Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8266267.1

Orthogroup ID

OG0006745

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 770

Gene Structure 770 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8266267.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 755 bp

atgattaaagggtatgtttctgttgggagagtggatgatgggttcaggctgtttcaagagatgaagtcttttggtatcaagcctaatgatgtcaccttttcgactttattgccaggcctttgtgatgcggagaaaaaggatgaagctcagaatatattgagtgagatggttgagaggcatattgctcccaaggataattcaatctttgagaaattgttatattgtcagtgtaagtctggagatttggatgcggctgctgatgtgctcaaggcaatgattaggctgcacattccgacagaagctggtcattatggtatccttattgagaacttttgcaaggccggggtgtatgatcgagcagttcacttgcttgataagctcattgagaaagaaattattatgaggccccagactactttggaattggaggctagtgcttacaacccaatgattgagcatctgtgcaaccatgggcacacaggtaaagctgaagtcctcttcaggcagttgatgaaaaagggtgttcaggattcagttgccttcaataatctgatccgtgggcatgccaaggagggaaattctgattctgcgtttgagattttaaagattatgggtagaagaggggttcctagagaagcagattcctacaagttgctcattaagagctacctaagtaaaggtgaaccagctgatgctaaaacagctttggacagtatgattgaaaatgggcatgttccagaatcatcactattcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009507 GO:0009534 GO:0009535 GO:0009536 GO:0009579 GO:0009628 GO:0009987 GO:0016020 GO:0016070 GO:0016787 GO:0016788 GO:0031976 GO:0031984 GO:0034357 GO:0034641 GO:0042651 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0050896 GO:0055035 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

251

Amino Acids

28.0

Weight (kDa)

6.15

Isoelectric Point (pI)

