Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

69521613 .. 69525415

Gene Structure 3803 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG401500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 672 bp

ATGGAGAAGGTTGAGAGTTTGCTATTGGATCAAGATAGTACAAGTCACGTGATCATCTACCATGACCTGAAAAAGGTGTATCCAGGAAGAGATGGAAACCTTGAGAAGTTTGCAGTGAAAGGGTTATCTCTTGCTTTGCCACGAGGGGAATGCTTTGGCATGCTTAGTCCCAATGGTGCAGGGAAGACCTCTTTTATTAGCATGATGATTGGTCTGACAAAACTAAGCTCTGGTGCGGCATATGTTCATGGTATGGACATTTGGACTCAGATGGATGAAATATATACCAGCATGGGTGTTTGTCCACAGCACGAGGAGAGCCTGACTGGAAGGGAGCATTTGCTGTTTTATGGTAGACTTAAGAGTCTCAAAGGTTCTGCCTTAATAGAAGTTGTGGAAGAGTCTTTGAAGAGTGTGAATCTGTTCTATGGTGGAGTTGCTGACAAACAGGCTGGGAAGTATAGTAGAGGTATGAAGAGAAGGCTTAGCATTGCAATTTCACTCATAGGGGATCCGAAGAAAATAGATAGTGATAAGTCTGATCTCTGGCTTATATATGAATCTGTGCTCGTGTTAGGTACTGTTGTGAAGCGGAAACGAGGGACGCTGTTGTGTGATCTAGCCCAGCTAGGTGATGAAATCCTTATAGCGAGGGTGGACAAGGAGGGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

223

Amino Acids

24.56

Weight (kDa)

7.69

Isoelectric Point (pI)

