Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

21106038 .. 21119085

Gene Structure 13048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1216100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGGGCGCCGATAGGGGGATTCATGTGGAGATTGATGGCCCTCTCTACCCCTTATCCGTTGCTAAGCTTCTGAGAGCTCTCGTGGAGGTTGAGAAGCCTGGGCTTCTTATCCTGGGCAAACAGGCTATCGATGATGGTTGCAATCAAACGGGGAAAATGGTGGCAGGGCTGCTGAACTGGCCTCAGGGGACGTTTGCTTCAAAGGTTTTGCTGGATAAGGAGAAGCAGGTAGTGACAGTGGACCGAGAGGTGGATGGTGGTCTCGAGACTCTTATGTCTAGATTTTCCAGCAGTGATCACCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006091 GO:0006520 GO:0006551 GO:0006552 GO:0006725 GO:0006778 GO:0006787 GO:0006807 GO:0008150 GO:0008152 GO:0009055 GO:0009056 GO:0009063 GO:0009081 GO:0009083 GO:0009987 GO:0015994 GO:0015996 GO:0016054 GO:0016491 GO:0019439 GO:0019752 GO:0022900 GO:0033013 GO:0033015 GO:0034641 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044270 GO:0044281 GO:0044282 GO:0044424 GO:0044444 GO:0044464 GO:0046149 GO:0046395 GO:0046483 GO:0046700 GO:0051186 GO:0051187 GO:0055114 GO:0071704 GO:1901360 GO:1901361 GO:1901564 GO:1901565 GO:1901575 GO:1901605 GO:1901606

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ETF

Protein Analysis

102

Amino Acids

10.93

Weight (kDa)

5.5

Isoelectric Point (pI)

