Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

29493826 .. 29494713

Gene Structure 888 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG273000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 363 bp

ATGCTTGGCCCTAATTTTGCTGGGAAGACCTCTTTTATTAATATGATGATTGGTCTGACAAAGTCAACCTCTGGCACGACTTTTGTTCAAGGTCTGGACATCAACACTCGGATGAAATATATACTAGCATGGGAGTTTGTCTATAGCATGAAATTTAAATACCTTCTTGAGTTTGGGACATTTTGCAGCCTACTAAGGGAAACCCTGACTGGAAGGGAGCATCTGCTTTTTTATAGAAGACTTAAGAACCTCAAAGGTTCTGGATTAAGACAAGTTGTTTTTATGGATGAGCCTAGCACTGGACTCGATCCAGCTTCAAGACATAATCTATACGGGCAAAACAAGATTGTGCGATCATCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

120

Amino Acids

13.73

Weight (kDa)

9.94

Isoelectric Point (pI)

28.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	302
AcsI	RAATTY	1 cut(s)	152
AfiI	CCNNNNNNNGG	2 cut(s)	196, 299
AflII	CTTAAG	1 cut(s)	242
AgsI	TTSAA	2 cut(s)	89, 318
AluBI	AGCT	1 cut(s)	314
AluI	AGCT	1 cut(s)	314
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	1 cut(s)	7
ApeKI	GCWGC	1 cut(s)	186
ApoI	RAATTY	1 cut(s)	152
AseI	ATTAAT	1 cut(s)	39
AspS9I	GGNCC	1 cut(s)	8
BbsI	GAAGAC	2 cut(s)	32, 244
BbvI	GCAGC	1 cut(s)	198
BcgI	CGANNNNNNTGC	2 cut(s)	286, 320
BfaI	CTAG	2 cut(s)	125, 294
BfmI	CTRYAG	1 cut(s)	142
BfrI	CTTAAG	1 cut(s)	242
BisI	GCNGC	1 cut(s)	187
BlsI	GCNGC	1 cut(s)	188
BmgT120I	GGNCC	1 cut(s)	8
BmsI	GCATC	1 cut(s)	229
BpiI	GAAGAC	2 cut(s)	32, 244
BpuEI	CTTGAG	1 cut(s)	188
Bsc4I	CCNNNNNNNGG	2 cut(s)	196, 299
Bse1I	ACTGG	2 cut(s)	214, 304
BseGI	GGATG	3 cut(s)	117, 292, 356
BseLI	CCNNNNNNNGG	2 cut(s)	196, 299
BseNI	ACTGG	2 cut(s)	214, 304
BseXI	GCAGC	1 cut(s)	198
BseYI	CCCAGC	1 cut(s)	20
BshFI	GGCC	1 cut(s)	9
BslFI	GGGAC	1 cut(s)	190
BslI	CCNNNNNNNGG	2 cut(s)	196, 299
BsmFI	GGGAC	1 cut(s)	190
BsnI	GGCC	1 cut(s)	9
Bsp143I	GATC	2 cut(s)	307, 353
BspANI	GGCC	1 cut(s)	9
BspPI	GGATC	1 cut(s)	302
BspTI	CTTAAG	1 cut(s)	242
BsrI	ACTGG	2 cut(s)	214, 304
BssMI	GATC	2 cut(s)	307, 353
BstAFI	CTTAAG	1 cut(s)	242
BstDEI	CTNAG	1 cut(s)	194
BstF5I	GGATG	3 cut(s)	117, 292, 356
BstKTI	GATC	2 cut(s)	310, 356
BstMBI	GATC	2 cut(s)	307, 353
BstSFI	CTRYAG	1 cut(s)	142
BstV1I	GCAGC	1 cut(s)	198
BstV2I	GAAGAC	2 cut(s)	32, 244
BsuRI	GGCC	1 cut(s)	9
BtsCI	GGATG	3 cut(s)	117, 292, 356
BtsIMutI	CAGTG	1 cut(s)	297
Cfr13I	GGNCC	1 cut(s)	8
CviAII	CATG	2 cut(s)	129, 148
CviJI	RGCY	4 cut(s)	9, 189, 292, 314
CviKI_1	RGCY	4 cut(s)	9, 189, 292, 314
DdeI	CTNAG	1 cut(s)	194
