Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr1

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Forward (+)

16786892 .. 16788215

Gene Structure 1324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000001522

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGAGAAAGTCAACAAGTTGCTACTGGAACCAGATACAAGTCATGCAATTATTTACAACAATCTCAAAAAGGTTTATCCTGGAAGAGATGGAAACCCTGAGAAATTTGCCGTGAGAGGGATGTCTCTTGCTTTGTCTCAAGGGGAGTGCTTTGGGATGCTTGGCCCCAACGGTGCTGGGAAGACCTCTTTTATTAATATGATGATTGGTCTGACAAAGTCAACCTCTGGCACGGCTTTTGTTCAAGGTCTGGACATCAACACTCAGATGGATGAAATATATACCAGCATGGGAGAAACCCTGACCGGAGGGGAGCATCTACTTTTTTATGGAAGACTTAAGAACCTCAAAAGTTCTGGATTAAGACAAGCAGTGGAAGAATCTTTGAAAAGTGTCAATCTGTTTCATGGTAGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTTGCAATTTCACTGATAGGTGATCCCAAATTGTTTACATGGATGAGCCTACCACTGGACTTGATCCAGCTTCAAGACATAATCTATGGACTGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

189

Amino Acids

20.61

Weight (kDa)

9.3

Isoelectric Point (pI)

27.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ABC_tran	PF00005	39 - 168	2e-18	ABC transporter

