Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Reverse (-)

33378512 .. 33400417

Gene Structure 21906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG310900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 489 bp

ATGGATGAATTTTTCACATGCAAGCTAGTGATTCAGAATAATCATGTACAAGACAAGGGAAAACAAGTGGTGGTTGAAACTGAAGATGTTCCAACAACTGTAGCTAGAATCTCAAAGTTTGTAAAAGTCTCCAAGAAAAGTGTGGTTGCAACTCCTCTTCAAAGACAAGTGCAGAGACTCAAGGCTTACCGAGTTTTGATGAAGGCTGATCTTGATGGCGAAGTTAAAACTGTCCGACTATGGGAAACCCTAACTGGAAGGGAGCATCTGCTTTTTTATGGAAGACTTAAGAACCTCAAAGGTTCTGGATTAAGACAAGCAGTGGAAGAATTTTGTTTCTTTGCAATTTCACTGATAGGTGATCCTAAAGTTGTTTTTATGGATGAGCCTAGCACTGGACTCGATCCAGCTTCAAGACATAATCTGCACGGGCAAAACAAGATTATAGCCACAGACAGTATAATAAGTTGGATTGATGGCACAGGATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

162

Amino Acids

18.23

Weight (kDa)

9.12

Isoelectric Point (pI)

24.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	356, 398
AcsI	RAATTY	2 cut(s)	8, 329
AcuI	CTGAAG	1 cut(s)	102
AfaI	GTAC	1 cut(s)	48
AfiI	CCNNNNNNNGG	2 cut(s)	241, 395
AflII	CTTAAG	1 cut(s)	287
AgsI	TTSAA	3 cut(s)	77, 161, 414
AluBI	AGCT	3 cut(s)	25, 104, 410
AluI	AGCT	3 cut(s)	25, 104, 410
Alw26I	GTCTC	2 cut(s)	133, 169
AlwI	GGATC	2 cut(s)	356, 398
ApoI	RAATTY	2 cut(s)	8, 329
Asp700I	GAANNNNTTC	1 cut(s)	87
AsuHPI	GGTGA	1 cut(s)	371
BbsI	GAAGAC	1 cut(s)	289
BccI	CCATC	2 cut(s)	209, 470
BcgI	CGANNNNNNTGC	2 cut(s)	382, 416
BcoDI	GTCTC	2 cut(s)	133, 169
BfaI	CTAG	3 cut(s)	26, 105, 390
BfmI	CTRYAG	1 cut(s)	99
BfrI	CTTAAG	1 cut(s)	287
BmsI	GCATC	1 cut(s)	274
BpiI	GAAGAC	1 cut(s)	289
BpuEI	CTTGAG	1 cut(s)	164
Bsc4I	CCNNNNNNNGG	2 cut(s)	241, 395
Bse1I	ACTGG	2 cut(s)	259, 400
BseGI	GGATG	2 cut(s)	10, 388
BseLI	CCNNNNNNNGG	2 cut(s)	241, 395
BseNI	ACTGG	2 cut(s)	259, 400
BseRI	GAGGAG	1 cut(s)	144
BsgI	GTGCAG	2 cut(s)	191, 410
BslI	CCNNNNNNNGG	2 cut(s)	241, 395
BsmAI	GTCTC	2 cut(s)	133, 169
Bsp1407I	TGTACA	1 cut(s)	46
Bsp143I	GATC	3 cut(s)	208, 361, 403
BspPI	GGATC	2 cut(s)	356, 398
BspTI	CTTAAG	1 cut(s)	287
BsrGI	TGTACA	1 cut(s)	46
BsrI	ACTGG	2 cut(s)	259, 400
BssMI	GATC	3 cut(s)	208, 361, 403
Bst4CI	ACNGT	3 cut(s)	100, 232, 458
Bst6I	CTCTTC	1 cut(s)	162
BstAFI	CTTAAG	1 cut(s)	287
BstAUI	TGTACA	1 cut(s)	46
BstC8I	GCNNGC	1 cut(s)	23
BstF5I	GGATG	2 cut(s)	10, 388
BstKTI	GATC	3 cut(s)	211, 364, 406
BstMAI	GTCTC	2 cut(s)	133, 169
BstMBI	GATC	3 cut(s)	208, 361, 403
BstNSI	RCATGY	1 cut(s)	21
BstSFI	CTRYAG	1 cut(s)	99
BstV2I	GAAGAC	1 cut(s)	289
BtsCI	GGATG	2 cut(s)	10, 388
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	3 cut(s)	327, 350, 393