31.26

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	40 - 173	2e-14	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	363
AccI	GTMKAC	1 cut(s)	355
AciI	CCGC	2 cut(s)	236, 592
AclWI	GGATC	3 cut(s)	36, 506, 519
AcvI	CACGTG	1 cut(s)	49
AfaI	GTAC	2 cut(s)	40, 580
AfiI	CCNNNNNNNGG	1 cut(s)	73
AflII	CTTAAG	1 cut(s)	359
AgsI	TTSAA	1 cut(s)	409
AjnI	CCWGG	1 cut(s)	82
AluBI	AGCT	2 cut(s)	228, 628
AluI	AGCT	2 cut(s)	228, 628
Alw21I	GWGCWC	1 cut(s)	570
Alw26I	GTCTC	1 cut(s)	371
AlwI	GGATC	3 cut(s)	36, 506, 519
Asp700I	GAANNNNTTC	1 cut(s)	422
AsuHPI	GGTGA	1 cut(s)	644
BaeI	ACNNNNGTAYC	2 cut(s)	570, 603
BamHI	GGATCC	1 cut(s)	511
BauI	CACGAG	3 cut(s)	141, 311, 569
BbrPI	CACGTG	1 cut(s)	49
BbsI	GAAGAC	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	570
BccI	CCATC	2 cut(s)	86, 265
BcgI	CGANNNNNNTGC	2 cut(s)	132, 166
BciT130I	CCWGG	1 cut(s)	84
BciVI	GTATCC	1 cut(s)	90
BclI	TGATCA	1 cut(s)	51
BcoDI	GTCTC	1 cut(s)	371
BfaI	CTAG	2 cut(s)	620, 629
BfrI	CTTAAG	1 cut(s)	359
BfuI	GTATCC	1 cut(s)	90
BisI	GCNGC	1 cut(s)	237
BlpI	GCTNAGC	1 cut(s)	485
BlsI	GCNGC	1 cut(s)	238
Bme1390I	CCNGG	1 cut(s)	84
BmiI	GGNNCC	1 cut(s)	513
BmrFI	CCNGG	1 cut(s)	84
BpiI	GAAGAC	1 cut(s)	191
Bpu1102I	GCTNAGC	1 cut(s)	485
BpuEI	CTTGAG	1 cut(s)	122
BsaAI	YACGTR	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	1 cut(s)	73
Bse1I	ACTGG	1 cut(s)	331
Bse3DI	GCAATG	1 cut(s)	489
BseBI	CCWGG	1 cut(s)	84
BseGI	GGATG	1 cut(s)	280
BseLI	CCNNNNNNNGG	1 cut(s)	73
BseMI	GCAATG	1 cut(s)	489
BseMII	CTCAG	1 cut(s)	281
BseNI	ACTGG	1 cut(s)	331
BseRI	GAGGAG	1 cut(s)	329
BseYI	CCCAGC	2 cut(s)	452, 624
BsgI	GTGCAG	1 cut(s)	198
BsiHKAI	GWGCWC	1 cut(s)	570
BslFI	GGGAC	2 cut(s)	153, 616
BslI	CCNNNNNNNGG	1 cut(s)	73
BsmAI	GTCTC	1 cut(s)	371
BsmFI	GGGAC	2 cut(s)	153, 616
BsmI	GAATGC	1 cut(s)	155
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp143I	GATC	5 cut(s)	28, 51, 511, 541, 616
Bsp1720I	GCTNAGC	1 cut(s)	485
BspACI	CCGC	2 cut(s)	236, 592
BspCNI	CTCAG	1 cut(s)	280
BspLI	GGNNCC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	36, 506, 519
BspTI	CTTAAG	1 cut(s)	359
BsrDI	GCAATG	1 cut(s)	489
BsrI	ACTGG	1 cut(s)	331
BssMI	GATC	5 cut(s)	28, 51, 511, 541, 616
BssSI	CACGAG	3 cut(s)	141, 311, 569
Bst2BI	CACGAG	3 cut(s)	141, 311, 569
Bst2UI	CCWGG	1 cut(s)	84
Bst4CI	ACNGT	1 cut(s)	583
Bst6I	CTCTTC	4 cut(s)	82, 393, 404, 470
BstAFI	CTTAAG	1 cut(s)	359
BstBAI	YACGTR	1 cut(s)	49
BstC8I	GCNNGC	1 cut(s)	161
BstDEI	CTNAG	4 cut(s)	164, 224, 267, 485
BstENI	CCTNNNNNAGG	1 cut(s)	71
BstF5I	GGATG	1 cut(s)	280
BstKTI	GATC	5 cut(s)	31, 54, 514, 544, 619
BstMAI	GTCTC	1 cut(s)	371
BstMBI	GATC	5 cut(s)	28, 51, 511, 541, 616
BstNI	CCWGG	1 cut(s)	84
BstNSI	RCATGY	1 cut(s)	163
BstSCI	CCNGG	1 cut(s)	82
BstV2I	GAAGAC	1 cut(s)	191
BstX2I	RGATCY	1 cut(s)	511
BstYI	RGATCY	1 cut(s)	511
BsuI	GTATCC	1 cut(s)	90
BtsCI	GGATG	1 cut(s)	280
BtsI	GCAGTG	1 cut(s)	120
BtsIMutI	CAGTG	1 cut(s)	120
Cac8I	GCNNGC	1 cut(s)	161
CseI	GACGC	1 cut(s)	613
Csp6I	GTAC	2 cut(s)	39, 579
CviAII	CATG	5 cut(s)	62, 160, 202, 248, 292
CviJI	RGCY	7 cut(s)	228, 321, 452, 484, 550, 623, 628
CviKI_1	RGCY	7 cut(s)	228, 321, 452, 484, 550, 623, 628
CviQI	GTAC	2 cut(s)	39, 579
DdeI	CTNAG	4 cut(s)	164, 224, 267, 485
DpnI	GATC	5 cut(s)	30, 53, 513, 543, 618
DpnII	GATC	5 cut(s)	28, 51, 511, 541, 616
DrdI	GACNNNNNNGTC	1 cut(s)	363
DseDI	GACNNNNNNGTC	1 cut(s)	363
