Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Forward (+)

11552368 .. 11553571

Gene Structure 1204 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0086200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1092 bp

ATGGACAGGCAATTGTATCTGGCAGATATCCTTGGGGTGCAAAGGGTGGATAAACATGAGAAGTATCTTGGCTTGCCTACCCATGTTGGAAGATCAAAGACAGCTGCATTTGCTTACTTGAAAGAGAAACTTACAAAGAAAGTCGTCAGCTGGAGAGCCAAATTATTAAGCAATGCAGGTAAAGAAATTCTAATTAAAGTTGTTGCTCAAACTGTTCCAATATCTTGGGAAAGGTTATGTGTTCCTAAGAAGGAGGGTGGTATGGGCTTTAAGAACTTCCATTGGTTTAATAAGGCTATGTTGGCTAAACAAAGTTGGCGGTTGCTACAGAATCCAAATTCATTGATAGTTAGATTGTATAAAGCTATTTATTTTCCTAATGGTGAGTATCTCACAGTTGGTTTAGGGGATACACCCTCATTTTCATGGAGGAGCATTGTGGAAGCTAGGCAGGTGTTAGTACAAGGCCTCAGATGGCAGGTTGGGAATGGTGAGCGTATTGAGATATGGAATCATAATTGGATTCCAGATGTGTACCCCAGAGGGCTGTCTTCACCTCCTCCGTATGATGCACCCCGTTTTGTTGAGGAGCTTATTGACCCAATTACTCGGAGTTGGGATGTAAATCTACTTGCCAGGTACTTTACCCAAACTAATATTGATTTGATATTGAGCATTCCATTGACAAGGCATGCACAGAGTGATAGACAAATTTGGCATTTTCACAAGAAGGGTTTCTTTACTACAAATAGTGCATACTTTGTTGCTCGTGATTTGGCTTTGGGTTTAATTTTAGCCCCCCCACCACCTGTTGATTCTTATAAGGCAGTGTGGAAGGCAATATGGGATGCTAAAGTACCTAGCAAGGTAGCTTTACATGCATGGAAGACATCGGTTAATATTCTTCCTACACGGGTGGGATTGAGTACTAAAGGCTATAATGGAGAGATGAGGTGTTTATTGTGTCCTCATACTTTGGAAAATAGTTTGCATGTTTTTGTTGATTGTCCATATGCACAGGAAGTTTGGCATAGAGATGCCTACTGGGCCGAGCGACAATTTTATAGATTGGTTTTTGGGTGCAATCAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

363

Amino Acids

41.89

Weight (kDa)

9.64

Isoelectric Point (pI)

