Rroxscaffold_1G00038640

ABC transporter A family member

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0005930
Physical Location & Seq
Reverse (-)
56122855 .. 56127927
5073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00038640.1

Sequence Viewer

Length: 288 bp
ATGAGAGGGATGTCTCTTGCTTTGTCTCGAGGGGAGTGCTTTGGTATGCTTGGCCCTAGTGGTACTGGGAAGACCTCTTTTATTAATATGGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTGTTTCATGGTGGGGTTGTAGACCAAAGAGCTGGAAAGTATAGTGGAAGTATGAAGAGAAGGCTTAGCATCGCAATTTCACTGATAGGTGATCCTAAAGAAGCTGTCAAGGGACAATTATGGAGATTATGTGATCCCCAAGGGAAGCCTCCAGGTGTAATACAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane_3 ABC_tran

Protein Analysis

95

Amino Acids

10.14

Weight (kDa)

9.83

Isoelectric Point (pI)

35.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 141
AclWI GGATC 2 cut(s) 206, 248
AfaI GTAC 1 cut(s) 64
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 1 cut(s) 271
AluBI AGCT 2 cut(s) 152, 224
AluI AGCT 2 cut(s) 152, 224
Alw26I GTCTC 2 cut(s) 18, 30
AlwI GGATC 2 cut(s) 206, 248
Ama87I CYCGRG 1 cut(s) 27
AoxI GGCC 1 cut(s) 52
AseI ATTAAT 1 cut(s) 84
AspS9I GGNCC 1 cut(s) 53
AsuHPI GGTGA 1 cut(s) 221
AvaI CYCGRG 1 cut(s) 27
BbsI GAAGAC 1 cut(s) 77
BcgI CGANNNNNNTGC 2 cut(s) 18, 52
BciT130I CCWGG 1 cut(s) 273
BcoDI GTCTC 2 cut(s) 18, 30
BfaI CTAG 1 cut(s) 57
BlpI GCTNAGC 1 cut(s) 185
Bme1390I CCNGG 1 cut(s) 273
BmeT110I CYCGRG 1 cut(s) 27
BmgT120I GGNCC 1 cut(s) 53
BmrFI CCNGG 1 cut(s) 273
BmrI ACTGGG 1 cut(s) 75
BmsI GCATC 1 cut(s) 198
BmuI ACTGGG 1 cut(s) 75
BpiI GAAGAC 1 cut(s) 77
BpmI CTGGAG 1 cut(s) 255
Bpu1102I GCTNAGC 1 cut(s) 185
BsaJI CCNNGG 1 cut(s) 259
BsaXI ACNNNNNCTCC 2 cut(s) 235, 265
Bse1I ACTGG 1 cut(s) 70
BseBI CCWGG 1 cut(s) 273
BseDI CCNNGG 1 cut(s) 259
BseGI GGATG 1 cut(s) 15
BseNI ACTGG 1 cut(s) 70
BshFI GGCC 1 cut(s) 54
BsiHKCI CYCGRG 1 cut(s) 27
BslFI GGGAC 1 cut(s) 246
BsmAI GTCTC 2 cut(s) 18, 30
BsmFI GGGAC 1 cut(s) 246
BsnI GGCC 1 cut(s) 54
BsoBI CYCGRG 1 cut(s) 27
Bsp143I GATC 2 cut(s) 211, 253
Bsp1720I GCTNAGC 1 cut(s) 185
BspANI GGCC 1 cut(s) 54
BspPI GGATC 2 cut(s) 206, 248
BsrI ACTGG 1 cut(s) 70
BssECI CCNNGG 1 cut(s) 259
BssMI GATC 2 cut(s) 211, 253
BssT1I CCWWGG 1 cut(s) 259
Bst2UI CCWGG 1 cut(s) 273
Bst4CI ACNGT 1 cut(s) 285
Bst6I CTCTTC 1 cut(s) 170
BstDEI CTNAG 1 cut(s) 185
BstF5I GGATG 1 cut(s) 15
BstKTI GATC 2 cut(s) 214, 256
BstMAI GTCTC 2 cut(s) 18, 30
BstMBI GATC 2 cut(s) 211, 253
BstNI CCWGG 1 cut(s) 273
BstSCI CCNGG 1 cut(s) 271
BstV2I GAAGAC 1 cut(s) 77
BstXI CCANNNNNNTGG 1 cut(s) 152
BsuRI GGCC 1 cut(s) 54
