Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005930

Physical Location & Seq

Genomic Coordinates Forward (+)

7383176 .. 7434560

Gene Structure 51385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG052800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1155 bp

ATGGCTCACACAATTGCTCGCGCCACTCTGGGCCTCACTCAGATTTCTGCGGTCTTTGAAGCCCCAAAGGTTGGAGTGGTGTCGAAGAGTGAGGCTATTCGAATGGTCGATGAGGCAGACCTTGATTTGATGGAGAAAGTCAACAAGTTGCTACTGGAACCGGATACAAGTCATGCAATTAGTTGTAACAATCTCAAAAAGGTTTATCCTGGAAGAGATGGAAACCCTGAGAAATTTGCCGTGAGAGGGATGTCTCTTGCTTTGTCTCAAGGGGAGTGCTTTGGTATGCTTAGCCCTAGTGGTGCTGGGAAGACCTCTTTTATTAATATGGCAGTGGAAGAATCTTTGAAAAGTTTCAATCTGTTTCATGGTGGGGTTGCAGACAAAAGAGCTGGAAAGTATAGTGGAGGTATGAAGAGAAGGCTTAGCGTCGCAATTTCACTGATAGGTGATCCTAAACTTCTGGCTCTTCATAAATTTCAGCCAAAGAGACGAACTGCCTATATTGGACTACCGTTCAGAGAATCCAAACCTATCATATCCACCATCAAAAACGCTCTAGTTATGTATAAGCATCGTGTCCCCGTTGAGAACGATGATACCTATATGATGAGCACAACACGAGGTACGAACTATGATTTCGAAAGTGCTGAGGAGCAAGGGCGAGATGGTTCATCGAAAACTGTAGATGCACTTTCAACCAAGAAAAAATTGAAAATTGCACTTCTTTCCGTTTCATTGTGGAACAAGCTATTCCTAATCGCATGTGTGATTGCAGTCTCATTAGACCCCTTGTTCTTTTACATTCCAATCATCAATGAAGATGAAAAGTGTCTTGGAATAGACAAAGAGTTGAGGACTATAGCTCTCATTTTGCGATCCCTCAGTGATATCATTTTCATAGTGCATATTGTATATCAAATTTGCGAAGCTACTATGGCGGCCTACAAAGTACACATAAAAGGAAAGTCGGAATTGGAATTGGATTGGTCATATTCGAAGATATCAATGGGTGAGATAATTCCATTTGCTAATTTAGTTGCTGGGAAGCTAGCATGGCGCTCCACGCTAACTGATATTTTGGCTGTTCTTCCCATGCCACAACGCCAGGTAAAGTCATGTATCTGGCGTGCGCAATTGGAATCAAAAAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005886 GO:0005911 GO:0006810 GO:0006869 GO:0008150 GO:0009506 GO:0010876 GO:0015399 GO:0015405 GO:0016020 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0022804 GO:0022857 GO:0030054 GO:0033036 GO:0042623 GO:0042626 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043492 GO:0044424 GO:0044464 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071702 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ABC2_membrane_3 ABC_tran

Protein Analysis

384

Amino Acids

42.58

Weight (kDa)

9.28

Isoelectric Point (pI)

40.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005930)