33.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006745)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G37230
fragaria_vesca	FvH4_5g34800
malus_domestica	MD08G1198800.v1.1 MD15G1385700.v1.1
prunus_persica	Prupe.1G532500_v2.0.a1
pyrus_communis	pycom08g17270 pycom15g34600
rosa_chinensis	RchiOBHm_Chr6g0274921
rosa_laevigata	RLG00000013509
rosa_multiflora	Rmu_co8266267.1_g000001 Rmu_sc0002311.1_g000019
rosa_roxburghii	Rroxscaffold_1G00028490 Rroxscaffold_7G00193820
rosa_rugosa	Rorug05G0270600 Rorug06G0086200
rosa_samantha	Rh5AG343600 Rh5BG354200 Rh5CG380200 Rh5DG369700 Rh6AG201000 Rh6BG204600 Rh6CG206000 Rh6DG196200
rosa_wichuraiana	Rw5G032350 Rw5G032460 Rw6G017490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	128, 251
AclWI	GGATC	1 cut(s)	547
AcsI	RAATTY	1 cut(s)	577
AcuI	CTGAAG	2 cut(s)	484, 510
AgsI	TTSAA	4 cut(s)	56, 201, 544, 722
AjnI	CCWGG	1 cut(s)	112
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	7 cut(s)	146, 302, 379, 488, 666, 689, 704
AluI	AGCT	7 cut(s)	146, 302, 379, 488, 666, 689, 704
Alw21I	GWGCWC	1 cut(s)	267
AlwI	GGATC	1 cut(s)	547
AlwNI	CAGNNNCTG	1 cut(s)	302
AoxI	GGCC	3 cut(s)	115, 339, 404
ApeKI	GCWGC	2 cut(s)	254, 283
ApoI	RAATTY	1 cut(s)	577
AspS9I	GGNCC	1 cut(s)	405
AsuC2I	CCSGG	1 cut(s)	343
AsuHPI	GGTGA	2 cut(s)	85, 692
BaeGI	GKGCMC	1 cut(s)	477
Bbv12I	GWGCWC	1 cut(s)	267
BbvI	GCAGC	2 cut(s)	241, 270
BccI	CCATC	2 cut(s)	32, 160
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	114
BciVI	GTATCC	1 cut(s)	326
BcnI	CCSGG	1 cut(s)	343
BfaI	CTAG	2 cut(s)	432, 630
BfuI	GTATCC	1 cut(s)	326
BisI	GCNGC	3 cut(s)	252, 255, 284
BlsI	GCNGC	3 cut(s)	253, 256, 285
Bme1390I	CCNGG	2 cut(s)	114, 343
BmgT120I	GGNCC	1 cut(s)	405
BmiI	GGNNCC	2 cut(s)	407, 627
BmrFI	CCNGG	2 cut(s)	114, 343
BmsI	GCATC	4 cut(s)	115, 238, 466, 682
BpmI	CTGGAG	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	251
BpuMI	CCSGG	1 cut(s)	343
BsaJI	CCNNGG	5 cut(s)	189, 342, 469, 556, 567
Bse3DI	GCAATG	1 cut(s)	279
BseBI	CCWGG	1 cut(s)	114
BseDI	CCNNGG	5 cut(s)	189, 342, 469, 556, 567
BseGI	GGATG	3 cut(s)	40, 145, 253
BseMI	GCAATG	1 cut(s)	279
BseMII	CTCAG	1 cut(s)	161
BseSI	GKGCMC	1 cut(s)	477
BseXI	GCAGC	2 cut(s)	241, 270
BsgI	GTGCAG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	117, 341, 406
BsiHKAI	GWGCWC	1 cut(s)	267
BsiSI	CCGG	1 cut(s)	342
BsnI	GGCC	3 cut(s)	117, 341, 406
Bsp1286I	GDGCHC	2 cut(s)	267, 477
Bsp143I	GATC	2 cut(s)	352, 552
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	2 cut(s)	128, 251
BspANI	GGCC	3 cut(s)	117, 341, 406
BspCNI	CTCAG	1 cut(s)	160
BspLI	GGNNCC	2 cut(s)	407, 627
BspPI	GGATC	1 cut(s)	547
BsrDI	GCAATG	1 cut(s)	279
BssECI	CCNNGG	5 cut(s)	189, 342, 469, 556, 567
BssMI	GATC	2 cut(s)	352, 552
BssT1I	CCWWGG	3 cut(s)	189, 469, 567
Bst2UI	CCWGG	1 cut(s)	114
Bst4CI	ACNGT	1 cut(s)	713
Bst6I	CTCTTC	2 cut(s)	503, 613
BstC8I	GCNNGC	1 cut(s)	564
BstDEI	CTNAG	2 cut(s)	147, 671
BstDSI	CCRYGG	2 cut(s)	469, 556
BstF5I	GGATG	3 cut(s)	40, 145, 253
BstKTI	GATC	2 cut(s)	355, 555
BstMBI	GATC	2 cut(s)	352, 552
BstMWI	GCNNNNNNNGC	2 cut(s)	376, 701
BstNI	CCWGG	1 cut(s)	114
BstNSI	RCATGY	2 cut(s)	566, 734
BstSCI	CCNGG	2 cut(s)	112, 341
BstSLI	GKGCMC	1 cut(s)	477
BstV1I	GCAGC	2 cut(s)	241, 270
BsuI	GTATCC	1 cut(s)	326
BsuRI	GGCC	3 cut(s)	117, 341, 406
BtgI	CCRYGG	2 cut(s)	469, 556
BtsCI	GGATG	3 cut(s)	40, 145, 253
BtsIMutI	CAGTG	1 cut(s)	233
Cac8I	GCNNGC	1 cut(s)	564
CaiI	CAGNNNCTG	1 cut(s)	302
Cfr13I	GGNCC	1 cut(s)	405