Eam1104I	CTCTTC	4 cut(s)	82, 393, 404, 470
EarI	CTCTTC	4 cut(s)	82, 393, 404, 470
Eco72I	CACGTG	1 cut(s)	49
EcoNI	CCTNNNNNAGG	1 cut(s)	71
EcoRII	CCWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	65, 163, 205, 251, 295
FaqI	GGGAC	2 cut(s)	153, 616
FatI	CATG	5 cut(s)	61, 159, 201, 247, 291
FauNDI	CATATG	1 cut(s)	241
FbaI	TGATCA	1 cut(s)	51
FblI	GTMKAC	1 cut(s)	355
Fnu4HI	GCNGC	1 cut(s)	237
FokI	GGATG	1 cut(s)	287
Fsp4HI	GCNGC	1 cut(s)	237
FspBI	CTAG	2 cut(s)	620, 629
GluI	GCNGC	1 cut(s)	237
GsaI	CCCAGC	2 cut(s)	456, 628
HgaI	GACGC	1 cut(s)	613
Hin1II	CATG	5 cut(s)	65, 163, 205, 251, 295
HinfI	GANTC	5 cut(s)	265, 364, 401, 418, 560
HphI	GGTGA	1 cut(s)	644
Hpy166II	GTNNAC	3 cut(s)	305, 356, 658
Hpy188I	TCNGA	4 cut(s)	216, 270, 516, 541
Hpy188III	TCNNGA	1 cut(s)	32
Hpy8I	GTNNAC	3 cut(s)	305, 356, 658
HpyAV	CCTTC	2 cut(s)	324, 474
HpyCH4III	ACNGT	1 cut(s)	583
HpyCH4IV	ACGT	1 cut(s)	48
HpyCH4V	TGCA	3 cut(s)	113, 179, 494
HpyF3I	CTNAG	4 cut(s)	164, 224, 267, 485
HpySE526I	ACGT	1 cut(s)	48
Hsp92II	CATG	5 cut(s)	65, 163, 205, 251, 295
Ksp22I	TGATCA	1 cut(s)	51
Kzo9I	GATC	5 cut(s)	28, 51, 511, 541, 616
LmnI	GCTCC	1 cut(s)	334
MaeI	CTAG	2 cut(s)	620, 629
MaeII	ACGT	1 cut(s)	48
MaeIII	GTNAC	1 cut(s)	44
MalI	GATC	5 cut(s)	30, 53, 513, 543, 618
MboI	GATC	5 cut(s)	28, 51, 511, 541, 616
MboII	GAAGA	6 cut(s)	99, 196, 410, 421, 487, 529
MflI	RGATCY	1 cut(s)	511
MhlI	GDGCHC	1 cut(s)	570
MluCI	AATT	1 cut(s)	495
MlyI	GAGTC	3 cut(s)	259, 373, 410
MnlI	CCTC	7 cut(s)	137, 199, 307, 461, 593, 645, 658
MroXI	GAANNNNTTC	1 cut(s)	422
MseI	TTAA	2 cut(s)	360, 383
MspCI	CTTAAG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	155
MvaI	CCWGG	1 cut(s)	84
NdeI	CATATG	1 cut(s)	241
NdeII	GATC	5 cut(s)	28, 51, 511, 541, 616
NlaIII	CATG	5 cut(s)	65, 163, 205, 251, 295
NlaIV	GGNNCC	1 cut(s)	513
NmuCI	GTSAC	1 cut(s)	44
NspI	RCATGY	1 cut(s)	163
PaeI	GCATGC	1 cut(s)	163
PctI	GAATGC	1 cut(s)	155
PdmI	GAANNNNTTC	1 cut(s)	422
PfeI	GAWTC	2 cut(s)	418, 560
PfoI	TCCNGGA	1 cut(s)	82
PkrI	GCNGC	1 cut(s)	238
PleI	GAGTC	3 cut(s)	259, 372, 409
PmaCI	CACGTG	1 cut(s)	49
PmlI	CACGTG	1 cut(s)	49
PpsI	GAGTC	3 cut(s)	259, 372, 409
Ppu21I	YACGTR	1 cut(s)	49
Psp6I	CCWGG	1 cut(s)	82
PspCI	CACGTG	1 cut(s)	49
PspFI	CCCAGC	2 cut(s)	452, 624
PspGI	CCWGG	1 cut(s)	82
PspN4I	GGNNCC	1 cut(s)	513
PsuI	RGATCY	1 cut(s)	511
RsaI	GTAC	2 cut(s)	40, 580
RsaNI	GTAC	2 cut(s)	39, 579
SaqAI	TTAA	2 cut(s)	360, 383
SatI	GCNGC	1 cut(s)	237
Sau3AI	GATC	5 cut(s)	28, 51, 511, 541, 616
SchI	GAGTC	3 cut(s)	259, 373, 410
ScrFI	CCNGG	1 cut(s)	84
SduI	GDGCHC	1 cut(s)	570
SmlI	CTYRAG	2 cut(s)	101, 359
SmoI	CTYRAG	2 cut(s)	101, 359
SphI	GCATGC	1 cut(s)	163
Sse9I	AATT	1 cut(s)	495
SsiI	CCGC	2 cut(s)	236, 592
SspMI	CTAG	2 cut(s)	620, 629
StyD4I	CCNGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	583
TaiI	ACGT	1 cut(s)	51
TasI	AATT	1 cut(s)	495
TatI	WGTACW	1 cut(s)	38
TauI	GCSGC	1 cut(s)	239
TfiI	GAWTC	2 cut(s)	418, 560
Tru1I	TTAA	2 cut(s)	360, 383
Tru9I	TTAA	2 cut(s)	360, 383
TscAI	CASTG	1 cut(s)	120
TseFI	GTSAC	1 cut(s)	44
Tsp45I	GTSAC	1 cut(s)	44
TspDTI	ATGAA	5 cut(s)	236, 291, 488, 573, 651
TspRI	CASTG	1 cut(s)	120
Vha464I	CTTAAG	1 cut(s)	359
XagI	CCTNNNNNAGG	1 cut(s)	71
XceI	RCATGY	1 cut(s)	163
XmiI	GTMKAC	1 cut(s)	355
XmnI	GAANNNNTTC	1 cut(s)	422
XspI	CTAG	2 cut(s)	620, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.