34.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-RVT	PF13966	276 - 343	6.3e-15	zinc-binding in reverse transcriptase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	822
AarI	CACCTGC	1 cut(s)	442
Acc36I	ACCTGC	3 cut(s)	167, 442, 469
AciI	CCGC	1 cut(s)	319
AcsI	RAATTY	3 cut(s)	186, 337, 711
AdeI	CACNNNGTG	1 cut(s)	701
AfaI	GTAC	5 cut(s)	462, 536, 641, 858, 928
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	635
AluBI	AGCT	6 cut(s)	104, 150, 365, 446, 592, 872
AluI	AGCT	6 cut(s)	104, 150, 365, 446, 592, 872
AoxI	GGCC	2 cut(s)	466, 1047
ApeKI	GCWGC	1 cut(s)	104
ApoI	RAATTY	3 cut(s)	186, 337, 711
Asp700I	GAANNNNTTC	1 cut(s)	734
AspS9I	GGNCC	1 cut(s)	1047
AsuHPI	GGTGA	3 cut(s)	395, 503, 546
BauI	CACGAG	1 cut(s)	768
BbsI	GAAGAC	2 cut(s)	543, 893
BbvI	GCAGC	1 cut(s)	91
BccI	CCATC	1 cut(s)	468
BciT130I	CCWGG	1 cut(s)	637
BciVI	GTATCC	1 cut(s)	403
BfaI	CTAG	2 cut(s)	447, 861
BfmI	CTRYAG	1 cut(s)	326
BfuAI	ACCTGC	3 cut(s)	167, 442, 469
BfuI	GTATCC	1 cut(s)	403
BglI	GCCNNNNNGGC	1 cut(s)	1046
BisI	GCNGC	1 cut(s)	105
BlsI	GCNGC	1 cut(s)	106
BmcAI	AGTACT	1 cut(s)	928
Bme1390I	CCNGG	1 cut(s)	637
BmgT120I	GGNCC	1 cut(s)	1047
BmrFI	CCNGG	1 cut(s)	637
BmrI	ACTGGG	1 cut(s)	1054
BmsI	GCATC	3 cut(s)	559, 838, 1027
BmuI	ACTGGG	1 cut(s)	1054
BpiI	GAAGAC	2 cut(s)	543, 893
BpmI	CTGGAG	1 cut(s)	172
BsaBI	GATNNNNATC	1 cut(s)	624
BsaJI	CCNNGG	1 cut(s)	31
Bse1I	ACTGG	1 cut(s)	1049
Bse3DI	GCAATG	1 cut(s)	178
Bse8I	GATNNNNATC	1 cut(s)	624
BseBI	CCWGG	1 cut(s)	637
BseDI	CCNNGG	1 cut(s)	31
BseGI	GGATG	2 cut(s)	625, 853
BseJI	GATNNNNATC	1 cut(s)	624
BseMI	GCAATG	1 cut(s)	178
BseMII	CTCAG	1 cut(s)	484
BseNI	ACTGG	1 cut(s)	1049
BseRI	GAGGAG	3 cut(s)	445, 549, 602
BseXI	GCAGC	1 cut(s)	91
BshFI	GGCC	2 cut(s)	468, 1049
BsmI	GAATGC	1 cut(s)	675
BsnI	GGCC	2 cut(s)	468, 1049
Bsp143I	GATC	1 cut(s)	92
BspACI	CCGC	1 cut(s)	319
BspANI	GGCC	2 cut(s)	468, 1049
BspCNI	CTCAG	1 cut(s)	483
BspMI	ACCTGC	3 cut(s)	167, 442, 469
BsrDI	GCAATG	1 cut(s)	178
BsrI	ACTGG	1 cut(s)	1049
BssECI	CCNNGG	1 cut(s)	31
BssMI	GATC	1 cut(s)	92
BssSI	CACGAG	1 cut(s)	768
BssT1I	CCWWGG	1 cut(s)	31
Bst2BI	CACGAG	1 cut(s)	768
Bst2UI	CCWGG	1 cut(s)	637
Bst4CI	ACNGT	2 cut(s)	214, 397
BstC8I	GCNNGC	2 cut(s)	74, 693
BstDEI	CTNAG	2 cut(s)	246, 470
BstF5I	GGATG	2 cut(s)	625, 853
BstKTI	GATC	1 cut(s)	95
BstMBI	GATC	1 cut(s)	92
BstMWI	GCNNNNNNNGC	4 cut(s)	110, 302, 878, 1046
BstNI	CCWGG	1 cut(s)	637
BstNSI	RCATGY	3 cut(s)	695, 881, 995
BstSCI	CCNGG	1 cut(s)	635
BstSFI	CTRYAG	1 cut(s)	326
BstV1I	GCAGC	1 cut(s)	91
BstV2I	GAAGAC	2 cut(s)	543, 893
BstXI	CCANNNNNNTGG	1 cut(s)	225
BsuI	GTATCC	1 cut(s)	403
BsuRI	GGCC	2 cut(s)	468, 1049
BtsCI	GGATG	2 cut(s)	625, 853
BtsI	GCAGTG	1 cut(s)	834
BtsIMutI	CAGTG	1 cut(s)	834
BveI	ACCTGC	3 cut(s)	167, 442, 469
Cac8I	GCNNGC	2 cut(s)	74, 693
Cfr13I	GGNCC	1 cut(s)	1047
Csp6I	GTAC	5 cut(s)	461, 535, 640, 857, 927
CviAII	CATG	7 cut(s)	56, 83, 426, 692, 878, 882, 992
CviQI	GTAC	5 cut(s)	461, 535, 640, 857, 927
DdeI	CTNAG	2 cut(s)	246, 470
DpnI	GATC	1 cut(s)	94
DpnII	GATC	1 cut(s)	92
DraIII	CACNNNGTG	1 cut(s)	701
Eco130I	CCWWGG	1 cut(s)	31
Eco147I	AGGCCT	1 cut(s)	468
Eco32I	GATATC	1 cut(s)	28
EcoRII	CCWGG	1 cut(s)	635
EcoRV	GATATC	1 cut(s)	28
EcoT14I	CCWWGG	1 cut(s)	31
