI	GATC	2 cut(s)	1177, 1765
MboII	GAAGA	8 cut(s)	270, 310, 388, 565, 622, 1021, 1476, 1672
MhlI	GDGCHC	3 cut(s)	594, 1092, 1792
MlyI	GAGTC	2 cut(s)	452, 1624
MmeI	TCCRAC	1 cut(s)	627
MroNI	GCCGGC	1 cut(s)	428
MspA1I	CMGCKG	4 cut(s)	157, 221, 1535, 1847
MspI	CCGG	4 cut(s)	135, 195, 343, 429
MspR9I	CCNGG	3 cut(s)	195, 343, 939
MvaI	CCWGG	1 cut(s)	939
MvnI	CGCG	1 cut(s)	1653
MwoI	GCNNNNNNNGC	3 cut(s)	535, 598, 1547
NaeI	GCCGGC	1 cut(s)	430
NciI	CCSGG	2 cut(s)	195, 343
NcoI	CCATGG	1 cut(s)	1315
NdeII	GATC	2 cut(s)	1177, 1765
NgoMIV	GCCGGC	1 cut(s)	428
NlaIV	GGNNCC	4 cut(s)	111, 112, 1253, 1473
NmeAIII	GCCGAG	2 cut(s)	344, 787
NmuCI	GTSAC	2 cut(s)	706, 916
NspI	RCATGY	3 cut(s)	1412, 1580, 1888
NspV	TTCGAA	1 cut(s)	326
PaeI	GCATGC	2 cut(s)	1412, 1888
PcsI	WCGNNNNNNNCGW	1 cut(s)	185
PdiI	GCCGGC	1 cut(s)	430
PkrI	GCNGC	6 cut(s)	271, 1078, 1081, 1110, 1652, 1846
PleI	GAGTC	2 cut(s)	451, 1623
PpsI	GAGTC	2 cut(s)	451, 1623
PpuMI	RGGWCCY	2 cut(s)	110, 391
PshBI	ATTAAT	2 cut(s)	693, 726
PsiI	TTATAA	2 cut(s)	609, 812
Psp5II	RGGWCCY	2 cut(s)	110, 391
Psp6I	CCWGG	1 cut(s)	937
PspFI	CCCAGC	2 cut(s)	157, 1166
PspGI	CCWGG	1 cut(s)	937
PspN4I	GGNNCC	4 cut(s)	111, 112, 1253, 1473
PspPI	GGNCC	5 cut(s)	110, 137, 316, 391, 1251
PspPPI	RGGWCCY	2 cut(s)	110, 391
PstNI	CAGNNNCTG	1 cut(s)	1127
PvuII	CAGCTG	2 cut(s)	1535, 1847
RsaI	GTAC	3 cut(s)	560, 734, 823
RsaNI	GTAC	3 cut(s)	559, 733, 822
SatI	GCNGC	6 cut(s)	270, 1077, 1080, 1109, 1651, 1845
Sau3AI	GATC	2 cut(s)	1177, 1765
Sau96I	GGNCC	5 cut(s)	110, 137, 316, 391, 1251
SchI	GAGTC	2 cut(s)	452, 1624
ScrFI	CCNGG	3 cut(s)	195, 343, 939
SduI	GDGCHC	3 cut(s)	594, 1092, 1792
SfaNI	GCATC	4 cut(s)	214, 940, 1063, 1528
SfuI	TTCGAA	1 cut(s)	326
SinI	GGWCC	3 cut(s)	110, 137, 391
SmlI	CTYRAG	4 cut(s)	494, 640, 1091, 1871
SmoI	CTYRAG	4 cut(s)	494, 640, 1091, 1871
SphI	GCATGC	2 cut(s)	1412, 1888
SsiI	CCGC	9 cut(s)	155, 221, 270, 529, 538, 766, 953, 1076, 1651
SspMI	CTAG	4 cut(s)	597, 1278, 1476, 2053
StyD4I	CCNGG	3 cut(s)	193, 341, 937
StyI	CCWWGG	3 cut(s)	1014, 1315, 1707
TaaI	ACNGT	4 cut(s)	165, 663, 1139, 1559
TaiI	ACGT	2 cut(s)	134, 182
TaqI	TCGA	8 cut(s)	98, 150, 182, 326, 669, 926, 1032, 1180
TauI	GCSGC	3 cut(s)	272, 1079, 1653
TscAI	CASTG	1 cut(s)	1058
TseFI	GTSAC	2 cut(s)	706, 916
TseI	GCWGC	3 cut(s)	1079, 1108, 1844
Tsp45I	GTSAC	2 cut(s)	706, 916
TspDTI	ATGAA	9 cut(s)	388, 392, 482, 692, 902, 981, 1221, 1373, 1673
TspRI	CASTG	1 cut(s)	1058
VneI	GTGCAC	1 cut(s)	1788
VpaK11BI	GGWCC	3 cut(s)	110, 137, 391
VspI	ATTAAT	2 cut(s)	693, 726
XapI	RAATTY	3 cut(s)	61, 1227, 1423
XceI	RCATGY	3 cut(s)	1412, 1580, 1888
XmiI	GTMKAC	1 cut(s)	1927
XspI	CTAG	4 cut(s)	597, 1278, 1476, 2053
ZraI	GACGTC	2 cut(s)	132, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.