Species	Orthologous Gene IDs
malus_domestica	MD16G1216100.v1.1
pyrus_communis	pycom14g06430 pycom16g18080
rosa_chinensis	RchiOBHm_Chr3g0487131 RchiOBHm_Chr4g0412641 RchiOBHm_Chr5g0058341 RchiOBHm_Chr5g0061621
rosa_laevigata	RLG00000001522
rosa_multiflora	Rmu_sc0002038.1_g000037
rosa_roxburghii	Rroxscaffold_1G00038640 Rroxscaffold_2G00139310 Rroxscaffold_4G00315150
rosa_rugosa	Rorug02G0030000 Rorug05G0189900 Rorug05G0394900 Rorug07G0289500
rosa_samantha	Rh1BG052800 Rh1BG158300 Rh1CG064600 Rh1DG068800 Rh3AG279600 Rh3BG374600 Rh3DG310900 Rh5AG401500 Rh5AG403700 Rh5BG415900 Rh5BG416000 Rh5CG273000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	1134
AccB7I	CCANNNNNTGG	1 cut(s)	71
AccII	CGCG	1 cut(s)	21
AciI	CCGC	2 cut(s)	50, 941
AclWI	GGATC	2 cut(s)	446, 873
AcsI	RAATTY	3 cut(s)	233, 476, 921
AfaI	GTAC	2 cut(s)	628, 954
AfiI	CCNNNNNNNGG	2 cut(s)	71, 246
AgsI	TTSAA	5 cut(s)	59, 349, 358, 699, 715
AjnI	CCWGG	2 cut(s)	208, 1107
AjuI	GAANNNNNNNTTGG	2 cut(s)	819, 851
AluBI	AGCT	5 cut(s)	392, 751, 866, 932, 1051
AluI	AGCT	5 cut(s)	392, 751, 866, 932, 1051
Alw21I	GWGCWC	1 cut(s)	617
Alw26I	GTCTC	4 cut(s)	258, 270, 484, 784
AlwI	GGATC	2 cut(s)	446, 873
AoxI	GGCC	2 cut(s)	31, 942
ApoI	RAATTY	3 cut(s)	233, 476, 921
AseI	ATTAAT	1 cut(s)	324
Asp700I	GAANNNNTTC	1 cut(s)	353
AspLEI	GCGC	3 cut(s)	23, 1062, 1135
AspS9I	GGNCC	1 cut(s)	31
AsuHPI	GGTGA	2 cut(s)	461, 1025
AsuII	TTCGAA	3 cut(s)	100, 642, 998
AsuNHI	GCTAGC	1 cut(s)	1051
BauI	CACGAG	1 cut(s)	621
BbsI	GAAGAC	1 cut(s)	317
Bbv12I	GWGCWC	1 cut(s)	617
BbvCI	CCTCAGC	1 cut(s)	651
BccI	CCATC	4 cut(s)	124, 212, 554, 662
BceAI	ACGGC	1 cut(s)	224
BciT130I	CCWGG	2 cut(s)	210, 1109
BciVI	GTATCC	1 cut(s)	157
BcoDI	GTCTC	4 cut(s)	258, 270, 484, 784
BfaI	CTAG	3 cut(s)	297, 560, 1052
BfmI	CTRYAG	2 cut(s)	684, 861
BfoI	RGCGCY	1 cut(s)	1063
BfuI	GTATCC	1 cut(s)	157
BisI	GCNGC	1 cut(s)	942
BlpI	GCTNAGC	2 cut(s)	290, 425
BlsI	GCNGC	1 cut(s)	943
Bme1390I	CCNGG	2 cut(s)	210, 1109
BmgT120I	GGNCC	1 cut(s)	31
BmiI	GGNNCC	1 cut(s)	159
BmrFI	CCNGG	2 cut(s)	210, 1109
BmsI	GCATC	2 cut(s)	583, 679
BmtI	GCTAGC	1 cut(s)	1055
BpiI	GAAGAC	1 cut(s)	317
Bpu10I	CCTNAGC	1 cut(s)	651
Bpu1102I	GCTNAGC	2 cut(s)	290, 425
Bpu14I	TTCGAA	3 cut(s)	100, 642, 998
BpuEI	CTTGAG	1 cut(s)	252
BsaWI	WCCGGW	1 cut(s)	160
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 246
Bse1I	ACTGG	1 cut(s)	159
BseBI	CCWGG	2 cut(s)	210, 1109
BseGI	GGATG	1 cut(s)	255
BseLI	CCNNNNNNNGG	2 cut(s)	71, 246
BseMII	CTCAG	4 cut(s)	53, 219, 642, 898
BseNI	ACTGG	1 cut(s)	159
BseRI	GAGGAG	1 cut(s)	668
BseYI	CCCAGC	2 cut(s)	305, 1043
Bsh1236I	CGCG	1 cut(s)	21
BshFI	GGCC	2 cut(s)	33, 944
BsiHKAI	GWGCWC	1 cut(s)	617
BsiSI	CCGG	1 cut(s)	161
BslFI	GGGAC	1 cut(s)	566
BslI	CCNNNNNNNGG	2 cut(s)	71, 246
