Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

67471783 .. 67475219

Gene Structure 3437 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG415900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 219 bp

ATGGAGCATCTGCTTTATTATGGAAGACTTAAGAACCTCAAAGGTTCTGGATTAAGACAAGTTGTTTTTATGGATGAGCCTAGCACTGGACTCGATCCAGCTTCAAGACATTATCTATACGGTCATTGCAAAGAAAGCAAAGAGTCGCAAAAGACCATTAAGCACAGACCTTCTAATGACAGTGAAGAACAAGAAACTGAAGAGACAGGGTCCTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

72

Amino Acids

8.24

Weight (kDa)

6.05

Isoelectric Point (pI)

63.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	89
AcuI	CTGAAG	1 cut(s)	219
AfiI	CCNNNNNNNGG	1 cut(s)	86
AflII	CTTAAG	1 cut(s)	29
AgsI	TTSAA	1 cut(s)	105
AluBI	AGCT	1 cut(s)	101
AluI	AGCT	1 cut(s)	101
Alw26I	GTCTC	1 cut(s)	197
AlwI	GGATC	1 cut(s)	89
AspS9I	GGNCC	1 cut(s)	210
AvaII	GGWCC	1 cut(s)	210
BbsI	GAAGAC	1 cut(s)	31
BcgI	CGANNNNNNTGC	2 cut(s)	73, 107
BcoDI	GTCTC	1 cut(s)	197
BfaI	CTAG	1 cut(s)	81
BfrI	CTTAAG	1 cut(s)	29
Bme18I	GGWCC	1 cut(s)	210
BmgT120I	GGNCC	1 cut(s)	210
BmiI	GGNNCC	1 cut(s)	211
BmsI	GCATC	1 cut(s)	16
BpiI	GAAGAC	1 cut(s)	31
Bsc4I	CCNNNNNNNGG	1 cut(s)	86
Bse1I	ACTGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	124
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	86
BseMI	GCAATG	1 cut(s)	124
BseNI	ACTGG	1 cut(s)	91
BslI	CCNNNNNNNGG	1 cut(s)	86
BsmAI	GTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	94
BspLI	GGNNCC	1 cut(s)	211
BspPI	GGATC	1 cut(s)	89
BspTI	CTTAAG	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	91
BssMI	GATC	1 cut(s)	94
Bst4CI	ACNGT	2 cut(s)	122, 182
Bst6I	CTCTTC	1 cut(s)	195
BstAFI	CTTAAG	1 cut(s)	29
BstF5I	GGATG	1 cut(s)	79
BstKTI	GATC	1 cut(s)	97
BstMAI	GTCTC	1 cut(s)	197
BstMBI	GATC	1 cut(s)	94
BstMWI	GCNNNNNNNGC	1 cut(s)	135
BstV2I	GAAGAC	1 cut(s)	31
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	2 cut(s)	84, 187
Cfr13I	GGNCC	1 cut(s)	210
CviJI	RGCY	2 cut(s)	79, 101
CviKI_1	RGCY	2 cut(s)	79, 101
DpnI	GATC	1 cut(s)	96
DpnII	GATC	1 cut(s)	94
Eam1104I	CTCTTC	1 cut(s)	195
EarI	CTCTTC	1 cut(s)	195
Eco47I	GGWCC	1 cut(s)	210
Eco57I	CTGAAG	1 cut(s)	219
EcoO109I	RGGNCCY	1 cut(s)	210
FaiI	YATR	3 cut(s)	21, 71, 118
FokI	GGATG	1 cut(s)	86
FspBI	CTAG	1 cut(s)	81
HinfI	GANTC	2 cut(s)	90, 143
Hpy188III	TCNNGA	2 cut(s)	48, 105
HpyAV	CCTTC	1 cut(s)	180
HpyCH4III	ACNGT	2 cut(s)	122, 182
HpyCH4V	TGCA	1 cut(s)	129
HpyF10VI	GCNNNNNNNGC	1 cut(s)	135
Kzo9I	GATC	1 cut(s)	94
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	4 cut(s)	33, 72, 111, 192
LweI	GCATC	1 cut(s)	16
MaeI	CTAG	1 cut(s)	81
MalI	GATC	1 cut(s)	96
MboI	GATC	1 cut(s)	94
MboII	GAAGA	3 cut(s)	36, 197, 212
MlyI	GAGTC	2 cut(s)	84, 152
MnlI	CCTC	1 cut(s)	47
MseI	TTAA	3 cut(s)	30, 53, 159
MspCI	CTTAAG	1 cut(s)	29
MwoI	GCNNNNNNNGC	1 cut(s)	135
NdeII	GATC	1 cut(s)	94
NlaIV	GGNNCC	1 cut(s)	211
PflFI	GACNNNGTC	1 cut(s)	208
PleI	GAGTC	2 cut(s)	84, 151
PpsI	GAGTC	2 cut(s)	84, 151
PpuMI	RGGWCCY	1 cut(s)	210
Psp5II	RGGWCCY	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	211
PspPI	GGNCC	1 cut(s)	210
PspPPI	RGGWCCY	1 cut(s)	210
PsyI	GACNNNGTC	1 cut(s)	208
SaqAI	TTAA	3 cut(s)	30, 53, 159
Sau3AI	GATC	1 cut(s)	94
Sau96I	GGNCC	1 cut(s)	210
SchI	GAGTC	2 cut(s)	84, 152
SetI	ASST	4 cut(s)	39, 46, 103, 172
SfaNI	GCATC	1 cut(s)	16
SgeI	CNNG	8 cut(s)	60, 71, 93, 99, 104, 110, 117, 203
SinI	GGWCC	1 cut(s)	210
SmlI	CTYRAG	1 cut(s)	29
SmoI	CTYRAG	1 cut(s)	29
SspMI	CTAG	1 cut(s)	81
TaaI	ACNGT	2 cut(s)	122, 182
TaqI	TCGA	1 cut(s)	93
Tru1I	TTAA	3 cut(s)	30, 53, 159
Tru9I	TTAA	3 cut(s)	30, 53, 159
TscAI	CASTG	2 cut(s)	91, 187
TspRI	CASTG	2 cut(s)	91, 187
Tth111I	GACNNNGTC	1 cut(s)	208
Vha464I	CTTAAG	1 cut(s)	29
VpaK11BI	GGWCC	1 cut(s)	210
XspI	CTAG	1 cut(s)	81

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.