EcoT22I	ATGCAT	1 cut(s)	883
ErhI	CCWWGG	1 cut(s)	31
FaeI	CATG	7 cut(s)	59, 86, 429, 695, 881, 885, 995
FalI	AAGNNNNNCTT	4 cut(s)	114, 146, 722, 754
FatI	CATG	7 cut(s)	55, 82, 425, 691, 877, 881, 991
FauNDI	CATATG	1 cut(s)	1012
Fnu4HI	GCNGC	1 cut(s)	105
FokI	GGATG	2 cut(s)	632, 860
Fsp4HI	GCNGC	1 cut(s)	105
FspBI	CTAG	2 cut(s)	447, 861
GluI	GCNGC	1 cut(s)	105
GsuI	CTGGAG	1 cut(s)	172
HaeIII	GGCC	2 cut(s)	468, 1049
Hin1II	CATG	7 cut(s)	59, 86, 429, 695, 881, 885, 995
HinfI	GANTC	4 cut(s)	331, 511, 523, 815
HphI	GGTGA	3 cut(s)	395, 503, 546
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	2 cut(s)	473, 612
Hpy188III	TCNNGA	2 cut(s)	527, 770
Hpy8I	GTNNAC	1 cut(s)	535
HpyAV	CCTTC	3 cut(s)	244, 724, 829
HpyCH4III	ACNGT	2 cut(s)	214, 397
HpyF10VI	GCNNNNNNNGC	4 cut(s)	110, 302, 878, 1046
HpyF3I	CTNAG	2 cut(s)	246, 470
Hsp92II	CATG	7 cut(s)	59, 86, 429, 695, 881, 885, 995
Kzo9I	GATC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	432, 589
Lsp1109I	GCAGC	1 cut(s)	91
LweI	GCATC	3 cut(s)	559, 838, 1027
MaeI	CTAG	2 cut(s)	447, 861
MalI	GATC	1 cut(s)	94
MboI	GATC	1 cut(s)	92
MboII	GAAGA	4 cut(s)	102, 543, 896, 898
MfeI	CAATTG	1 cut(s)	11
MmeI	TCCRAC	1 cut(s)	67
Mph1103I	ATGCAT	1 cut(s)	883
MroXI	GAANNNNTTC	1 cut(s)	734
MseI	TTAA	6 cut(s)	167, 195, 270, 288, 788, 897
MslI	CAYNNNNRTG	2 cut(s)	424, 1035
MspA1I	CMGCKG	2 cut(s)	104, 150
MspR9I	CCNGG	1 cut(s)	637
MunI	CAATTG	1 cut(s)	11
Mva1269I	GAATGC	1 cut(s)	675
MvaI	CCWGG	1 cut(s)	637
MwoI	GCNNNNNNNGC	4 cut(s)	110, 302, 878, 1046
NdeI	CATATG	1 cut(s)	1012
NdeII	GATC	1 cut(s)	92
NlaIII	CATG	7 cut(s)	59, 86, 429, 695, 881, 885, 995
NmeAIII	GCCGAG	1 cut(s)	1075
NsiI	ATGCAT	1 cut(s)	883
NspI	RCATGY	3 cut(s)	695, 881, 995
PaeI	GCATGC	1 cut(s)	695
PaqCI	CACCTGC	1 cut(s)	442
PceI	AGGCCT	1 cut(s)	468
PctI	GAATGC	1 cut(s)	675
PdmI	GAANNNNTTC	1 cut(s)	734
PfeI	GAWTC	4 cut(s)	331, 511, 523, 815
PkrI	GCNGC	1 cut(s)	106
PsiI	TTATAA	1 cut(s)	822
Psp6I	CCWGG	1 cut(s)	635
PspGI	CCWGG	1 cut(s)	635
PspPI	GGNCC	1 cut(s)	1047
PvuII	CAGCTG	2 cut(s)	104, 150
RsaI	GTAC	5 cut(s)	462, 536, 641, 858, 928
RsaNI	GTAC	5 cut(s)	461, 535, 640, 857, 927
RseI	CAYNNNNRTG	2 cut(s)	424, 1035
SaqAI	TTAA	6 cut(s)	167, 195, 270, 288, 788, 897
SatI	GCNGC	1 cut(s)	105
Sau3AI	GATC	1 cut(s)	92
Sau96I	GGNCC	1 cut(s)	1047
ScaI	AGTACT	1 cut(s)	928
ScrFI	CCNGG	1 cut(s)	637
SfaNI	GCATC	3 cut(s)	559, 838, 1027
SfcI	CTRYAG	1 cut(s)	326
SmiMI	CAYNNNNRTG	2 cut(s)	424, 1035
SphI	GCATGC	1 cut(s)	695
SseBI	AGGCCT	1 cut(s)	468
SsiI	CCGC	1 cut(s)	319
SspI	AATATT	2 cut(s)	658, 901
SspMI	CTAG	2 cut(s)	447, 861
StuI	AGGCCT	1 cut(s)	468
StyD4I	CCNGG	1 cut(s)	635
StyI	CCWWGG	1 cut(s)	31
TaaI	ACNGT	2 cut(s)	214, 397
TatI	WGTACW	2 cut(s)	460, 926
TfiI	GAWTC	4 cut(s)	331, 511, 523, 815
Tru1I	TTAA	6 cut(s)	167, 195, 270, 288, 788, 897
Tru9I	TTAA	6 cut(s)	167, 195, 270, 288, 788, 897
TscAI	CASTG	1 cut(s)	834
TseI	GCWGC	1 cut(s)	104
TspDTI	ATGAA	2 cut(s)	330, 414
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	834
XapI	RAATTY	3 cut(s)	186, 337, 711
XceI	RCATGY	3 cut(s)	695, 881, 995
XmnI	GAANNNNTTC	1 cut(s)	734
XspI	CTAG	2 cut(s)	447, 861
ZrmI	AGTACT	1 cut(s)	928
Zsp2I	ATGCAT	1 cut(s)	883

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.