DpnI	GATC	2 cut(s)	309, 355
DpnII	GATC	2 cut(s)	307, 353
DraI	TTTAAA	1 cut(s)	157
FaeI	CATG	2 cut(s)	132, 151
FaqI	GGGAC	1 cut(s)	190
FatI	CATG	2 cut(s)	128, 147
Fnu4HI	GCNGC	1 cut(s)	187
FokI	GGATG	3 cut(s)	124, 299, 343
Fsp4HI	GCNGC	1 cut(s)	187
FspBI	CTAG	2 cut(s)	125, 294
GluI	GCNGC	1 cut(s)	187
GsaI	CCCAGC	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	9
Hin1II	CATG	2 cut(s)	132, 151
HincII	GTYRAC	1 cut(s)	66
HindII	GTYRAC	1 cut(s)	66
HinfI	GANTC	1 cut(s)	303
Hpy166II	GTNNAC	1 cut(s)	66
Hpy188I	TCNGA	2 cut(s)	57, 111
Hpy188III	TCNNGA	4 cut(s)	95, 167, 261, 318
Hpy8I	GTNNAC	1 cut(s)	66
HpyAV	CCTTC	2 cut(s)	173, 207
HpyCH4V	TGCA	1 cut(s)	186
HpyF3I	CTNAG	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	132, 151
Kzo9I	GATC	2 cut(s)	307, 353
LmnI	GCTCC	1 cut(s)	217
LpnPI	CCDG	8 cut(s)	6, 57, 80, 195, 218, 246, 285, 324
Lsp1109I	GCAGC	1 cut(s)	198
LweI	GCATC	1 cut(s)	229
MaeI	CTAG	2 cut(s)	125, 294
MalI	GATC	2 cut(s)	309, 355
MboI	GATC	2 cut(s)	307, 353
MboII	GAAGA	2 cut(s)	37, 249
MluCI	AATT	2 cut(s)	13, 152
MlyI	GAGTC	1 cut(s)	297
MnlI	CCTC	3 cut(s)	40, 79, 260
MseI	TTAA	4 cut(s)	39, 156, 243, 266
MslI	CAYNNNNRTG	1 cut(s)	110
MspCI	CTTAAG	1 cut(s)	242
NdeII	GATC	2 cut(s)	307, 353
NlaIII	CATG	2 cut(s)	132, 151
PflFI	GACNNNGTC	1 cut(s)	61
PkrI	GCNGC	1 cut(s)	188
PleI	GAGTC	1 cut(s)	297
PpsI	GAGTC	1 cut(s)	297
PshBI	ATTAAT	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	20
PspPI	GGNCC	1 cut(s)	8
PsyI	GACNNNGTC	1 cut(s)	61
RseI	CAYNNNNRTG	1 cut(s)	110
SaqAI	TTAA	4 cut(s)	39, 156, 243, 266
SatI	GCNGC	1 cut(s)	187
Sau3AI	GATC	2 cut(s)	307, 353
Sau96I	GGNCC	1 cut(s)	8
SchI	GAGTC	1 cut(s)	297
SetI	ASST	7 cut(s)	32, 71, 94, 165, 252, 259, 316
SfaNI	GCATC	1 cut(s)	229
SfcI	CTRYAG	1 cut(s)	142
SmiI	ATTTAAAT	1 cut(s)	157
SmiMI	CAYNNNNRTG	1 cut(s)	110
SmlI	CTYRAG	2 cut(s)	167, 242
SmoI	CTYRAG	2 cut(s)	167, 242
Sse9I	AATT	2 cut(s)	13, 152
SspMI	CTAG	2 cut(s)	125, 294
SwaI	ATTTAAAT	1 cut(s)	157
TaqI	TCGA	1 cut(s)	306
TasI	AATT	2 cut(s)	13, 152
Tru1I	TTAA	4 cut(s)	39, 156, 243, 266
Tru9I	TTAA	4 cut(s)	39, 156, 243, 266
TscAI	CASTG	1 cut(s)	304
TseI	GCWGC	1 cut(s)	186
TspDTI	ATGAA	2 cut(s)	128, 164
TspRI	CASTG	1 cut(s)	304
Tth111I	GACNNNGTC	1 cut(s)	61
Vha464I	CTTAAG	1 cut(s)	242
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	1 cut(s)	152
XspI	CTAG	2 cut(s)	125, 294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.