BsmAI	GTCTC	4 cut(s)	258, 270, 484, 784
BsmBI	CGTCTC	1 cut(s)	484
BsmFI	GGGAC	1 cut(s)	566
BsnI	GGCC	2 cut(s)	33, 944
Bsp119I	TTCGAA	3 cut(s)	100, 642, 998
Bsp1286I	GDGCHC	1 cut(s)	617
Bsp143I	GATC	2 cut(s)	451, 878
Bsp1720I	GCTNAGC	2 cut(s)	290, 425
BspACI	CCGC	2 cut(s)	50, 941
BspANI	GGCC	2 cut(s)	33, 944
BspCNI	CTCAG	4 cut(s)	52, 220, 643, 897
BspFNI	CGCG	1 cut(s)	21
BspLI	GGNNCC	1 cut(s)	159
BspOI	GCTAGC	1 cut(s)	1055
BspPI	GGATC	2 cut(s)	446, 873
BspQI	GCTCTTC	1 cut(s)	474
BspT104I	TTCGAA	3 cut(s)	100, 642, 998
BsrI	ACTGG	1 cut(s)	159
BssMI	GATC	2 cut(s)	451, 878
BssSI	CACGAG	1 cut(s)	621
Bst2BI	CACGAG	1 cut(s)	621
Bst2UI	CCWGG	2 cut(s)	210, 1109
Bst4CI	ACNGT	2 cut(s)	516, 685
Bst6I	CTCTTC	4 cut(s)	80, 208, 410, 474
BstBI	TTCGAA	3 cut(s)	100, 642, 998
BstC8I	GCNNGC	3 cut(s)	19, 1053, 1131
BstDEI	CTNAG	6 cut(s)	39, 228, 290, 425, 651, 884
BstF5I	GGATG	1 cut(s)	255
BstFNI	CGCG	1 cut(s)	21
BstH2I	RGCGCY	1 cut(s)	1063
BstHHI	GCGC	3 cut(s)	23, 1062, 1135
BstKTI	GATC	2 cut(s)	454, 881
BstMAI	GTCTC	4 cut(s)	258, 270, 484, 784
BstMBI	GATC	2 cut(s)	451, 878
BstMWI	GCNNNNNNNGC	3 cut(s)	938, 1057, 1066
BstNI	CCWGG	2 cut(s)	210, 1109
BstNSI	RCATGY	1 cut(s)	768
BstSCI	CCNGG	2 cut(s)	208, 1107
BstSFI	CTRYAG	2 cut(s)	684, 861
BstUI	CGCG	1 cut(s)	21
BstV2I	GAAGAC	1 cut(s)	317
BsuI	GTATCC	1 cut(s)	157
BsuRI	GGCC	2 cut(s)	33, 944
BtsCI	GGATG	1 cut(s)	255
BtsI	GCAGTG	1 cut(s)	339
BtsIMutI	CAGTG	3 cut(s)	339, 440, 892
Cac8I	GCNNGC	3 cut(s)	19, 1053, 1131
CfoI	GCGC	3 cut(s)	23, 1062, 1135
Cfr13I	GGNCC	1 cut(s)	31
CseI	GACGC	1 cut(s)	418
Csp6I	GTAC	2 cut(s)	627, 953
CviAII	CATG	6 cut(s)	173, 368, 765, 1056, 1096, 1119
CviQI	GTAC	2 cut(s)	627, 953
DdeI	CTNAG	6 cut(s)	39, 228, 290, 425, 651, 884
DpnI	GATC	2 cut(s)	453, 880
DpnII	GATC	2 cut(s)	451, 878
Eam1104I	CTCTTC	4 cut(s)	80, 208, 410, 474
EarI	CTCTTC	4 cut(s)	80, 208, 410, 474
Eco32I	GATATC	2 cut(s)	892, 1005
EcoRII	CCWGG	2 cut(s)	208, 1107
EcoRV	GATATC	2 cut(s)	892, 1005
Esp3I	CGTCTC	1 cut(s)	484
FaeI	CATG	6 cut(s)	176, 371, 768, 1059, 1099, 1122
FaqI	GGGAC	1 cut(s)	566
FatI	CATG	6 cut(s)	172, 367, 764, 1055, 1095, 1118
Fnu4HI	GCNGC	1 cut(s)	942
FokI	GGATG	1 cut(s)	262
Fsp4HI	GCNGC	1 cut(s)	942
FspBI	CTAG	3 cut(s)	297, 560, 1052
FspI	TGCGCA	1 cut(s)	1134
GlaI	GCGC	3 cut(s)	22, 1061, 1134
GluI	GCNGC	1 cut(s)	942
GsaI	CCCAGC	2 cut(s)	309, 1047
HaeII	RGCGCY	1 cut(s)	1063
HaeIII	GGCC	2 cut(s)	33, 944
HapII	CCGG	1 cut(s)	161
HgaI	GACGC	1 cut(s)	418
HhaI	GCGC	3 cut(s)	23, 1062, 1135
Hin1II	CATG	6 cut(s)	176, 371, 768, 1059, 1099, 1122
Hin6I	GCGC	3 cut(s)	21, 1060, 1133
HinP1I	GCGC	3 cut(s)	21, 1060, 1133
HincII	GTYRAC	1 cut(s)	142
HindII	GTYRAC	1 cut(s)	142
HinfI	GANTC	3 cut(s)	341, 524, 1142
HpaII	CCGG	1 cut(s)	161