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	485, 526
AcsI	RAATTY	1 cut(s)	104
AfiI	CCNNNNNNNGG	2 cut(s)	117, 523
AflII	CTTAAG	1 cut(s)	338
AgsI	TTSAA	3 cut(s)	245, 388, 542
AjnI	CCWGG	1 cut(s)	79
AluBI	AGCT	2 cut(s)	431, 538
AluI	AGCT	2 cut(s)	431, 538
Alw26I	GTCTC	2 cut(s)	129, 141
AlwI	GGATC	2 cut(s)	485, 526
AoxI	GGCC	1 cut(s)	163
ApoI	RAATTY	1 cut(s)	104
AseI	ATTAAT	1 cut(s)	195
AspS9I	GGNCC	1 cut(s)	164
AsuHPI	GGTGA	1 cut(s)	500
BbsI	GAAGAC	2 cut(s)	188, 340
BccI	CCATC	2 cut(s)	83, 262
BceAI	ACGGC	2 cut(s)	95, 249
BciT130I	CCWGG	1 cut(s)	81
BcoDI	GTCTC	2 cut(s)	129, 141
BfrI	CTTAAG	1 cut(s)	338
BlpI	GCTNAGC	1 cut(s)	464
Bme1390I	CCNGG	1 cut(s)	81
BmgT120I	GGNCC	1 cut(s)	164
BmiI	GGNNCC	2 cut(s)	30, 166
BmrFI	CCNGG	1 cut(s)	81
BmsI	GCATC	2 cut(s)	147, 325
BpiI	GAAGAC	2 cut(s)	188, 340
Bpu1102I	GCTNAGC	1 cut(s)	464
BpuEI	CTTGAG	1 cut(s)	123
BsaWI	WCCGGW	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	2 cut(s)	117, 523
Bse1I	ACTGG	2 cut(s)	30, 528
BseBI	CCWGG	1 cut(s)	81
BseGI	GGATG	4 cut(s)	126, 162, 277, 516
BseLI	CCNNNNNNNGG	2 cut(s)	117, 523
BseMII	CTCAG	2 cut(s)	90, 278
BseNI	ACTGG	2 cut(s)	30, 528
BseYI	CCCAGC	1 cut(s)	176
BshFI	GGCC	1 cut(s)	165
BsiSI	CCGG	1 cut(s)	306
BslI	CCNNNNNNNGG	2 cut(s)	117, 523
BsmAI	GTCTC	2 cut(s)	129, 141
BsnI	GGCC	1 cut(s)	165
Bsp143I	GATC	2 cut(s)	490, 531
Bsp1720I	GCTNAGC	1 cut(s)	464
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	2 cut(s)	91, 277
BspLI	GGNNCC	2 cut(s)	30, 166
BspPI	GGATC	2 cut(s)	485, 526
BspTI	CTTAAG	1 cut(s)	338
BsrI	ACTGG	2 cut(s)	30, 528
BssMI	GATC	2 cut(s)	490, 531
Bst2UI	CCWGG	1 cut(s)	81
Bst4CI	ACNGT	2 cut(s)	173, 561
Bst6I	CTCTTC	2 cut(s)	79, 449
BstAFI	CTTAAG	1 cut(s)	338
BstDEI	CTNAG	3 cut(s)	99, 264, 464
BstF5I	GGATG	4 cut(s)	126, 162, 277, 516
BstKTI	GATC	2 cut(s)	493, 534
BstMAI	GTCTC	2 cut(s)	129, 141
BstMBI	GATC	2 cut(s)	490, 531
BstNI	CCWGG	1 cut(s)	81
BstSCI	CCNGG	1 cut(s)	79
BstV2I	GAAGAC	2 cut(s)	188, 340
BsuRI	GGCC	1 cut(s)	165
BtsCI	GGATG	4 cut(s)	126, 162, 277, 516
BtsI	GCAGTG	1 cut(s)	378
BtsIMutI	CAGTG	3 cut(s)	378, 479, 521
Cfr13I	GGNCC	1 cut(s)	164
CspCI	CAANNNNNGTGG	2 cut(s)	510, 545
CviAII	CATG	4 cut(s)	44, 289, 407, 507
CviJI	RGCY	6 cut(s)	165, 236, 431, 463, 516, 538
CviKI_1	RGCY	6 cut(s)	165, 236, 431, 463, 516, 538
DdeI	CTNAG	3 cut(s)	99, 264, 464
DpnI	GATC	2 cut(s)	492, 533
DpnII	GATC	2 cut(s)	490, 531
Eam1104I	CTCTTC	2 cut(s)	79, 449
EarI	CTCTTC	2 cut(s)	79, 449
EcoRII	CCWGG	1 cut(s)	79
FaeI	CATG	4 cut(s)	47, 292, 410, 510
FatI	CATG	4 cut(s)	43, 288, 406, 506
FokI	GGATG	4 cut(s)	133, 169, 284, 523
GsaI	CCCAGC	1 cut(s)	180
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	1 cut(s)	306
Hin1II	CATG	4 cut(s)	47, 292, 410, 510
HincII	GTYRAC	2 cut(s)	13, 222
HindII	GTYRAC	2 cut(s)	13, 222
HinfI	GANTC	1 cut(s)	380
HpaII	CCGG	1 cut(s)	306
HphI	GGTGA	1 cut(s)	500
Hpy166II	GTNNAC	3 cut(s)	13, 222, 504
Hpy188I	TCNGA	2 cut(s)	213, 267
Hpy188III	TCNNGA	3 cut(s)	251, 357, 542
Hpy8I	GTNNAC	3 cut(s)	13, 222, 504
HpyAV	CCTTC	1 cut(s)	453
HpyCH4III	ACNGT	2 cut(s)	173, 561
HpyCH4V	TGCA	3 cut(s)	47, 419, 473
HpyF3I	CTNAG	3 cut(s)	99, 264, 464
Hsp92II	CATG	4 cut(s)	47, 292, 410, 510
Kzo9I	GATC	2 cut(s)	490, 531
LmnI	GCTCC	1 cut(s)	313
LweI	GCATC	2 cut(s)	147, 325
MalI	GATC	2 cut(s)	492, 533
MboI	GATC	2 cut(s)	490, 531
MboII	GAAGA	5 cut(s)	96, 193, 345, 389, 466
MluCI	AATT	4 cut(s)	48, 104, 474, 497
MnlI	CCTC	6 cut(s)	110, 196, 235, 302, 356, 440
MseI	TTAA	3 cut(s)	195, 339, 362
MslI	CAYNNNNRTG	1 cut(s)	266
MspCI	CTTAAG	1 cut(s)	338
MspI	CCGG	1 cut(s)	306
MspR9I	CCNGG	1 cut(s)	81
MvaI	CCWGG	1 cut(s)	81
NdeII	GATC	2 cut(s)	490, 531
NlaIII	CATG	4 cut(s)	47, 292, 410, 510
NlaIV	GGNNCC	2 cut(s)	30, 166
PfeI	GAWTC	1 cut(s)	380
PflFI	GACNNNGTC	1 cut(s)	217
PfoI	TCCNGGA	1 cut(s)	79
PshBI	ATTAAT	1 cut(s)	195
Psp6I	CCWGG	1 cut(s)	79
PspFI	CCCAGC	1 cut(s)	176
PspGI	CCWGG	1 cut(s)	79
PspN4I	GGNNCC	2 cut(s)	30, 166
PspPI	GGNCC	1 cut(s)	164
PsyI	GACNNNGTC	1 cut(s)	217
RseI	CAYNNNNRTG	1 cut(s)	266
SaqAI	TTAA	3 cut(s)	195, 339, 362
Sau3AI	GATC	2 cut(s)	490, 531
Sau96I	GGNCC	1 cut(s)	164
ScrFI	CCNGG	1 cut(s)	81
SetI	ASST	9 cut(s)	75, 188, 227, 250, 348, 433, 451, 490, 540
SfaNI	GCATC	2 cut(s)	147, 325
SmiMI	CAYNNNNRTG	1 cut(s)	266
SmlI	CTYRAG	2 cut(s)	138, 338
SmoI	CTYRAG	2 cut(s)	138, 338
Sse9I	AATT	4 cut(s)	48, 104, 474, 497
StyD4I	CCNGG	1 cut(s)	79
TaaI	ACNGT	2 cut(s)	173, 561
TasI	AATT	4 cut(s)	48, 104, 474, 497
TfiI	GAWTC	1 cut(s)	380
Tru1I	TTAA	3 cut(s)	195, 339, 362
Tru9I	TTAA	3 cut(s)	195, 339, 362
TscAI	CASTG	3 cut(s)	378, 486, 528
TspDTI	ATGAA	3 cut(s)	288, 395, 467
TspRI	CASTG	3 cut(s)	378, 486, 528
Tth111I	GACNNNGTC	1 cut(s)	217
Vha464I	CTTAAG	1 cut(s)	338
VspI	ATTAAT	1 cut(s)	195
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.