Cac8I	GCNNGC	1 cut(s)	23
Csp6I	GTAC	1 cut(s)	47
CviAII	CATG	2 cut(s)	18, 44
CviJI	RGCY	7 cut(s)	25, 104, 185, 206, 388, 410, 449
CviKI_1	RGCY	7 cut(s)	25, 104, 185, 206, 388, 410, 449
CviQI	GTAC	1 cut(s)	47
DpnI	GATC	3 cut(s)	210, 363, 405
DpnII	GATC	3 cut(s)	208, 361, 403
Eam1104I	CTCTTC	1 cut(s)	162
EarI	CTCTTC	1 cut(s)	162
Eco57I	CTGAAG	1 cut(s)	102
FaeI	CATG	2 cut(s)	21, 47
FaiI	YATR	8 cut(s)	19, 45, 241, 279, 380, 420, 446, 461
FatI	CATG	2 cut(s)	17, 43
FokI	GGATG	2 cut(s)	17, 395
FspBI	CTAG	3 cut(s)	26, 105, 390
Hin1II	CATG	2 cut(s)	21, 47
HinfI	GANTC	4 cut(s)	31, 108, 177, 399
HphI	GGTGA	1 cut(s)	371
Hpy188I	TCNGA	2 cut(s)	36, 236
Hpy188III	TCNNGA	3 cut(s)	212, 306, 414
HpyAV	CCTTC	2 cut(s)	196, 252
HpyCH4III	ACNGT	3 cut(s)	100, 232, 458
HpyCH4V	TGCA	5 cut(s)	21, 149, 172, 344, 427
Hsp92II	CATG	2 cut(s)	21, 47
Kzo9I	GATC	3 cut(s)	208, 361, 403
LmnI	GCTCC	1 cut(s)	262
LpnPI	CCDG	5 cut(s)	240, 291, 381, 420, 468
LweI	GCATC	1 cut(s)	274
MaeI	CTAG	3 cut(s)	26, 105, 390
MalI	GATC	3 cut(s)	210, 363, 405
MboI	GATC	3 cut(s)	208, 361, 403
MboII	GAAGA	4 cut(s)	95, 149, 294, 338
MluCI	AATT	3 cut(s)	8, 329, 345
MlyI	GAGTC	2 cut(s)	171, 393
MmeI	TCCRAC	3 cut(s)	116, 259, 449
MnlI	CCTC	2 cut(s)	165, 305
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	3 cut(s)	225, 288, 311
MspCI	CTTAAG	1 cut(s)	287
NdeII	GATC	3 cut(s)	208, 361, 403
NlaIII	CATG	2 cut(s)	21, 47
NspI	RCATGY	1 cut(s)	21
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	2 cut(s)	31, 108
PleI	GAGTC	2 cut(s)	171, 393
PpsI	GAGTC	2 cut(s)	171, 393
RsaI	GTAC	1 cut(s)	48
RsaNI	GTAC	1 cut(s)	47
SaqAI	TTAA	3 cut(s)	225, 288, 311
Sau3AI	GATC	3 cut(s)	208, 361, 403
SchI	GAGTC	2 cut(s)	171, 393
SetI	ASST	6 cut(s)	27, 106, 297, 304, 361, 412
SfaNI	GCATC	1 cut(s)	274
SfcI	CTRYAG	1 cut(s)	99
SmlI	CTYRAG	2 cut(s)	179, 287
SmoI	CTYRAG	2 cut(s)	179, 287
Sse9I	AATT	3 cut(s)	8, 329, 345
SspMI	CTAG	3 cut(s)	26, 105, 390
TaaI	ACNGT	3 cut(s)	100, 232, 458
TaqI	TCGA	1 cut(s)	402
TasI	AATT	3 cut(s)	8, 329, 345
TatI	WGTACW	1 cut(s)	46
TfiI	GAWTC	2 cut(s)	31, 108
Tru1I	TTAA	3 cut(s)	225, 288, 311
Tru9I	TTAA	3 cut(s)	225, 288, 311
TscAI	CASTG	3 cut(s)	327, 357, 400
TspDTI	ATGAA	2 cut(s)	21, 215
TspRI	CASTG	3 cut(s)	327, 357, 400
Vha464I	CTTAAG	1 cut(s)	287
XapI	RAATTY	2 cut(s)	8, 329
XceI	RCATGY	1 cut(s)	21
XcmI	CCANNNNNNNNNTGG	1 cut(s)	139
XmnI	GAANNNNTTC	1 cut(s)	87
XspI	CTAG	3 cut(s)	26, 105, 390

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.