HphI	GGTGA	2 cut(s)	461, 1025
Hpy166II	GTNNAC	2 cut(s)	142, 955
Hpy188I	TCNGA	3 cut(s)	42, 521, 973
Hpy8I	GTNNAC	2 cut(s)	142, 955
Hpy99I	CGWCG	1 cut(s)	434
HpyAV	CCTTC	1 cut(s)	414
HpyCH4III	ACNGT	2 cut(s)	516, 685
HpyCH4V	TGCA	6 cut(s)	176, 380, 692, 722, 776, 907
HpyF10VI	GCNNNNNNNGC	3 cut(s)	938, 1057, 1066
HpyF3I	CTNAG	6 cut(s)	39, 228, 290, 425, 651, 884
Hsp92II	CATG	6 cut(s)	176, 371, 768, 1059, 1099, 1122
HspAI	GCGC	3 cut(s)	21, 1060, 1133
Kzo9I	GATC	2 cut(s)	451, 878
LguI	GCTCTTC	1 cut(s)	474
LmnI	GCTCC	2 cut(s)	655, 1067
LweI	GCATC	2 cut(s)	583, 679
MaeI	CTAG	3 cut(s)	297, 560, 1052
MaeIII	GTNAC	1 cut(s)	185
MalI	GATC	2 cut(s)	453, 880
MboI	GATC	2 cut(s)	451, 878
MboII	GAAGA	9 cut(s)	97, 225, 322, 350, 427, 461, 833, 1012, 1082
MfeI	CAATTG	2 cut(s)	12, 1136
MhlI	GDGCHC	1 cut(s)	617
MmeI	TCCRAC	2 cut(s)	52, 951
MroXI	GAANNNNTTC	1 cut(s)	353
MseI	TTAA	1 cut(s)	324
MspI	CCGG	1 cut(s)	161
MspR9I	CCNGG	2 cut(s)	210, 1109
MunI	CAATTG	2 cut(s)	12, 1136
MvaI	CCWGG	2 cut(s)	210, 1109
MvnI	CGCG	1 cut(s)	21
MwoI	GCNNNNNNNGC	3 cut(s)	938, 1057, 1066
NdeII	GATC	2 cut(s)	451, 878
NheI	GCTAGC	1 cut(s)	1051
NlaIII	CATG	6 cut(s)	176, 371, 768, 1059, 1099, 1122
NlaIV	GGNNCC	1 cut(s)	159
NsbI	TGCGCA	1 cut(s)	1134
NspI	RCATGY	1 cut(s)	768
NspV	TTCGAA	3 cut(s)	100, 642, 998
PciSI	GCTCTTC	1 cut(s)	474
PdmI	GAANNNNTTC	1 cut(s)	353
PfeI	GAWTC	3 cut(s)	341, 524, 1142
PflMI	CCANNNNNTGG	1 cut(s)	71
PfoI	TCCNGGA	1 cut(s)	208
PkrI	GCNGC	1 cut(s)	943
PshBI	ATTAAT	1 cut(s)	324
Psp6I	CCWGG	2 cut(s)	208, 1107
PspFI	CCCAGC	2 cut(s)	305, 1043
PspGI	CCWGG	2 cut(s)	208, 1107
PspN4I	GGNNCC	1 cut(s)	159
PspPI	GGNCC	1 cut(s)	31
RsaI	GTAC	2 cut(s)	628, 954
RsaNI	GTAC	2 cut(s)	627, 953
SapI	GCTCTTC	1 cut(s)	474
SaqAI	TTAA	1 cut(s)	324
SatI	GCNGC	1 cut(s)	942
Sau3AI	GATC	2 cut(s)	451, 878
Sau96I	GGNCC	1 cut(s)	31
ScrFI	CCNGG	2 cut(s)	210, 1109
SduI	GDGCHC	1 cut(s)	617
SfaNI	GCATC	2 cut(s)	583, 679
SfcI	CTRYAG	2 cut(s)	684, 861
SfuI	TTCGAA	3 cut(s)	100, 642, 998
SmlI	CTYRAG	1 cut(s)	267
SmoI	CTYRAG	1 cut(s)	267
SsiI	CCGC	2 cut(s)	50, 941
SspMI	CTAG	3 cut(s)	297, 560, 1052
StyD4I	CCNGG	2 cut(s)	208, 1107
TaaI	ACNGT	2 cut(s)	516, 685
TaqI	TCGA	6 cut(s)	83, 100, 108, 642, 677, 998
TatI	WGTACW	1 cut(s)	952
TauI	GCSGC	1 cut(s)	944
TfiI	GAWTC	3 cut(s)	341, 524, 1142
Tru1I	TTAA	1 cut(s)	324
Tru9I	TTAA	1 cut(s)	324
TscAI	CASTG	3 cut(s)	339, 447, 892
TspDTI	ATGAA	8 cut(s)	356, 428, 461, 663, 726, 834, 840, 889
TspGWI	ACGGA	1 cut(s)	721
TspRI	CASTG	3 cut(s)	339, 447, 892
Van91I	CCANNNNNTGG	1 cut(s)	71
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	3 cut(s)	233, 476, 921
XceI	RCATGY	1 cut(s)	768
XmnI	GAANNNNTTC	1 cut(s)	353
XspI	CTAG	3 cut(s)	297, 560, 1052

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.