BtgZI GCGATG 1 cut(s) 175
BtsCI GGATG 1 cut(s) 15
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 99, 200
Cfr13I GGNCC 1 cut(s) 53
Csp6I GTAC 1 cut(s) 63
CviAII CATG 1 cut(s) 128
CviJI RGCY 5 cut(s) 54, 152, 184, 224, 268
CviKI_1 RGCY 5 cut(s) 54, 152, 184, 224, 268
CviQI GTAC 1 cut(s) 63
DdeI CTNAG 1 cut(s) 185
DpnI GATC 2 cut(s) 213, 255
DpnII GATC 2 cut(s) 211, 253
Eam1104I CTCTTC 1 cut(s) 170
EarI CTCTTC 1 cut(s) 170
Eco130I CCWWGG 1 cut(s) 259
Eco88I CYCGRG 1 cut(s) 27
EcoRII CCWGG 1 cut(s) 271
EcoT14I CCWWGG 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 259
FaeI CATG 1 cut(s) 131
FaiI YATR 7 cut(s) 47, 89, 129, 162, 173, 241, 250
FaqI GGGAC 1 cut(s) 246
FatI CATG 1 cut(s) 127
FblI GTMKAC 1 cut(s) 141
FokI GGATG 1 cut(s) 22
FspBI CTAG 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 255
HaeIII GGCC 1 cut(s) 54
Hin1II CATG 1 cut(s) 131
HinfI GANTC 1 cut(s) 101
HphI GGTGA 1 cut(s) 221
Hpy166II GTNNAC 1 cut(s) 142
Hpy188III TCNNGA 1 cut(s) 27
Hpy8I GTNNAC 1 cut(s) 142
HpyAV CCTTC 1 cut(s) 174
HpyCH4III ACNGT 1 cut(s) 285
HpyF3I CTNAG 1 cut(s) 185
Hsp92II CATG 1 cut(s) 131
Kzo9I GATC 2 cut(s) 211, 253
LpnPI CCDG 3 cut(s) 51, 138, 258
LweI GCATC 1 cut(s) 198
MaeI CTAG 1 cut(s) 57
MalI GATC 2 cut(s) 213, 255
MboI GATC 2 cut(s) 211, 253
MboII GAAGA 3 cut(s) 82, 110, 187
MluCI AATT 2 cut(s) 195, 236
MnlI CCTC 3 cut(s) 23, 85, 279
MseI TTAA 1 cut(s) 84
MspR9I CCNGG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 273
NdeII GATC 2 cut(s) 211, 253
NlaIII CATG 1 cut(s) 131
PaeR7I CTCGAG 1 cut(s) 27
PfeI GAWTC 1 cut(s) 101
PshBI ATTAAT 1 cut(s) 84
Psp6I CCWGG 1 cut(s) 271
PspGI CCWGG 1 cut(s) 271
PspPI GGNCC 1 cut(s) 53
RsaI GTAC 1 cut(s) 64
RsaNI GTAC 1 cut(s) 63
SaqAI TTAA 1 cut(s) 84
Sau3AI GATC 2 cut(s) 211, 253
Sau96I GGNCC 1 cut(s) 53
ScrFI CCNGG 1 cut(s) 273
SetI ASST 5 cut(s) 77, 154, 211, 226, 277
SfaNI GCATC 1 cut(s) 198
Sfr274I CTCGAG 1 cut(s) 27
SlaI CTCGAG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 27
SmoI CTYRAG 1 cut(s) 27
Sse9I AATT 2 cut(s) 195, 236
SspMI CTAG 1 cut(s) 57
StyD4I CCNGG 1 cut(s) 271
StyI CCWWGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 285
TaqI TCGA 1 cut(s) 28
TasI AATT 2 cut(s) 195, 236
TfiI GAWTC 1 cut(s) 101
Tru1I TTAA 1 cut(s) 84
Tru9I TTAA 1 cut(s) 84
TscAI CASTG 2 cut(s) 99, 207
TspDTI ATGAA 2 cut(s) 116, 188
TspRI CASTG 2 cut(s) 99, 207
VspI ATTAAT 1 cut(s) 84
XhoI CTCGAG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 141
XspI CTAG 1 cut(s) 57
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.