Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

77728201 .. 77729649

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00139310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTTGTCCTGTGACTTCTACATTCTTACATGTTATTGCCCTTGTGATTCTTTGGGTTTATGGTATCTCTATATCTTTCAACAGATGATTGGTCTGACAAAGTCAACCTCTGGCACGGCTTTTGTTCAAGGTTTGGACATCAACACTCGAATGAAATGTATACCAGCATGGGAGCTTGTCCATAGCATGAGTAAGCCCCTACTATGGGAAACCCTGACTAGAAGGGAGCATCTGCTTTTTTATGGAAGACTTGAGAATCTCAAAGGTTCTAGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTGTTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCAATTTCACTGATAGGACAGCTATCAGCTACATTTGACTTCACAACCAAGGGAGTTCTTCAGGAAGCTGTCAAGGGACAATTATGGAGATTATGTGATCCCCAAGAGAAGCCACCAGCTGTAATACAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

171

Amino Acids

19.33

Weight (kDa)

9.2

Isoelectric Point (pI)

49.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	26 - 134	9.9e-06	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	160
AclWI	GGATC	1 cut(s)	476
AcuI	CTGAAG	1 cut(s)	428
AfiI	CCNNNNNNNGG	2 cut(s)	204, 205
AflIII	ACRYGT	1 cut(s)	29
AgsI	TTSAA	3 cut(s)	80, 128, 301
AluBI	AGCT	6 cut(s)	175, 344, 406, 413, 452, 503
AluI	AGCT	6 cut(s)	175, 344, 406, 413, 452, 503
AlwI	GGATC	1 cut(s)	476
BbsI	GAAGAC	1 cut(s)	253
BceAI	ACGGC	1 cut(s)	132
BfaI	CTAG	2 cut(s)	219, 270
BlpI	GCTNAGC	1 cut(s)	377
BmsI	GCATC	1 cut(s)	238
BpiI	GAAGAC	1 cut(s)	253
Bpu1102I	GCTNAGC	1 cut(s)	377
BpuEI	CTTGAG	1 cut(s)	272
BsaJI	CCNNGG	1 cut(s)	432
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 205
BseDI	CCNNGG	1 cut(s)	432
BseLI	CCNNNNNNNGG	2 cut(s)	204, 205
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	2 cut(s)	204, 205
BsmFI	GGGAC	1 cut(s)	474
Bsp143I	GATC	1 cut(s)	481
Bsp1720I	GCTNAGC	1 cut(s)	377
BspPI	GGATC	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	432
BssMI	GATC	1 cut(s)	481
BssNAI	GTATAC	1 cut(s)	161
BssT1I	CCWWGG	1 cut(s)	432
Bst1107I	GTATAC	1 cut(s)	161
Bst4CI	ACNGT	1 cut(s)	513
Bst6I	CTCTTC	1 cut(s)	362
BstDEI	CTNAG	1 cut(s)	377
BstKTI	GATC	1 cut(s)	484
BstMBI	GATC	1 cut(s)	481
BstNSI	RCATGY	1 cut(s)	33
BstV2I	GAAGAC	1 cut(s)	253
BstZ17I	GTATAC	1 cut(s)	161
BtsI	GCAGTG	1 cut(s)	291
BtsIMutI	CAGTG	2 cut(s)	291, 392
CseI	GACGC	1 cut(s)	370
CviAII	CATG	4 cut(s)	30, 168, 187, 320
DdeI	CTNAG	1 cut(s)	377
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
Eam1104I	CTCTTC	1 cut(s)	362
EarI	CTCTTC	1 cut(s)	362
Eco130I	CCWWGG	1 cut(s)	432
Eco57I	CTGAAG	1 cut(s)	428
EcoT14I	CCWWGG	1 cut(s)	432
ErhI	CCWWGG	1 cut(s)	432
FaeI	CATG	4 cut(s)	33, 171, 190, 323
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	4 cut(s)	29, 167, 186, 319
FblI	GTMKAC	1 cut(s)	160
FspBI	CTAG	2 cut(s)	219, 270
HgaI	GACGC	1 cut(s)	370
Hin1II	CATG	4 cut(s)	33, 171, 190, 323
HincII	GTYRAC	1 cut(s)	105
HindII	GTYRAC	1 cut(s)	105
HinfI	GANTC	3 cut(s)	47, 256, 293
Hpy166II	GTNNAC	2 cut(s)	105, 161
Hpy188I	TCNGA	1 cut(s)	96
Hpy188III	TCNNGA	2 cut(s)	270, 446
Hpy8I	GTNNAC	2 cut(s)	105, 161
Hpy99I	CGWCG	1 cut(s)	386
HpyAV	CCTTC	2 cut(s)	216, 366
HpyCH4III	ACNGT	1 cut(s)	513
HpyCH4V	TGCA	1 cut(s)	332
HpyF3I	CTNAG	1 cut(s)	377
Hsp92II	CATG	4 cut(s)	33, 171, 190, 323
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	2 cut(s)	172, 226
LpnPI	CCDG	6 cut(s)	22, 96, 177, 227, 330, 431
LweI	GCATC	1 cut(s)	238
MaeI	CTAG	2 cut(s)	219, 270
MaeIII	GTNAC	1 cut(s)	11
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	4 cut(s)	258, 302, 379, 434
MluCI	AATT	2 cut(s)	387, 464
MnlI	CCTC	2 cut(s)	118, 353
MseI	TTAA	1 cut(s)	275
MslI	CAYNNNNRTG	1 cut(s)	149
MspA1I	CMGCKG	1 cut(s)	503
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	4 cut(s)	33, 171, 190, 323
NmuCI	GTSAC	1 cut(s)	11
NspI	RCATGY	1 cut(s)	33
PciI	ACATGT	1 cut(s)	29
PfeI	GAWTC	3 cut(s)	47, 256, 293
PflFI	GACNNNGTC	1 cut(s)	100
PscI	ACATGT	1 cut(s)	29
PsyI	GACNNNGTC	1 cut(s)	100
PvuII	CAGCTG	1 cut(s)	503
RseI	CAYNNNNRTG	1 cut(s)	149
SaqAI	TTAA	1 cut(s)	275
Sau3AI	GATC	1 cut(s)	481
SfaNI	GCATC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	149
SmlI	CTYRAG	1 cut(s)	251
SmoI	CTYRAG	1 cut(s)	251
Sse9I	AATT	2 cut(s)	387, 464
SspMI	CTAG	2 cut(s)	219, 270
StyI	CCWWGG	1 cut(s)	432
TaaI	ACNGT	1 cut(s)	513
TaqI	TCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	387, 464
TfiI	GAWTC	3 cut(s)	47, 256, 293
Tru1I	TTAA	1 cut(s)	275
Tru9I	TTAA	1 cut(s)	275
TscAI	CASTG	2 cut(s)	291, 399
TseFI	GTSAC	1 cut(s)	11
Tsp45I	GTSAC	1 cut(s)	11
TspDTI	ATGAA	3 cut(s)	167, 308, 380
TspRI	CASTG	2 cut(s)	291, 399
Tth111I	GACNNNGTC	1 cut(s)	100
XbaI	TCTAGA	1 cut(s)	269
XceI	RCATGY	1 cut(s)	33
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	2 cut(s)	219, 270

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.