22.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ETF	PF01012	1 - 90	9.4e-14	Electron transfer flavoprotein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	274
Acc36I	ACCTGC	1 cut(s)	217
AccB1I	GGYRCC	1 cut(s)	5
AcyI	GRCGYC	1 cut(s)	6
AfiI	CCNNNNNNNGG	2 cut(s)	15, 250
AgsI	TTSAA	1 cut(s)	201
AjnI	CCWGG	2 cut(s)	97, 111
AluBI	AGCT	2 cut(s)	67, 77
AluI	AGCT	2 cut(s)	67, 77
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	2 cut(s)	260, 266
Ama87I	CYCGRG	1 cut(s)	263
AoxI	GGCC	2 cut(s)	37, 179
ApeKI	GCWGC	1 cut(s)	169
AspLEI	GCGC	1 cut(s)	8
AspS9I	GGNCC	2 cut(s)	38, 241
AsuHPI	GGTGA	1 cut(s)	290
AvaI	CYCGRG	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	241
AxyI	CCTNAGG	1 cut(s)	183
BanI	GGYRCC	1 cut(s)	5
BanII	GRGCYC	1 cut(s)	79
BauI	CACGAG	1 cut(s)	80
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	1 cut(s)	156
BccI	CCATC	3 cut(s)	29, 128, 248
BciT130I	CCWGG	2 cut(s)	99, 113
BclI	TGATCA	1 cut(s)	295
BcoDI	GTCTC	2 cut(s)	260, 266
BfaI	CTAG	1 cut(s)	279
BfoI	RGCGCY	1 cut(s)	9
BfuAI	ACCTGC	1 cut(s)	217
BisI	GCNGC	1 cut(s)	170
BlpI	GCTNAGC	1 cut(s)	63
BlsI	GCNGC	1 cut(s)	171
Bme1390I	CCNGG	2 cut(s)	99, 113
Bme18I	GGWCC	1 cut(s)	241
BmeT110I	CYCGRG	1 cut(s)	263
BmgT120I	GGNCC	2 cut(s)	38, 241
BmiI	GGNNCC	1 cut(s)	7
BmrFI	CCNGG	2 cut(s)	99, 113
Bpu1102I	GCTNAGC	1 cut(s)	63
Bsa29I	ATCGAT	1 cut(s)	129
BsaHI	GRCGYC	1 cut(s)	6
BsaI	GGTCTC	1 cut(s)	266
BsaJI	CCNNGG	2 cut(s)	98, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	15, 250
Bse1I	ACTGG	1 cut(s)	182
Bse21I	CCTNAGG	1 cut(s)	183
BseBI	CCWGG	2 cut(s)	99, 113
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	2 cut(s)	98, 112
BseGI	GGATG	1 cut(s)	259
BseLI	CCNNNNNNNGG	2 cut(s)	15, 250
BseMII	CTCAG	2 cut(s)	62, 197
BseNI	ACTGG	1 cut(s)	182
BseXI	GCAGC	1 cut(s)	156
BshFI	GGCC	2 cut(s)	39, 181
BshNI	GGYRCC	1 cut(s)	5
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	1 cut(s)	79
BsiHKCI	CYCGRG	1 cut(s)	263
BslFI	GGGAC	1 cut(s)	202
BslI	CCNNNNNNNGG	2 cut(s)	15, 250
BsmAI	GTCTC	2 cut(s)	260, 266
BsmFI	GGGAC	1 cut(s)	202
BsnI	GGCC	2 cut(s)	39, 181
Bso31I	GGTCTC	1 cut(s)	266
BsoBI	CYCGRG	1 cut(s)	263
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	1 cut(s)	295
Bsp1720I	GCTNAGC	1 cut(s)	63
BspANI	GGCC	2 cut(s)	39, 181
BspCNI	CTCAG	2 cut(s)	63, 196
BspDI	ATCGAT	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	7
BspMI	ACCTGC	1 cut(s)	217
BspT107I	GGYRCC	1 cut(s)	5
BspTNI	GGTCTC	1 cut(s)	266
BsrI	ACTGG	1 cut(s)	182
BssECI	CCNNGG	2 cut(s)	98, 112
BssMI	GATC	1 cut(s)	295
BssNI	GRCGYC	1 cut(s)	6
BssSI	CACGAG	1 cut(s)	80
Bst2BI	CACGAG	1 cut(s)	80
Bst2UI	CCWGG	2 cut(s)	99, 113
Bst4CI	ACNGT	1 cut(s)	238
BstACI	GRCGYC	1 cut(s)	6
BstDEI	CTNAG	3 cut(s)	63, 71, 183
BstF5I	GGATG	1 cut(s)	259
BstH2I	RGCGCY	1 cut(s)	9
BstHHI	GCGC	1 cut(s)	8
BstKTI	GATC	1 cut(s)	298
BstMAI	GTCTC	2 cut(s)	260, 266
BstMBI	GATC	1 cut(s)	295
BstMWI	GCNNNNNNNGC	1 cut(s)	178
BstNI	CCWGG	2 cut(s)	99, 113
BstSCI	CCNGG	2 cut(s)	97, 111
BstV1I	GCAGC	1 cut(s)	156
Bsu15I	ATCGAT	1 cut(s)	129
Bsu36I	CCTNAGG	1 cut(s)	183
BsuRI	GGCC	2 cut(s)	39, 181
BsuTUI	ATCGAT	1 cut(s)	129
BtsCI	GGATG	1 cut(s)	259
BtsI	GCAGTG	1 cut(s)	298
BtsIMutI	CAGTG	3 cut(s)	243, 298, 301
BveI	ACCTGC	1 cut(s)	217
CfoI	GCGC	1 cut(s)	8
Cfr13I	GGNCC	2 cut(s)	38, 241
ClaI	ATCGAT	1 cut(s)	129
CviAII	CATG	1 cut(s)	23
CviJI	RGCY	8 cut(s)	39, 67, 77, 97, 103, 125, 169, 181