CviAII	CATG	3 cut(s)	470, 563, 731
DdeI	CTNAG	2 cut(s)	147, 671
DpnI	GATC	2 cut(s)	354, 554
DpnII	GATC	2 cut(s)	352, 552
DraI	TTTAAA	1 cut(s)	603
Eam1104I	CTCTTC	2 cut(s)	503, 613
EarI	CTCTTC	2 cut(s)	503, 613
Eco130I	CCWWGG	3 cut(s)	189, 469, 567
Eco147I	AGGCCT	1 cut(s)	117
Eco57I	CTGAAG	2 cut(s)	484, 510
EcoO109I	RGGNCCY	1 cut(s)	405
EcoRII	CCWGG	1 cut(s)	112
EcoT14I	CCWWGG	3 cut(s)	189, 469, 567
ErhI	CCWWGG	3 cut(s)	189, 469, 567
FaeI	CATG	3 cut(s)	473, 566, 734
FatI	CATG	3 cut(s)	469, 562, 730
Fnu4HI	GCNGC	3 cut(s)	252, 255, 284
FokI	GGATG	3 cut(s)	47, 152, 260
Fsp4HI	GCNGC	3 cut(s)	252, 255, 284
FspBI	CTAG	2 cut(s)	432, 630
GluI	GCNGC	3 cut(s)	252, 255, 284
GsuI	CTGGAG	1 cut(s)	258
HaeIII	GGCC	3 cut(s)	117, 341, 406
HapII	CCGG	1 cut(s)	342
Hin1II	CATG	3 cut(s)	473, 566, 734
HinfI	GANTC	4 cut(s)	530, 584, 641, 740
HpaII	CCGG	1 cut(s)	342
HphI	GGTGA	2 cut(s)	85, 692
Hpy166II	GTNNAC	2 cut(s)	364, 683
Hpy188I	TCNGA	4 cut(s)	150, 294, 552, 583
Hpy188III	TCNNGA	4 cut(s)	56, 237, 527, 737
Hpy8I	GTNNAC	2 cut(s)	364, 683
HpyAV	CCTTC	1 cut(s)	550
HpyCH4III	ACNGT	1 cut(s)	713
HpyCH4V	TGCA	3 cut(s)	286, 336, 465
HpyF10VI	GCNNNNNNNGC	2 cut(s)	376, 701
HpyF3I	CTNAG	2 cut(s)	147, 671
Hsp92II	CATG	3 cut(s)	473, 566, 734
Kzo9I	GATC	2 cut(s)	352, 552
LmnI	GCTCC	1 cut(s)	190
Lsp1109I	GCAGC	2 cut(s)	241, 270
LweI	GCATC	4 cut(s)	115, 238, 466, 682
MaeI	CTAG	2 cut(s)	432, 630
MaeIII	GTNAC	1 cut(s)	91
MalI	GATC	2 cut(s)	354, 554
MboI	GATC	2 cut(s)	352, 552
MboII	GAAGA	2 cut(s)	490, 630
MhlI	GDGCHC	2 cut(s)	267, 477
MluCI	AATT	5 cut(s)	196, 212, 393, 422, 577
MmeI	TCCRAC	1 cut(s)	317
MnlI	CCTC	6 cut(s)	168, 396, 421, 506, 565, 614
MseI	TTAA	3 cut(s)	6, 602, 660
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	1 cut(s)	342
MspR9I	CCNGG	2 cut(s)	114, 343
MvaI	CCWGG	1 cut(s)	114
MwoI	GCNNNNNNNGC	2 cut(s)	376, 701
NciI	CCSGG	1 cut(s)	343
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	2 cut(s)	352, 552
NlaIII	CATG	3 cut(s)	473, 566, 734
NlaIV	GGNNCC	2 cut(s)	407, 627
NmuCI	GTSAC	1 cut(s)	91
NspI	RCATGY	2 cut(s)	566, 734
PaeI	GCATGC	1 cut(s)	566
PceI	AGGCCT	1 cut(s)	117
PfeI	GAWTC	4 cut(s)	530, 584, 641, 740
PkrI	GCNGC	3 cut(s)	253, 256, 285
Psp6I	CCWGG	1 cut(s)	112
PspGI	CCWGG	1 cut(s)	112
PspN4I	GGNNCC	2 cut(s)	407, 627
PspPI	GGNCC	1 cut(s)	405
PstNI	CAGNNNCTG	1 cut(s)	302
PvuII	CAGCTG	1 cut(s)	689
SaqAI	TTAA	3 cut(s)	6, 602, 660
SatI	GCNGC	3 cut(s)	252, 255, 284
Sau3AI	GATC	2 cut(s)	352, 552
Sau96I	GGNCC	1 cut(s)	405
ScrFI	CCNGG	2 cut(s)	114, 343
SduI	GDGCHC	2 cut(s)	267, 477
SfaNI	GCATC	4 cut(s)	115, 238, 466, 682
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SphI	GCATGC	1 cut(s)	566
Sse9I	AATT	5 cut(s)	196, 212, 393, 422, 577
SseBI	AGGCCT	1 cut(s)	117
SsiI	CCGC	2 cut(s)	128, 251
SspMI	CTAG	2 cut(s)	432, 630
StuI	AGGCCT	1 cut(s)	117
StyD4I	CCNGG	2 cut(s)	112, 341
StyI	CCWWGG	3 cut(s)	189, 469, 567
TaaI	ACNGT	1 cut(s)	713
TaqI	TCGA	2 cut(s)	101, 355
TasI	AATT	5 cut(s)	196, 212, 393, 422, 577
TauI	GCSGC	1 cut(s)	254
TfiI	GAWTC	4 cut(s)	530, 584, 641, 740
Tru1I	TTAA	3 cut(s)	6, 602, 660
Tru9I	TTAA	3 cut(s)	6, 602, 660
TscAI	CASTG	1 cut(s)	233
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	254, 283
Tsp45I	GTSAC	1 cut(s)	91
TspDTI	ATGAA	3 cut(s)	77, 156, 527
TspGWI	ACGGA	1 cut(s)	545
TspRI	CASTG	1 cut(s)	233
XapI	RAATTY	1 cut(s)	577
XceI	RCATGY	2 cut(s)	566, 734
XspI	CTAG	2 cut(s)	432, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.