CviKI_1	RGCY	8 cut(s)	39, 67, 77, 97, 103, 125, 169, 181
DdeI	CTNAG	3 cut(s)	63, 71, 183
DinI	GGCGCC	1 cut(s)	7
DpnI	GATC	1 cut(s)	297
DpnII	GATC	1 cut(s)	295
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
Ecl136II	GAGCTC	1 cut(s)	77
Eco24I	GRGCYC	1 cut(s)	79
Eco31I	GGTCTC	1 cut(s)	266
Eco47I	GGWCC	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	77
Eco81I	CCTNAGG	1 cut(s)	183
Eco88I	CYCGRG	1 cut(s)	263
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	97, 111
EcoT38I	GRGCYC	1 cut(s)	79
EgeI	GGCGCC	1 cut(s)	7
EheI	GGCGCC	1 cut(s)	7
FaeI	CATG	1 cut(s)	26
FaiI	YATR	2 cut(s)	24, 275
FaqI	GGGAC	1 cut(s)	202
FatI	CATG	1 cut(s)	22
FbaI	TGATCA	1 cut(s)	295
Fnu4HI	GCNGC	1 cut(s)	170
FokI	GGATG	1 cut(s)	266
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	1 cut(s)	170
FspBI	CTAG	1 cut(s)	279
GlaI	GCGC	1 cut(s)	7
GluI	GCNGC	1 cut(s)	170
HaeII	RGCGCY	1 cut(s)	9
HaeIII	GGCC	2 cut(s)	39, 181
HhaI	GCGC	1 cut(s)	8
Hin1I	GRCGYC	1 cut(s)	6
Hin1II	CATG	1 cut(s)	26
Hin6I	GCGC	1 cut(s)	6
HinP1I	GCGC	1 cut(s)	6
HindIII	AAGCTT	1 cut(s)	65
HinfI	GANTC	2 cut(s)	19, 268
HphI	GGTGA	1 cut(s)	290
Hpy166II	GTNNAC	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	72
Hpy188III	TCNNGA	3 cut(s)	263, 265, 279
Hpy8I	GTNNAC	1 cut(s)	241
HpyCH4III	ACNGT	1 cut(s)	238
HpyCH4IV	ACGT	1 cut(s)	191
HpyCH4V	TGCA	1 cut(s)	141
HpyF10VI	GCNNNNNNNGC	1 cut(s)	178
HpyF3I	CTNAG	3 cut(s)	63, 71, 183
HpySE526I	ACGT	1 cut(s)	191
Hsp92I	GRCGYC	1 cut(s)	6
Hsp92II	CATG	1 cut(s)	26
HspAI	GCGC	1 cut(s)	6
KasI	GGCGCC	1 cut(s)	5
Ksp22I	TGATCA	1 cut(s)	295
Kzo9I	GATC	1 cut(s)	295
Lsp1109I	GCAGC	1 cut(s)	156
MaeI	CTAG	1 cut(s)	279
MaeII	ACGT	1 cut(s)	191
MaeIII	GTNAC	1 cut(s)	232
MalI	GATC	1 cut(s)	297
MboI	GATC	1 cut(s)	295
MhlI	GDGCHC	1 cut(s)	79
Mly113I	GGCGCC	1 cut(s)	6
MlyI	GAGTC	1 cut(s)	262
MnlI	CCTC	4 cut(s)	51, 79, 192, 241
MspR9I	CCNGG	2 cut(s)	99, 113
MvaI	CCWGG	2 cut(s)	99, 113
MwoI	GCNNNNNNNGC	1 cut(s)	178
NarI	GGCGCC	1 cut(s)	6
NdeII	GATC	1 cut(s)	295
NlaIII	CATG	1 cut(s)	26
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	232
PaeR7I	CTCGAG	1 cut(s)	263
PfeI	GAWTC	1 cut(s)	19
PkrI	GCNGC	1 cut(s)	171
PleI	GAGTC	1 cut(s)	262
PluTI	GGCGCC	1 cut(s)	9
PpsI	GAGTC	1 cut(s)	262
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	2 cut(s)	97, 111
PspGI	CCWGG	2 cut(s)	97, 111
PspN4I	GGNNCC	1 cut(s)	7
PspPI	GGNCC	2 cut(s)	38, 241
SacI	GAGCTC	1 cut(s)	79
SatI	GCNGC	1 cut(s)	170
Sau3AI	GATC	1 cut(s)	295
Sau96I	GGNCC	2 cut(s)	38, 241
SchI	GAGTC	1 cut(s)	262
ScrFI	CCNGG	2 cut(s)	99, 113
SduI	GDGCHC	1 cut(s)	79
SetI	ASST	7 cut(s)	69, 79, 90, 194, 207, 231, 252
SfoI	GGCGCC	1 cut(s)	7
Sfr274I	CTCGAG	1 cut(s)	263
SinI	GGWCC	1 cut(s)	241
SlaI	CTCGAG	1 cut(s)	263
SmlI	CTYRAG	1 cut(s)	263
SmoI	CTYRAG	1 cut(s)	263
SspDI	GGCGCC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	279
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	2 cut(s)	97, 111
TaaI	ACNGT	1 cut(s)	238
TaiI	ACGT	1 cut(s)	194
TaqI	TCGA	2 cut(s)	129, 264
TaqII	GACCGA	1 cut(s)	258
TfiI	GAWTC	1 cut(s)	19
TscAI	CASTG	2 cut(s)	243, 298
TseFI	GTSAC	1 cut(s)	232
TseI	GCWGC	1 cut(s)	169
Tsp45I	GTSAC	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	11
TspGWI	ACGGA	1 cut(s)	46
TspRI	CASTG	2 cut(s)	243, 298
VpaK11BI	GGWCC	1 cut(s)	241
XbaI	TCTAGA	1 cut(s)	278
XhoI	CTCGAG	1 cut(s)	263
XspI	CTAG	1 cut(s)	279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.